Definition | Psychromonas ingrahamii 37, complete genome. |
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Accession | NC_008709 |
Length | 4,559,598 |
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The map label for this gene is 119946938
Identifier: 119946938
GI number: 119946938
Start: 4116643
End: 4118235
Strand: Reverse
Name: 119946938
Synonym: Ping_3332
Alternate gene names: NA
Gene position: 4118235-4116643 (Counterclockwise)
Preceding gene: 119946939
Following gene: 119946937
Centisome position: 90.32
GC content: 46.2
Gene sequence:
>1593_bases ATGAATACACTTAAGACAGATGACTGTTCCACGGAAAAGGACTCTTTGATCGATCACTATATGGCTGAGATTAGAAAGCG CCTGCCGGTTGTAGACAAAACATTAGAATTGTACGGAGAACTGCTGCTGAGCGAATATCTTGATGTGGTGACTGAAACCG CAAGCGAGCGCTACCAGTCAGCCGATGATCTGGCTGATGTTGTTTATGAATATGCCGCACCGCTGCTAGGTGAAAAAGTC GCCGCAATGGCGCGGGAGGAGCTGAAACAGAGCCCAGTGGTATTGACGGCTAACCACCATGGTGTTGACTACTTTGCCCA ATCGGTGCAGGGAACGCTGCTGTTCAGCCAGCGCAAACTGCCCAATGGCCAGAAAGCTAAGACAGTGCCAGTACTGGCCT GTGGCGCTATTCCATTGAACAATATGACTTATCCGCGTGGGATGTTGTGTTATGATATAACTGAGTTTAAGCGGGCTGGA ATCCCTATCCGCTTGCCCCTATTTCCAAAACGTCGACAAAACGAGACTGTCTCGTTGACAGGACCTTTTGAGAAAGGAGC TGTTGAACGAGCGGAAAAGTCCACTCGTAAAATGGTGGGTGATCATTTAATCTCAGCTGCGACTGGCAAGGCGTTAATGT CGGTGTTGGAAGATGAATATTCCAGCCCGAGAGTATTGGGCCTTTCTTCCTACTCAGAGCAAGCCGTTGTGATCAACAGC CTGCTCTGGAAGCGGCTGTTTCACAATAGTGATACATCGCAGTTATTATATCTGGAGCAAGAAGAGATTGTTCGTATCTT ATTGGTGCGTGATCTTAAATCGGAGACCTCTATGGCATCGCTGTTAATGCTAGATGTGGACTTTCTAAAAATACTGCTTG CTAACCTAGATGATGCGCGAGGTTGTTGGCAATCCGAAGGGCTTGAAAGCCGTATCTTGTCTGCGGATTCTTTACGGATT AATCCTACTAAATCTACAGGGAGTTTTCTCTTTTGGTGGATAGATGATGCAGGGCGAAGAGTCCCGCTTGTTTTGGATAA AAGCTCTGATCTACTATGTTTAATAGGGATCAGCGAGTCAGGAGTGGAGCACAAGGTAGAGTTGACAGCAAACAACCTGA TAGATAGCTTGGAGACTAAAAGGTTGATACCGTCTACCTTTACTTGTTTCTTAGTATTGGCTTTTGCTCGAGGTGTAACT TGCGCGGGTGGTTATTATCAAGCCGATTATCTGCCAGTTATTCAGCAGGGGCTCGTAAAGTCTATCGAAGAGCATGGCAG TCATATGTCGTTGATCCCATATATTCAGGGAATACCTACGGATAAATATTTGTCAGGTATGCAGACAGTTATGCGCAGAT GGGAGCATGGTGCCTTACATCCAGCTGGCCCATTAGAAATGATAGCGTCAGAGATGTCGCTTAATGACCATATCAGTAAC ATTGTTGAGATGACCGTACATGACGCACATAAAGCATCTTTGGTAGAAACTGTCGCTGATGCAGCTCCAGATCAAGTAAT GTCTGAGGATTGGTATGCCCGGTTGGCAGATCAACTAGGAAGTTATTTTGCTGGCAACGTAGTAACTGTCTGA
Upstream 100 bases:
>100_bases TATCTAGGGCTGGCATACATTGTTATGTCCCTTATTTTTATCTGGTTGACACGTAGTGATGCCGATCAACTAAAAAAAAT ACAGGAAGGAACTTCGTAGT
Downstream 100 bases:
>100_bases TCTAAGGTTGAGTACTTAGATAATTAGAAAGGCTCTACTCGTATAACAAAGTATTAATAGATCATAACCATAGGCGGAAT TACCATGTATTGTATTCGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 530; Mature: 530
Protein sequence:
>530_residues MNTLKTDDCSTEKDSLIDHYMAEIRKRLPVVDKTLELYGELLLSEYLDVVTETASERYQSADDLADVVYEYAAPLLGEKV AAMAREELKQSPVVLTANHHGVDYFAQSVQGTLLFSQRKLPNGQKAKTVPVLACGAIPLNNMTYPRGMLCYDITEFKRAG IPIRLPLFPKRRQNETVSLTGPFEKGAVERAEKSTRKMVGDHLISAATGKALMSVLEDEYSSPRVLGLSSYSEQAVVINS LLWKRLFHNSDTSQLLYLEQEEIVRILLVRDLKSETSMASLLMLDVDFLKILLANLDDARGCWQSEGLESRILSADSLRI NPTKSTGSFLFWWIDDAGRRVPLVLDKSSDLLCLIGISESGVEHKVELTANNLIDSLETKRLIPSTFTCFLVLAFARGVT CAGGYYQADYLPVIQQGLVKSIEEHGSHMSLIPYIQGIPTDKYLSGMQTVMRRWEHGALHPAGPLEMIASEMSLNDHISN IVEMTVHDAHKASLVETVADAAPDQVMSEDWYARLADQLGSYFAGNVVTV
Sequences:
>Translated_530_residues MNTLKTDDCSTEKDSLIDHYMAEIRKRLPVVDKTLELYGELLLSEYLDVVTETASERYQSADDLADVVYEYAAPLLGEKV AAMAREELKQSPVVLTANHHGVDYFAQSVQGTLLFSQRKLPNGQKAKTVPVLACGAIPLNNMTYPRGMLCYDITEFKRAG IPIRLPLFPKRRQNETVSLTGPFEKGAVERAEKSTRKMVGDHLISAATGKALMSVLEDEYSSPRVLGLSSYSEQAVVINS LLWKRLFHNSDTSQLLYLEQEEIVRILLVRDLKSETSMASLLMLDVDFLKILLANLDDARGCWQSEGLESRILSADSLRI NPTKSTGSFLFWWIDDAGRRVPLVLDKSSDLLCLIGISESGVEHKVELTANNLIDSLETKRLIPSTFTCFLVLAFARGVT CAGGYYQADYLPVIQQGLVKSIEEHGSHMSLIPYIQGIPTDKYLSGMQTVMRRWEHGALHPAGPLEMIASEMSLNDHISN IVEMTVHDAHKASLVETVADAAPDQVMSEDWYARLADQLGSYFAGNVVTV >Mature_530_residues MNTLKTDDCSTEKDSLIDHYMAEIRKRLPVVDKTLELYGELLLSEYLDVVTETASERYQSADDLADVVYEYAAPLLGEKV AAMAREELKQSPVVLTANHHGVDYFAQSVQGTLLFSQRKLPNGQKAKTVPVLACGAIPLNNMTYPRGMLCYDITEFKRAG IPIRLPLFPKRRQNETVSLTGPFEKGAVERAEKSTRKMVGDHLISAATGKALMSVLEDEYSSPRVLGLSSYSEQAVVINS LLWKRLFHNSDTSQLLYLEQEEIVRILLVRDLKSETSMASLLMLDVDFLKILLANLDDARGCWQSEGLESRILSADSLRI NPTKSTGSFLFWWIDDAGRRVPLVLDKSSDLLCLIGISESGVEHKVELTANNLIDSLETKRLIPSTFTCFLVLAFARGVT CAGGYYQADYLPVIQQGLVKSIEEHGSHMSLIPYIQGIPTDKYLSGMQTVMRRWEHGALHPAGPLEMIASEMSLNDHISN IVEMTVHDAHKASLVETVADAAPDQVMSEDWYARLADQLGSYFAGNVVTV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58914; Mature: 58914
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTLKTDDCSTEKDSLIDHYMAEIRKRLPVVDKTLELYGELLLSEYLDVVTETASERYQS CCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC ADDLADVVYEYAAPLLGEKVAAMAREELKQSPVVLTANHHGVDYFAQSVQGTLLFSQRKL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHEEEECCCC PNGQKAKTVPVLACGAIPLNNMTYPRGMLCYDITEFKRAGIPIRLPLFPKRRQNETVSLT CCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEHHHHHHCCCCEECCCCCCCCCCCEEEEE GPFEKGAVERAEKSTRKMVGDHLISAATGKALMSVLEDEYSSPRVLGLSSYSEQAVVINS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH LLWKRLFHNSDTSQLLYLEQEEIVRILLVRDLKSETSMASLLMLDVDFLKILLANLDDAR HHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHC GCWQSEGLESRILSADSLRINPTKSTGSFLFWWIDDAGRRVPLVLDKSSDLLCLIGISES CCHHHCCHHHHHCCCCCEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCEEEEEECCCC GVEHKVELTANNLIDSLETKRLIPSTFTCFLVLAFARGVTCAGGYYQADYLPVIQQGLVK CCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHH SIEEHGSHMSLIPYIQGIPTDKYLSGMQTVMRRWEHGALHPAGPLEMIASEMSLNDHISN HHHHCCCCEEEHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH IVEMTVHDAHKASLVETVADAAPDQVMSEDWYARLADQLGSYFAGNVVTV HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEC >Mature Secondary Structure MNTLKTDDCSTEKDSLIDHYMAEIRKRLPVVDKTLELYGELLLSEYLDVVTETASERYQS CCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC ADDLADVVYEYAAPLLGEKVAAMAREELKQSPVVLTANHHGVDYFAQSVQGTLLFSQRKL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHEEEECCCC PNGQKAKTVPVLACGAIPLNNMTYPRGMLCYDITEFKRAGIPIRLPLFPKRRQNETVSLT CCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEHHHHHHCCCCEECCCCCCCCCCCEEEEE GPFEKGAVERAEKSTRKMVGDHLISAATGKALMSVLEDEYSSPRVLGLSSYSEQAVVINS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH LLWKRLFHNSDTSQLLYLEQEEIVRILLVRDLKSETSMASLLMLDVDFLKILLANLDDAR HHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHC GCWQSEGLESRILSADSLRINPTKSTGSFLFWWIDDAGRRVPLVLDKSSDLLCLIGISES CCHHHCCHHHHHCCCCCEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCEEEEEECCCC GVEHKVELTANNLIDSLETKRLIPSTFTCFLVLAFARGVTCAGGYYQADYLPVIQQGLVK CCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHH SIEEHGSHMSLIPYIQGIPTDKYLSGMQTVMRRWEHGALHPAGPLEMIASEMSLNDHISN HHHHCCCCEEEHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH IVEMTVHDAHKASLVETVADAAPDQVMSEDWYARLADQLGSYFAGNVVTV HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA