Definition | Psychromonas ingrahamii 37, complete genome. |
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Accession | NC_008709 |
Length | 4,559,598 |
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The map label for this gene is 119946953
Identifier: 119946953
GI number: 119946953
Start: 4136110
End: 4136877
Strand: Reverse
Name: 119946953
Synonym: Ping_3347
Alternate gene names: NA
Gene position: 4136877-4136110 (Counterclockwise)
Preceding gene: 119946954
Following gene: 119946941
Centisome position: 90.73
GC content: 36.59
Gene sequence:
>768_bases ATGGCAACACAATTATTGATTTATGGGCAAGTAGAGGCATTAAATAACAAACGTCATATCGATTGGTCTATTAAAGCGGG TAATAATTATAATTATGCCAAAAAAGTGAATTCTGTGCCTTTAATGGCAGTGGAATTTTCCAAGGCGTTTGAAGAATACT CAATTGTGTTTGCAGGTAGCGGTGATGAGTTATTACCTGTGGTTATTATGGGTGTACGTGAAGATGAAAATCTTTATGTC GATCAAGAGGGATCGTGGAAAGCTAATTACGTACCTGCGTTTATTCGTCGCTATCCGTTTGTATTTGCCAGTACTGACGA TGGAAAAACATTGACCTTATGTCTTGATGAAAATTATGACGGTTGTAATCAAGAAGGGCTTGGTGAGCGTTTATTTGACG CTGATGGAGAACAGACTGAATACTTGGGTAAGGTGCTCGATTTTTTACAAGACTATCAAACTCACTATAAACGCACACAA TTATTTTGTCAGGCATTAAATGAACTTGATTTATTTGAAGATATGGGTGCTAAGTTTACTTTGTCGTCGGGTGAAGAACG CTCCTTAACCGGGTTCAAAGTGATTAACCGTGAAAAATTGAAAGCTCTTTCTCAAGAAGCATTGTCAACATTGATGAAAA ATGATGGTCTTGAATTGATTTATCTGCATTTACACTCAATGCGCAACTTTAATAAAGTGTTAGAGCGTCTTCCTAAACAA GAAGAAAATGCCAGTGAAGAAGTAAAAGAACTAGAAGCAATTGAATAA
Upstream 100 bases:
>100_bases AGAACGGCATGGATAGCAGCGGCTTGATAACAGAGTGAATATTTATAAGTAGTGTTGCGAATACTTAATTCGTAATAAAA TTAAACAAGGAGAAATGTCA
Downstream 100 bases:
>100_bases ACAGCTACAGAGTCAGCTGACATGGTTCATACGCCCCAGTTAAGAGTTAATGAACTTAACGGGGTAAATAGAATGACAAC ATATAAAAAATATTTAAAAT
Product: SapC family protein
Products: NA
Alternate protein names: SapC-Related Protein; SapC-Like Protein; SapC Related Protein; SapC Protein; SapC Superfamily; SapC Superfamily Protein; SAPC Family Protein; Sapc Family Protein
Number of amino acids: Translated: 255; Mature: 254
Protein sequence:
>255_residues MATQLLIYGQVEALNNKRHIDWSIKAGNNYNYAKKVNSVPLMAVEFSKAFEEYSIVFAGSGDELLPVVIMGVREDENLYV DQEGSWKANYVPAFIRRYPFVFASTDDGKTLTLCLDENYDGCNQEGLGERLFDADGEQTEYLGKVLDFLQDYQTHYKRTQ LFCQALNELDLFEDMGAKFTLSSGEERSLTGFKVINREKLKALSQEALSTLMKNDGLELIYLHLHSMRNFNKVLERLPKQ EENASEEVKELEAIE
Sequences:
>Translated_255_residues MATQLLIYGQVEALNNKRHIDWSIKAGNNYNYAKKVNSVPLMAVEFSKAFEEYSIVFAGSGDELLPVVIMGVREDENLYV DQEGSWKANYVPAFIRRYPFVFASTDDGKTLTLCLDENYDGCNQEGLGERLFDADGEQTEYLGKVLDFLQDYQTHYKRTQ LFCQALNELDLFEDMGAKFTLSSGEERSLTGFKVINREKLKALSQEALSTLMKNDGLELIYLHLHSMRNFNKVLERLPKQ EENASEEVKELEAIE >Mature_254_residues ATQLLIYGQVEALNNKRHIDWSIKAGNNYNYAKKVNSVPLMAVEFSKAFEEYSIVFAGSGDELLPVVIMGVREDENLYVD QEGSWKANYVPAFIRRYPFVFASTDDGKTLTLCLDENYDGCNQEGLGERLFDADGEQTEYLGKVLDFLQDYQTHYKRTQL FCQALNELDLFEDMGAKFTLSSGEERSLTGFKVINREKLKALSQEALSTLMKNDGLELIYLHLHSMRNFNKVLERLPKQE ENASEEVKELEAIE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29188; Mature: 29057
Theoretical pI: Translated: 4.45; Mature: 4.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATQLLIYGQVEALNNKRHIDWSIKAGNNYNYAKKVNSVPLMAVEFSKAFEEYSIVFAGS CCCEEEEEEEHEECCCCEEEEEEEECCCCCCHHHHCCCCCEEEEHHHHHHHHEEEEEECC GDELLPVVIMGVREDENLYVDQEGSWKANYVPAFIRRYPFVFASTDDGKTLTLCLDENYD CCCEEEEEEEEEECCCCEEECCCCCCCCCHHHHHHHHCCEEEEECCCCCEEEEEEECCCC GCNQEGLGERLFDADGEQTEYLGKVLDFLQDYQTHYKRTQLFCQALNELDLFEDMGAKFT CCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE LSSGEERSLTGFKVINREKLKALSQEALSTLMKNDGLELIYLHLHSMRNFNKVLERLPKQ ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCC EENASEEVKELEAIE CCCHHHHHHHHHCCC >Mature Secondary Structure ATQLLIYGQVEALNNKRHIDWSIKAGNNYNYAKKVNSVPLMAVEFSKAFEEYSIVFAGS CCEEEEEEEHEECCCCEEEEEEEECCCCCCHHHHCCCCCEEEEHHHHHHHHEEEEEECC GDELLPVVIMGVREDENLYVDQEGSWKANYVPAFIRRYPFVFASTDDGKTLTLCLDENYD CCCEEEEEEEEEECCCCEEECCCCCCCCCHHHHHHHHCCEEEEECCCCCEEEEEEECCCC GCNQEGLGERLFDADGEQTEYLGKVLDFLQDYQTHYKRTQLFCQALNELDLFEDMGAKFT CCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE LSSGEERSLTGFKVINREKLKALSQEALSTLMKNDGLELIYLHLHSMRNFNKVLERLPKQ ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCC EENASEEVKELEAIE CCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA