Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
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Accession | NC_008750 |
Length | 4,708,380 |
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The map label for this gene is 120597429
Identifier: 120597429
GI number: 120597429
Start: 653870
End: 655363
Strand: Direct
Name: 120597429
Synonym: Sputw3181_0598
Alternate gene names: NA
Gene position: 653870-655363 (Clockwise)
Preceding gene: 120597428
Following gene: 120597430
Centisome position: 13.89
GC content: 50.94
Gene sequence:
>1494_bases ATGAAAAAAACGATTCTCGCCCGTACTTTAGTTTGTCTGTTTAGATCGGGCTTGTTTAGCTGCGGATTAGTATTGGCCGC CGGATTGGTAGCCTTTGCCCTCGCGGCAGAAAATGACTCTCTTGAAGTCGACGTCCTGGAAGTCAAGGTCCTTGAAACCA AAGCCTCTGAAGCTAATGCCCCTGAAATCAAAGCCTCTGAAGTTGAGGCATTTAAGGCGCAATCACTGGGTTTACCCGCC AAAGAAACCGACACGGCACATGTCAACTTTGGCCAATGGTTGCCTGAGTTACTCACACAGTTCAATCAGTTACCTGAGGT TCAGGCGCAACTTGTAAGGCAGCAACAGGCCAAACTGGCCATTCAGGCGGCAGATCGCGCTGTGTATAACCCAGAGCTTG GGCTTAATTATCAAAATGCTGATACAGATGCCTACAGCTTAGGGCTGAGTCAAACCCTCGATTGGGGCGACAAGCGCGGC GTGGCGACAAAGCGTGCCGAGCTTGAAGCGCAAATCCTGTTAGCGGACATAGGGTTAGAGCGTAGCCAAATGTTGGCCGA ACGCTTACTGGCCTTGGCAGAACAGGCGCAAAGCCGTAAGGCGCTGACCTTTGCCGAGCAGCAATTAAGGTTCACCAAGG CGCAGCTCAATATTGCTGAGCAGCGATTGGCGGCGGGGGATTTATCCAACGTCGAGCTGCAATTGATACAACTCGAAGTC GCCTCTAACACTGCCGACTACGCCTTAGCCGAGCAGGTGGCCTTAGTGGCCGATGGCAAAGTAATTGAATTACTGGGGGA TAATAATTTCGCTTTTAGTGAATTTATCAAGGAGATCCATTTCTTTGTGACTCAGGCTAAGCAAGCGCCAGCGGCCGAGT TGGGCACCTCTAAATCAGCCTTGCCAGCCCTGGCGAGTGCTTATCAGCAAGTGCTGCTCGCCAGAGTTAATGTCATGCAA GTCAAAGCGGAAGCTTCAGCTGACCCGACTATTAGCCTAGGCGCTGAAAAGGAGGGCACGGACAATAAGCTCGGTGTCGG CGTGTCGATTCCTCTACAAGTTCGCAATAACTACAGTGAGTTGCAAGCCGTAGCCGATAAGGGCATCGCTATCGCGGAGC AAGGCTATCTTGCCCGTGAGCGAGTACTTACCGCTAAGCAGAAACAATTCCTCTATGCGTTACCGCGTTTACTCGAACGT TACCAAGACTGGCGCGAGTTAGTGCAAGTGTCAGGTGCTAAAGCCGCTAAATCCTTAAGCCAACAATGGCAGGCGGGGGA TGTGAGTACTAGCGAGTACTTACAGAGCCGTCGTCAGTTGGCCGCCAGTTATTTGGTGGGGTTGAACCTAGAAACGGCTA TCTATCAAAGTTGGTTAACTTGGATGGGCGAAAGCGGCCAGCTTATGCCTTTTATCGAAAAGCTCATTATAGAAAAGCTA AATGCAGCTCCTTCGATAACATCTAATGCCGCCGCACGCACAGTAAACCCATGA
Upstream 100 bases:
>100_bases ATTGCTTTGCATTGAGCTATTGAAATCAAGCTCACATCTAGCCGTTTCGCTTTGGGCGCAAAAGTCAGCCGATCCACATT CGATATTGTTAGGATTTGCG
Downstream 100 bases:
>100_bases GGTCACAATAATGAATTCAAATACTCACCACGAAAATATCCTTCAACTGGATGCTGTAATGACGCCTGAAAAGCGTCGGT TTAACCTATCAAAAATTGCG
Product: outer membrane efflux protein
Products: NA
Alternate protein names: Outer Membrane Efflux Protein; Efflux Family Outer Membrane Protein; Outer Membrane Protein Probably Efflux Family; Outer Membrane Protein; Cation Efflux System Protein; Lipoprotein
Number of amino acids: Translated: 497; Mature: 497
Protein sequence:
>497_residues MKKTILARTLVCLFRSGLFSCGLVLAAGLVAFALAAENDSLEVDVLEVKVLETKASEANAPEIKASEVEAFKAQSLGLPA KETDTAHVNFGQWLPELLTQFNQLPEVQAQLVRQQQAKLAIQAADRAVYNPELGLNYQNADTDAYSLGLSQTLDWGDKRG VATKRAELEAQILLADIGLERSQMLAERLLALAEQAQSRKALTFAEQQLRFTKAQLNIAEQRLAAGDLSNVELQLIQLEV ASNTADYALAEQVALVADGKVIELLGDNNFAFSEFIKEIHFFVTQAKQAPAAELGTSKSALPALASAYQQVLLARVNVMQ VKAEASADPTISLGAEKEGTDNKLGVGVSIPLQVRNNYSELQAVADKGIAIAEQGYLARERVLTAKQKQFLYALPRLLER YQDWRELVQVSGAKAAKSLSQQWQAGDVSTSEYLQSRRQLAASYLVGLNLETAIYQSWLTWMGESGQLMPFIEKLIIEKL NAAPSITSNAAARTVNP
Sequences:
>Translated_497_residues MKKTILARTLVCLFRSGLFSCGLVLAAGLVAFALAAENDSLEVDVLEVKVLETKASEANAPEIKASEVEAFKAQSLGLPA KETDTAHVNFGQWLPELLTQFNQLPEVQAQLVRQQQAKLAIQAADRAVYNPELGLNYQNADTDAYSLGLSQTLDWGDKRG VATKRAELEAQILLADIGLERSQMLAERLLALAEQAQSRKALTFAEQQLRFTKAQLNIAEQRLAAGDLSNVELQLIQLEV ASNTADYALAEQVALVADGKVIELLGDNNFAFSEFIKEIHFFVTQAKQAPAAELGTSKSALPALASAYQQVLLARVNVMQ VKAEASADPTISLGAEKEGTDNKLGVGVSIPLQVRNNYSELQAVADKGIAIAEQGYLARERVLTAKQKQFLYALPRLLER YQDWRELVQVSGAKAAKSLSQQWQAGDVSTSEYLQSRRQLAASYLVGLNLETAIYQSWLTWMGESGQLMPFIEKLIIEKL NAAPSITSNAAARTVNP >Mature_497_residues MKKTILARTLVCLFRSGLFSCGLVLAAGLVAFALAAENDSLEVDVLEVKVLETKASEANAPEIKASEVEAFKAQSLGLPA KETDTAHVNFGQWLPELLTQFNQLPEVQAQLVRQQQAKLAIQAADRAVYNPELGLNYQNADTDAYSLGLSQTLDWGDKRG VATKRAELEAQILLADIGLERSQMLAERLLALAEQAQSRKALTFAEQQLRFTKAQLNIAEQRLAAGDLSNVELQLIQLEV ASNTADYALAEQVALVADGKVIELLGDNNFAFSEFIKEIHFFVTQAKQAPAAELGTSKSALPALASAYQQVLLARVNVMQ VKAEASADPTISLGAEKEGTDNKLGVGVSIPLQVRNNYSELQAVADKGIAIAEQGYLARERVLTAKQKQFLYALPRLLER YQDWRELVQVSGAKAAKSLSQQWQAGDVSTSEYLQSRRQLAASYLVGLNLETAIYQSWLTWMGESGQLMPFIEKLIIEKL NAAPSITSNAAARTVNP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54178; Mature: 54178
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKTILARTLVCLFRSGLFSCGLVLAAGLVAFALAAENDSLEVDVLEVKVLETKASEANA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCC PEIKASEVEAFKAQSLGLPAKETDTAHVNFGQWLPELLTQFNQLPEVQAQLVRQQQAKLA CCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH IQAADRAVYNPELGLNYQNADTDAYSLGLSQTLDWGDKRGVATKRAELEAQILLADIGLE HHHHHHHEECCCCCCCCCCCCCCHHHCCCHHHCCCCCCCCCCHHHHHHHHHEEEECCCCC RSQMLAERLLALAEQAQSRKALTFAEQQLRFTKAQLNIAEQRLAAGDLSNVELQLIQLEV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE ASNTADYALAEQVALVADGKVIELLGDNNFAFSEFIKEIHFFVTQAKQAPAAELGTSKSA CCCCHHHHHHHHHHHEECCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCHHH LPALASAYQQVLLARVNVMQVKAEASADPTISLGAEKEGTDNKLGVGVSIPLQVRNNYSE HHHHHHHHHHHHHHHHHHHEEEECCCCCCCEEECCCCCCCCCCEECEEEEEEHCCCCHHH LQAVADKGIAIAEQGYLARERVLTAKQKQFLYALPRLLERYQDWRELVQVSGAKAAKSLS HHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH QQWQAGDVSTSEYLQSRRQLAASYLVGLNLETAIYQSWLTWMGESGQLMPFIEKLIIEKL HHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH NAAPSITSNAAARTVNP CCCCCCCCCCCCCCCCC >Mature Secondary Structure MKKTILARTLVCLFRSGLFSCGLVLAAGLVAFALAAENDSLEVDVLEVKVLETKASEANA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCC PEIKASEVEAFKAQSLGLPAKETDTAHVNFGQWLPELLTQFNQLPEVQAQLVRQQQAKLA CCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH IQAADRAVYNPELGLNYQNADTDAYSLGLSQTLDWGDKRGVATKRAELEAQILLADIGLE HHHHHHHEECCCCCCCCCCCCCCHHHCCCHHHCCCCCCCCCCHHHHHHHHHEEEECCCCC RSQMLAERLLALAEQAQSRKALTFAEQQLRFTKAQLNIAEQRLAAGDLSNVELQLIQLEV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE ASNTADYALAEQVALVADGKVIELLGDNNFAFSEFIKEIHFFVTQAKQAPAAELGTSKSA CCCCHHHHHHHHHHHEECCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCHHH LPALASAYQQVLLARVNVMQVKAEASADPTISLGAEKEGTDNKLGVGVSIPLQVRNNYSE HHHHHHHHHHHHHHHHHHHEEEECCCCCCCEEECCCCCCCCCCEECEEEEEEHCCCCHHH LQAVADKGIAIAEQGYLARERVLTAKQKQFLYALPRLLERYQDWRELVQVSGAKAAKSLS HHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH QQWQAGDVSTSEYLQSRRQLAASYLVGLNLETAIYQSWLTWMGESGQLMPFIEKLIIEKL HHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH NAAPSITSNAAARTVNP CCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA