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The map label for this gene is yfiO [H]

Identifier: 119946872

GI number: 119946872

Start: 4031898

End: 4032671

Strand: Direct

Name: yfiO [H]

Synonym: Ping_3266

Alternate gene names: 119946872

Gene position: 4031898-4032671 (Clockwise)

Preceding gene: 119946868

Following gene: 119946880

Centisome position: 88.43

GC content: 38.89

Gene sequence:

>774_bases
ATGAAAAAGATCCTCAGACTAATAACCTCCTCTCTTATGATTGTTTTATTAAGCACCGGTTGTTCATCTAAAAAAGCTGA
AAAACCTAAAGTGGATGATAAACCACCCATGGTACTTTATGAACAAGCAAAACAAGCATTAGAGTCTGCAAGTTTTGAAA
AAGCATCTGATATTTTAGAGGCCTTGGATACCCGTTACCCCTTTGGCCCACATTCAGATCAGGTGCAATTGGATCTTATT
TACGCTTATTACAAACGTGGTGAAACAGCCTTTACACTGGCCAACATTGACCGGTTTCTTCGCCTGAACCCAACACATCC
CGACCTTGATTATATTTATTATATGCGTGGTTTAACCTATATCAGCGCAGATCAGCAATTTTTCCAGGACTTGTTTGGTA
TCGATCGTTATAACCGAGATCCAAACAATGCAATCCAAGCCTTCAAAGACTTATCAAGAATTATCAAATATTACCCAAGC
AGCGAATATGCTGTCGATGCGCAACAAAGGATAATAGATCTAAAAGATCGTTTAGCACGCTATGAAATTGGGATTGCGCA
GTGGTATCTCAAACGTGAAGCTTATATTGCCGCCATTAATCGTTGCAAAATAGTCTTAAATAATTACCCCGATATGCCGG
CTGTTGAACAGGCGCTAGAGATTATGATTGCAAGTTATAATGTCTTAGGTATTGAAGAGCCTAAAATGAATGCCTTGGCC
GTATTAAAATTAAACTACCCGAAAAACCTGACGCTGATAGATGTTAAACCTTAG

Upstream 100 bases:

>100_bases
TATTTAGCTGTGATACAGTCACATTTTATCTTTTTTAACTTTTCTTTTATGGATTGATAGAAGATACTGTCCCTTTATCT
GCATTGGCATTATAACACTT

Downstream 100 bases:

>100_bases
AATTAATTTTATCCTGACACATTATCATTGGAAAAAGGTGCGTGGCTAAAAATGCCTTATAGCTGTAAAATATCAATGTA
ACGAATATAAAAAAAGGAGA

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MKKILRLITSSLMIVLLSTGCSSKKAEKPKVDDKPPMVLYEQAKQALESASFEKASDILEALDTRYPFGPHSDQVQLDLI
YAYYKRGETAFTLANIDRFLRLNPTHPDLDYIYYMRGLTYISADQQFFQDLFGIDRYNRDPNNAIQAFKDLSRIIKYYPS
SEYAVDAQQRIIDLKDRLARYEIGIAQWYLKREAYIAAINRCKIVLNNYPDMPAVEQALEIMIASYNVLGIEEPKMNALA
VLKLNYPKNLTLIDVKP

Sequences:

>Translated_257_residues
MKKILRLITSSLMIVLLSTGCSSKKAEKPKVDDKPPMVLYEQAKQALESASFEKASDILEALDTRYPFGPHSDQVQLDLI
YAYYKRGETAFTLANIDRFLRLNPTHPDLDYIYYMRGLTYISADQQFFQDLFGIDRYNRDPNNAIQAFKDLSRIIKYYPS
SEYAVDAQQRIIDLKDRLARYEIGIAQWYLKREAYIAAINRCKIVLNNYPDMPAVEQALEIMIASYNVLGIEEPKMNALA
VLKLNYPKNLTLIDVKP
>Mature_257_residues
MKKILRLITSSLMIVLLSTGCSSKKAEKPKVDDKPPMVLYEQAKQALESASFEKASDILEALDTRYPFGPHSDQVQLDLI
YAYYKRGETAFTLANIDRFLRLNPTHPDLDYIYYMRGLTYISADQQFFQDLFGIDRYNRDPNNAIQAFKDLSRIIKYYPS
SEYAVDAQQRIIDLKDRLARYEIGIAQWYLKREAYIAAINRCKIVLNNYPDMPAVEQALEIMIASYNVLGIEEPKMNALA
VLKLNYPKNLTLIDVKP

Specific function: Unknown

COG id: COG4105

COG function: function code R; DNA uptake lipoprotein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0169 (ComL) family [H]

Homologues:

Organism=Escherichia coli, GI1788947, Length=240, Percent_Identity=45.8333333333333, Blast_Score=225, Evalue=3e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017689
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29644; Mature: 29644

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKILRLITSSLMIVLLSTGCSSKKAEKPKVDDKPPMVLYEQAKQALESASFEKASDILE
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
ALDTRYPFGPHSDQVQLDLIYAYYKRGETAFTLANIDRFLRLNPTHPDLDYIYYMRGLTY
HHHCCCCCCCCCCCEEHHHHHHHHHCCCCEEEHCCHHHHEEECCCCCCHHHHHHHHCCCE
ISADQQFFQDLFGIDRYNRDPNNAIQAFKDLSRIIKYYPSSEYAVDAQQRIIDLKDRLAR
EECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHH
YEIGIAQWYLKREAYIAAINRCKIVLNNYPDMPAVEQALEIMIASYNVLGIEEPKMNALA
HHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHCCEEECCCCCCCEEE
VLKLNYPKNLTLIDVKP
EEEECCCCCEEEEEECC
>Mature Secondary Structure
MKKILRLITSSLMIVLLSTGCSSKKAEKPKVDDKPPMVLYEQAKQALESASFEKASDILE
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
ALDTRYPFGPHSDQVQLDLIYAYYKRGETAFTLANIDRFLRLNPTHPDLDYIYYMRGLTY
HHHCCCCCCCCCCCEEHHHHHHHHHCCCCEEEHCCHHHHEEECCCCCCHHHHHHHHCCCE
ISADQQFFQDLFGIDRYNRDPNNAIQAFKDLSRIIKYYPSSEYAVDAQQRIIDLKDRLAR
EECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHH
YEIGIAQWYLKREAYIAAINRCKIVLNNYPDMPAVEQALEIMIASYNVLGIEEPKMNALA
HHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHCCEEECCCCCCCEEE
VLKLNYPKNLTLIDVKP
EEEECCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]