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The map label for this gene is rfbA [H]

Identifier: 119947063

GI number: 119947063

Start: 4282488

End: 4283303

Strand: Reverse

Name: rfbA [H]

Synonym: Ping_3461

Alternate gene names: 119947063

Gene position: 4283303-4282488 (Counterclockwise)

Preceding gene: 119947064

Following gene: 119947062

Centisome position: 93.94

GC content: 28.92

Gene sequence:

>816_bases
ATGTATAAAGTTGATAAAAATTTAATATCATCAATATCAATACTGTATAAAAATAAACGTTTGATTATATCTTTAACTAG
GCGTGATATCTTGCAAAGATATCAAGGTTCTCTGTTGGGTGTATTTTGGTCCATATTAACACCAATAGTAATGCTTGCGA
TTTATACTTTTATTTTTAGTGTTGTCTTTAAGGCTAAGTGGGGTATTGGAGGTGATAAATATCAATTCTCAATGTTGCTA
TTTTCTGGGTTGATATTGTTTAATTTCTTTTCTGATATATTATCGAGATCGCCTGAATTGTTGGTTTCGCACTCTAATTA
CGTCACAAAAGTTATTTTTCCTGTTGAAATATTACCATGGGTAATAACGTTATCAGCGTTATTTAACTTTATATTATCAT
TTATAATCTGGTTTATATTTTATACATTGTTGATTGGTTTACCTGCATTATCTGTGATTTTTACGCCTGCCATCGTTATA
CCATTCTGTTTTTTATGTTGTGGTTTGTCATATATTATATCTGCTACGGGGGTTTATTTAAAAGATACAAACCAACTCGT
GGCATTGCTTGTTACTGCAATGATGTTTCTGACTCCAATTTTTTATCCTATATCGGCATTACCAGAAAAATATCAAGTTT
ATATGTACTTAAATCCAATAACAAATGTCATTGAAATGTTTAGAGATATTGCCATTTATAATAACTCTATAACTTTAAAT
GGTTACGCAATCTATTTTTTTTCTTCAGCATTTATTTATTTATTGGGTTTTTTGTGGTTTCAAAAATTGAGAAAAGGTTT
TAGCGATGTATTGTAA

Upstream 100 bases:

>100_bases
CCTGATATTGGTATTGAGTGGCCGATTAAAGAGGAAGTGCCTTTATTATCTGAAAAAGATAAAAATGCAAAATTATTAAA
AATGATTAGCAGGATGCAAT

Downstream 100 bases:

>100_bases
TGAAACAATATTATCAGTGGATAATGTGAGTAAATGTTTTGAGATGTACAAGAAACCTTCTCATCGGTTATTACAAATGT
TCTTAAGGCGTAAAAAACTC

Product: ABC-2 type transporter permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MYKVDKNLISSISILYKNKRLIISLTRRDILQRYQGSLLGVFWSILTPIVMLAIYTFIFSVVFKAKWGIGGDKYQFSMLL
FSGLILFNFFSDILSRSPELLVSHSNYVTKVIFPVEILPWVITLSALFNFILSFIIWFIFYTLLIGLPALSVIFTPAIVI
PFCFLCCGLSYIISATGVYLKDTNQLVALLVTAMMFLTPIFYPISALPEKYQVYMYLNPITNVIEMFRDIAIYNNSITLN
GYAIYFFSSAFIYLLGFLWFQKLRKGFSDVL

Sequences:

>Translated_271_residues
MYKVDKNLISSISILYKNKRLIISLTRRDILQRYQGSLLGVFWSILTPIVMLAIYTFIFSVVFKAKWGIGGDKYQFSMLL
FSGLILFNFFSDILSRSPELLVSHSNYVTKVIFPVEILPWVITLSALFNFILSFIIWFIFYTLLIGLPALSVIFTPAIVI
PFCFLCCGLSYIISATGVYLKDTNQLVALLVTAMMFLTPIFYPISALPEKYQVYMYLNPITNVIEMFRDIAIYNNSITLN
GYAIYFFSSAFIYLLGFLWFQKLRKGFSDVL
>Mature_271_residues
MYKVDKNLISSISILYKNKRLIISLTRRDILQRYQGSLLGVFWSILTPIVMLAIYTFIFSVVFKAKWGIGGDKYQFSMLL
FSGLILFNFFSDILSRSPELLVSHSNYVTKVIFPVEILPWVITLSALFNFILSFIIWFIFYTLLIGLPALSVIFTPAIVI
PFCFLCCGLSYIISATGVYLKDTNQLVALLVTAMMFLTPIFYPISALPEKYQVYMYLNPITNVIEMFRDIAIYNNSITLN
GYAIYFFSSAFIYLLGFLWFQKLRKGFSDVL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 31208; Mature: 31208

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKVDKNLISSISILYKNKRLIISLTRRDILQRYQGSLLGVFWSILTPIVMLAIYTFIFS
CCCCHHHHHHHHHHHHCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVFKAKWGIGGDKYQFSMLLFSGLILFNFFSDILSRSPELLVSHSNYVTKVIFPVEILPW
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHH
VITLSALFNFILSFIIWFIFYTLLIGLPALSVIFTPAIVIPFCFLCCGLSYIISATGVYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
KDTNQLVALLVTAMMFLTPIFYPISALPEKYQVYMYLNPITNVIEMFRDIAIYNNSITLN
ECHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHCCCEEEEC
GYAIYFFSSAFIYLLGFLWFQKLRKGFSDVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MYKVDKNLISSISILYKNKRLIISLTRRDILQRYQGSLLGVFWSILTPIVMLAIYTFIFS
CCCCHHHHHHHHHHHHCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVFKAKWGIGGDKYQFSMLLFSGLILFNFFSDILSRSPELLVSHSNYVTKVIFPVEILPW
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHH
VITLSALFNFILSFIIWFIFYTLLIGLPALSVIFTPAIVIPFCFLCCGLSYIISATGVYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
KDTNQLVALLVTAMMFLTPIFYPISALPEKYQVYMYLNPITNVIEMFRDIAIYNNSITLN
ECHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHCCCEEEEC
GYAIYFFSSAFIYLLGFLWFQKLRKGFSDVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]