Click here to switch to the map view.

The map label for this gene is yncB [H]

Identifier: 119946954

GI number: 119946954

Start: 4137805

End: 4138848

Strand: Reverse

Name: yncB [H]

Synonym: Ping_3348

Alternate gene names: 119946954

Gene position: 4138848-4137805 (Counterclockwise)

Preceding gene: 119946955

Following gene: 119946953

Centisome position: 90.77

GC content: 45.21

Gene sequence:

>1044_bases
ATGAGTCAAACTAAACAAGTCAATCGCCAATTTTTATTAGCATCGCGTCCGGTTGGCGCGCCCGTCCGCGCTGATTTTAA
TCTGGTTGAAACAGCTGTCCCGGCAATTAAAGAAGGTGAGGTTTTATTACGCAGCGTCTATCTTTCTTTAGATCCTTATA
TGCGTGGTCGTATGAGTGATGCTAAATCCTATGCGCCGGCGGTGGAATTGGGAGAGCCTCTGGTTGGTGGAGCAGTATGC
CGTATTGAACAGTCACATAATCCTGATTTTGTAGTGGGGGATTGGGTTGTCGCCTTTGCCGGATGGCAAGATTATGCGGT
CTCTGACGGTCAGAGTCTGCTTAAAATCGATGCCAGCCTGGCACACCACTCCTATGCGCTGGGTGTGTTAGGAATGCCTG
GTTTAACCGCTTATATGGGCTTACTCGATATTGGTCAACCACAGGCCGGTGAAACCGTAGTGGTTGCCGCAGCAACCGGC
GCAGTCGGTAGTTTAGTTGGACAAATAGCTAAATTAAAAGGCTGTAAAGTGGTCGGGATTGCGGGCGGTGCAGAAAAATG
CAGGTACGCAGTTGAGCAGTTGGGGTTTGATTTTTGTCTGGATCATAAATCGGAAAATTTAGCAGAGCAATTAAGCAAGG
CCTGCGATAACGGTATCGATGTCTACTTTGAAAGTGTTGGCGGTAAGGTTTTTGATGCCGTTTTTCCATTATTAAACACT
AAAGCACGTATTCCTGTCTGTGGTTTAATCTCACAATATAACGCCACAGAGCTTCCTGAGGGCCCCGATAGACTTTCTAT
GCTGATGGGTACTTTGTTAGTTAAACGCATTAAAGCCCAGGGATTTATTGTTTTTGATGATTATGGTGATCGCTATAATG
AGTTTAGTGAAGCGATGGGGGAATGGTTAAGTGACGGAAAAATTAAATATAAAGAGCAGATTGTCGATGGTTTAGAAAAT
GCACCATCTGCTTTTATCGGGCTGCTGCAGGGTGAAAACTTTGGTAAGCTTATCGTGCGTGTTGGACCTGATAATTTACA
GTAA

Upstream 100 bases:

>100_bases
CTTTCTTGATACTTTAGCTGGGGAAGCTTTCAGCGCAGTGATGGCTGAAAGCTTCCCCAGTCAAAGTGGAAAGCCCTCCT
AGCACAGATTGGAATTATTT

Downstream 100 bases:

>100_bases
ACGATAATTTAATTTATATTGTAAATTAAATACCATAAATAAAAAAACCGCTTAAGTTACTGCTAAGCGGTTTTTTTATT
GATCCACTAAAGCTCCCTGA

Product: alcohol dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 347; Mature: 346

Protein sequence:

>347_residues
MSQTKQVNRQFLLASRPVGAPVRADFNLVETAVPAIKEGEVLLRSVYLSLDPYMRGRMSDAKSYAPAVELGEPLVGGAVC
RIEQSHNPDFVVGDWVVAFAGWQDYAVSDGQSLLKIDASLAHHSYALGVLGMPGLTAYMGLLDIGQPQAGETVVVAAATG
AVGSLVGQIAKLKGCKVVGIAGGAEKCRYAVEQLGFDFCLDHKSENLAEQLSKACDNGIDVYFESVGGKVFDAVFPLLNT
KARIPVCGLISQYNATELPEGPDRLSMLMGTLLVKRIKAQGFIVFDDYGDRYNEFSEAMGEWLSDGKIKYKEQIVDGLEN
APSAFIGLLQGENFGKLIVRVGPDNLQ

Sequences:

>Translated_347_residues
MSQTKQVNRQFLLASRPVGAPVRADFNLVETAVPAIKEGEVLLRSVYLSLDPYMRGRMSDAKSYAPAVELGEPLVGGAVC
RIEQSHNPDFVVGDWVVAFAGWQDYAVSDGQSLLKIDASLAHHSYALGVLGMPGLTAYMGLLDIGQPQAGETVVVAAATG
AVGSLVGQIAKLKGCKVVGIAGGAEKCRYAVEQLGFDFCLDHKSENLAEQLSKACDNGIDVYFESVGGKVFDAVFPLLNT
KARIPVCGLISQYNATELPEGPDRLSMLMGTLLVKRIKAQGFIVFDDYGDRYNEFSEAMGEWLSDGKIKYKEQIVDGLEN
APSAFIGLLQGENFGKLIVRVGPDNLQ
>Mature_346_residues
SQTKQVNRQFLLASRPVGAPVRADFNLVETAVPAIKEGEVLLRSVYLSLDPYMRGRMSDAKSYAPAVELGEPLVGGAVCR
IEQSHNPDFVVGDWVVAFAGWQDYAVSDGQSLLKIDASLAHHSYALGVLGMPGLTAYMGLLDIGQPQAGETVVVAAATGA
VGSLVGQIAKLKGCKVVGIAGGAEKCRYAVEQLGFDFCLDHKSENLAEQLSKACDNGIDVYFESVGGKVFDAVFPLLNTK
ARIPVCGLISQYNATELPEGPDRLSMLMGTLLVKRIKAQGFIVFDDYGDRYNEFSEAMGEWLSDGKIKYKEQIVDGLENA
PSAFIGLLQGENFGKLIVRVGPDNLQ

Specific function: Unknown

COG id: COG2130

COG function: function code R; Putative NADP-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NADP-dependent oxidoreductase L4BD family [H]

Homologues:

Organism=Homo sapiens, GI226059159, Length=337, Percent_Identity=40.3560830860534, Blast_Score=243, Evalue=1e-64,
Organism=Homo sapiens, GI226059133, Length=337, Percent_Identity=40.3560830860534, Blast_Score=243, Evalue=1e-64,
Organism=Homo sapiens, GI226246682, Length=342, Percent_Identity=39.766081871345, Blast_Score=238, Evalue=7e-63,
Organism=Homo sapiens, GI226246680, Length=342, Percent_Identity=39.766081871345, Blast_Score=238, Evalue=7e-63,
Organism=Homo sapiens, GI22748929, Length=342, Percent_Identity=39.766081871345, Blast_Score=238, Evalue=7e-63,
Organism=Homo sapiens, GI226056130, Length=309, Percent_Identity=37.8640776699029, Blast_Score=196, Evalue=3e-50,
Organism=Homo sapiens, GI28557745, Length=329, Percent_Identity=28.2674772036474, Blast_Score=95, Evalue=1e-19,
Organism=Escherichia coli, GI226510941, Length=345, Percent_Identity=64.0579710144928, Blast_Score=472, Evalue=1e-134,
Organism=Caenorhabditis elegans, GI133901712, Length=359, Percent_Identity=33.983286908078, Blast_Score=193, Evalue=9e-50,
Organism=Caenorhabditis elegans, GI133901710, Length=359, Percent_Identity=33.7047353760446, Blast_Score=193, Evalue=1e-49,
Organism=Saccharomyces cerevisiae, GI6323504, Length=365, Percent_Identity=30.6849315068493, Blast_Score=131, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013149
- InterPro:   IPR002085
- InterPro:   IPR011032
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00107 ADH_zinc_N [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 37301; Mature: 37170

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQTKQVNRQFLLASRPVGAPVRADFNLVETAVPAIKEGEVLLRSVYLSLDPYMRGRMSD
CCCHHHHHHHHEEECCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCHHHHCCCHH
AKSYAPAVELGEPLVGGAVCRIEQSHNPDFVVGDWVVAFAGWQDYAVSDGQSLLKIDASL
HHHHCCHHHCCCCCCCCEEEEEECCCCCCEEECCCEEEEECCCCCCCCCCCHHHHHHHHH
AHHSYALGVLGMPGLTAYMGLLDIGQPQAGETVVVAAATGAVGSLVGQIAKLKGCKVVGI
HHHHHEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEE
AGGAEKCRYAVEQLGFDFCLDHKSENLAEQLSKACDNGIDVYFESVGGKVFDAVFPLLNT
CCCHHHHHHHHHHCCHHHEECCCCHHHHHHHHHHHCCCCEEEHHHHCCHHHHHHHHHHCC
KARIPVCGLISQYNATELPEGPDRLSMLMGTLLVKRIKAQGFIVFDDYGDRYNEFSEAMG
CCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHH
EWLSDGKIKYKEQIVDGLENAPSAFIGLLQGENFGKLIVRVGPDNLQ
HHHCCCCEEHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEEECCCCCC
>Mature Secondary Structure 
SQTKQVNRQFLLASRPVGAPVRADFNLVETAVPAIKEGEVLLRSVYLSLDPYMRGRMSD
CCHHHHHHHHEEECCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCHHHHCCCHH
AKSYAPAVELGEPLVGGAVCRIEQSHNPDFVVGDWVVAFAGWQDYAVSDGQSLLKIDASL
HHHHCCHHHCCCCCCCCEEEEEECCCCCCEEECCCEEEEECCCCCCCCCCCHHHHHHHHH
AHHSYALGVLGMPGLTAYMGLLDIGQPQAGETVVVAAATGAVGSLVGQIAKLKGCKVVGI
HHHHHEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEE
AGGAEKCRYAVEQLGFDFCLDHKSENLAEQLSKACDNGIDVYFESVGGKVFDAVFPLLNT
CCCHHHHHHHHHHCCHHHEECCCCHHHHHHHHHHHCCCCEEEHHHHCCHHHHHHHHHHCC
KARIPVCGLISQYNATELPEGPDRLSMLMGTLLVKRIKAQGFIVFDDYGDRYNEFSEAMG
CCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHH
EWLSDGKIKYKEQIVDGLENAPSAFIGLLQGENFGKLIVRVGPDNLQ
HHHCCCCEEHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]