Click here to switch to the map view.

The map label for this gene is visC [H]

Identifier: 120597560

GI number: 120597560

Start: 807446

End: 808669

Strand: Direct

Name: visC [H]

Synonym: Sputw3181_0729

Alternate gene names: 120597560

Gene position: 807446-808669 (Clockwise)

Preceding gene: 120597559

Following gene: 120597561

Centisome position: 17.15

GC content: 51.96

Gene sequence:

>1224_bases
ATGTTAAGTTCACAAGCCTATGACATTGCCATTGTGGGTGGCGGCATGGTGGGACTCGCCACCGCGATTGGATTGGCGCA
GGCCGATTTAAATGTCGTCGTTATCGATGCGGGCCATACGCAGGCCGTTGTCGGCGAACCGCGTTTGCGGGTGAGTGCCA
TCAATAAGGTGAGTCAACGCTTATTGGAACACTTAGGTGCGTGGACATACTTAGATACAAACCGTGCCACGCCTTATCAA
AAAATGGCGGTGTGGGATAAAGACGGTTTTGGCAAAATTGCCTTCGATGCCAGTAGTATCAGTGAGCCTAGCCTCGGCGC
GATTATCGAAAACGACGCCATTAGCTTTGCCCTCGCCAAACGTGCCAGTGAGTTTGACAATATTACCCATATCCAAAACC
ACCGCCTCGAGCGCATTGCCTTTGGTGATCGTGAGGCTTGGTTGACCTTAGCCGATAGCGCCGATTCTGAAATCGAAAGT
GTTAGTGCAGCCTTGGTGATCGCCGCCGATGGCGCCAATTCTTGGGTACGTGAGCAGTGCAAGATCCCATTGACGTTTTG
GGATTATGGTCATCACGCGATTGTTGCAACTATCCGTACGGAATTACCGCACCTTGCCACCGCCCGCCAAGTGTTTTTAC
AGGACGGCCCTTTGGCATTTTTACCTTTGTATGAAGACAATCTCTGCTCCATCGTCTGGTCGGTACCGCCCGAGCGCGCC
ACTGAATTACTGGCGATGGACAAAGTGCAATTTGAGCGTAGCTTAACCGCCGCCTTCGATGGCCGCCTCGGGATTTGCAA
GCTTGAAAGTGAGCGCCAAGCCTTCCCATTGCGAATGCGCTACGCCCGCCATTTTGCCCGTCACCGCCTGTTATTAGCAG
GCGATGCGGCTCATACGATTCATCCGCTGGCTGGCCAAGGGATTAACCTCGGCTTTTTAGATGCGGCCAGTATTATCGAA
GTGGTCAGTGAGCTACATACAGCAGGTAAGGATATTGGGGACTATGCACACTTGCGTGCGTTAGAGCGTTGGCGCAAGGC
CGATGCGATGGAGATGATTGCGGCGATGGAAGGCTTTAAACGCCTATTCGAAGGTTCAAATCCGGTCAAAAAGGCCATTC
GCGATTTGGGATTAAATCTCGTTGATAATGTCTCTGGGCTGAAAACAGTGTTCATGCAACAGGCCATGGGCAATAAGTCG
TCGCTGCCTAAGTTATGTCGTTAG

Upstream 100 bases:

>100_bases
GTCTTGGTTTCCGCCACTCAAAACCCCCGTCGCTCAAAAAGCGATGGGTTGGAAATAACACAGCAATTTACTGGTATCGC
AACGCGAAAAGGATGTACCC

Downstream 100 bases:

>100_bases
CCTCGGTTGCGCTAATGTGATCAGAATTGCTGACAATATCAGCAATTTGGCTGCAAGCTGCGCAAATCTGGTTTTTGCAT
GTAAAAAAATTACATGTTGA

Product: UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MLSSQAYDIAIVGGGMVGLATAIGLAQADLNVVVIDAGHTQAVVGEPRLRVSAINKVSQRLLEHLGAWTYLDTNRATPYQ
KMAVWDKDGFGKIAFDASSISEPSLGAIIENDAISFALAKRASEFDNITHIQNHRLERIAFGDREAWLTLADSADSEIES
VSAALVIAADGANSWVREQCKIPLTFWDYGHHAIVATIRTELPHLATARQVFLQDGPLAFLPLYEDNLCSIVWSVPPERA
TELLAMDKVQFERSLTAAFDGRLGICKLESERQAFPLRMRYARHFARHRLLLAGDAAHTIHPLAGQGINLGFLDAASIIE
VVSELHTAGKDIGDYAHLRALERWRKADAMEMIAAMEGFKRLFEGSNPVKKAIRDLGLNLVDNVSGLKTVFMQQAMGNKS
SLPKLCR

Sequences:

>Translated_407_residues
MLSSQAYDIAIVGGGMVGLATAIGLAQADLNVVVIDAGHTQAVVGEPRLRVSAINKVSQRLLEHLGAWTYLDTNRATPYQ
KMAVWDKDGFGKIAFDASSISEPSLGAIIENDAISFALAKRASEFDNITHIQNHRLERIAFGDREAWLTLADSADSEIES
VSAALVIAADGANSWVREQCKIPLTFWDYGHHAIVATIRTELPHLATARQVFLQDGPLAFLPLYEDNLCSIVWSVPPERA
TELLAMDKVQFERSLTAAFDGRLGICKLESERQAFPLRMRYARHFARHRLLLAGDAAHTIHPLAGQGINLGFLDAASIIE
VVSELHTAGKDIGDYAHLRALERWRKADAMEMIAAMEGFKRLFEGSNPVKKAIRDLGLNLVDNVSGLKTVFMQQAMGNKS
SLPKLCR
>Mature_407_residues
MLSSQAYDIAIVGGGMVGLATAIGLAQADLNVVVIDAGHTQAVVGEPRLRVSAINKVSQRLLEHLGAWTYLDTNRATPYQ
KMAVWDKDGFGKIAFDASSISEPSLGAIIENDAISFALAKRASEFDNITHIQNHRLERIAFGDREAWLTLADSADSEIES
VSAALVIAADGANSWVREQCKIPLTFWDYGHHAIVATIRTELPHLATARQVFLQDGPLAFLPLYEDNLCSIVWSVPPERA
TELLAMDKVQFERSLTAAFDGRLGICKLESERQAFPLRMRYARHFARHRLLLAGDAAHTIHPLAGQGINLGFLDAASIIE
VVSELHTAGKDIGDYAHLRALERWRKADAMEMIAAMEGFKRLFEGSNPVKKAIRDLGLNLVDNVSGLKTVFMQQAMGNKS
SLPKLCR

Specific function: Not yet known [H]

COG id: COG0654

COG function: function code HC; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiH/COQ6 family [H]

Homologues:

Organism=Homo sapiens, GI32967305, Length=386, Percent_Identity=32.6424870466321, Blast_Score=172, Evalue=4e-43,
Organism=Homo sapiens, GI32967307, Length=352, Percent_Identity=32.3863636363636, Blast_Score=151, Evalue=9e-37,
Organism=Escherichia coli, GI1789273, Length=405, Percent_Identity=52.8395061728395, Blast_Score=418, Evalue=1e-118,
Organism=Escherichia coli, GI1786883, Length=399, Percent_Identity=35.0877192982456, Blast_Score=210, Evalue=1e-55,
Organism=Escherichia coli, GI1789274, Length=398, Percent_Identity=30.4020100502513, Blast_Score=157, Evalue=2e-39,
Organism=Caenorhabditis elegans, GI25146631, Length=440, Percent_Identity=28.1818181818182, Blast_Score=159, Evalue=2e-39,
Organism=Saccharomyces cerevisiae, GI6321694, Length=457, Percent_Identity=26.2582056892779, Blast_Score=127, Evalue=2e-30,
Organism=Drosophila melanogaster, GI19920760, Length=440, Percent_Identity=32.2727272727273, Blast_Score=166, Evalue=2e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002938
- InterPro:   IPR003042
- InterPro:   IPR018168
- InterPro:   IPR010971 [H]

Pfam domain/function: PF01494 FAD_binding_3 [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 44653; Mature: 44653

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: PS01304 UBIH

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSSQAYDIAIVGGGMVGLATAIGLAQADLNVVVIDAGHTQAVVGEPRLRVSAINKVSQR
CCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCHHHHHHHHHHHH
LLEHLGAWTYLDTNRATPYQKMAVWDKDGFGKIAFDASSISEPSLGAIIENDAISFALAK
HHHHCCCEEEEECCCCCCCHHEEEECCCCCCEEEECCCCCCCCCCCEEEECCHHHHHHHH
RASEFDNITHIQNHRLERIAFGDREAWLTLADSADSEIESVSAALVIAADGANSWVREQC
HHHHHHCHHHHHHCCCHHHCCCCCCEEEEEECCCCHHHHHCEEEEEEEECCCCHHHHHHC
KIPLTFWDYGHHAIVATIRTELPHLATARQVFLQDGPLAFLPLYEDNLCSIVWSVPPERA
CCCEEEECCCCEEEEEEHHHHCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCHHHH
TELLAMDKVQFERSLTAAFDGRLGICKLESERQAFPLRMRYARHFARHRLLLAGDAAHTI
HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCEEEEECCCHHHC
HPLAGQGINLGFLDAASIIEVVSELHTAGKDIGDYAHLRALERWRKADAMEMIAAMEGFK
CCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLFEGSNPVKKAIRDLGLNLVDNVSGLKTVFMQQAMGNKSSLPKLCR
HHHCCCCHHHHHHHHCCCHHHHCHHHHHHHHHHHHCCCCCCCCHHCC
>Mature Secondary Structure
MLSSQAYDIAIVGGGMVGLATAIGLAQADLNVVVIDAGHTQAVVGEPRLRVSAINKVSQR
CCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCHHHHHHHHHHHH
LLEHLGAWTYLDTNRATPYQKMAVWDKDGFGKIAFDASSISEPSLGAIIENDAISFALAK
HHHHCCCEEEEECCCCCCCHHEEEECCCCCCEEEECCCCCCCCCCCEEEECCHHHHHHHH
RASEFDNITHIQNHRLERIAFGDREAWLTLADSADSEIESVSAALVIAADGANSWVREQC
HHHHHHCHHHHHHCCCHHHCCCCCCEEEEEECCCCHHHHHCEEEEEEEECCCCHHHHHHC
KIPLTFWDYGHHAIVATIRTELPHLATARQVFLQDGPLAFLPLYEDNLCSIVWSVPPERA
CCCEEEECCCCEEEEEEHHHHCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCHHHH
TELLAMDKVQFERSLTAAFDGRLGICKLESERQAFPLRMRYARHFARHRLLLAGDAAHTI
HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCEEEEECCCHHHC
HPLAGQGINLGFLDAASIIEVVSELHTAGKDIGDYAHLRALERWRKADAMEMIAAMEGFK
CCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLFEGSNPVKKAIRDLGLNLVDNVSGLKTVFMQQAMGNKSSLPKLCR
HHHCCCCHHHHHHHHCCCHHHHCHHHHHHHHHHHHCCCCCCCCHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on paired donors, with incorporation or reduction of molecular oxygen; With NADH2 or NADPH2 as one donor, and incorporation of one atom of oxygen [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1339425; 9278503 [H]