| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is amiB [H]
Identifier: 119946847
GI number: 119946847
Start: 3998805
End: 4001327
Strand: Reverse
Name: amiB [H]
Synonym: Ping_3241
Alternate gene names: 119946847
Gene position: 4001327-3998805 (Counterclockwise)
Preceding gene: 119946848
Following gene: 119946846
Centisome position: 87.76
GC content: 42.96
Gene sequence:
>2523_bases ATGAAATTAACAACACGGTTTTTTATGCGCTTGGTTTTTTTGTCTGTGCTGCTTATACAGGGTATGTTAACTGTTGCAAT GGCAACGGCAGTTCCAACAAACCAATTAAATGAGGTGCGCACTTGGCCTTCTCCGGATAATACTCGTGTTGTTTTAGAAT TTTTGCATAAACCCAGCTATAAAACGCATTATTTAAAATACCCGGATCGACTGGTTATCGATCTTCAGTCAACCTCAACG GACGTTAATTTAACCAAAATTAAGCACAAAGGTCCATTGGTTAATAATCTTCGTGAAAGTGCCAGCATATCTAAAAGCAG CTATCGGATCGTAGTCGATTTGAATAAAGCCAGTCAGGCTAAAATGTTCGTTTTGCCGAAGGCTAAGCCTTACGGTCACC GTCTGGTTATTGACTTGCCGCATAATCAACTCAGCACGATAATCGTCACCAAACCAAAACAACCAGCGCAAGGGCGCAAT ATTATTATTGCGATTGATGCCGGGCATGGGGGGGATGATCCCGGTGCATCGGGCCGCTATAGTCATGAAAAAAAAATCAC CCTACAGATAGCTAAACGCTTACTGAAAAAAATTAATCAACAAGTTGGGATGAGCGCTTTTTTGATTCGTGAAGGTGATT ATTTTGTTGGTTTGCATCAACGCACGGCCATTGCACGTAAAGGTGAGGCTGATTTTTTGGTGTCTATTCATGCAGATGGA TTTACCTCTGCTCGCCCTCGAGGCGCATCGGTTTTAGTCTTATCAAAAAGAAGAGCGACCACAGAACAGGGCCGCTGGAT GGAAAATAATGAAGCACATTCTGAGTTGATCGGGGGGGCGGGTAAAATGATGCAGGGTTCTAGCAACCGGCCTTATCTGC AAAAAATGGTTTTAGATATGTCCATGGGTAACTCCATGGCAGTTGGTTTTAAGGTCGGTTACCGGGTTGTTAATGAATTA AAAAAAGTGACCCCTTTGCACCAGGCGGCACCCGTTCATGCCAGCCTCGCGGTGTTAAAATCCCCTGATATACCTTCTAT CTTAGTGGAAGCCGGTTTTATTACTAACCGCACTGAAGAGAAGTTGTTAAATCAAGCCTCGCATCAAAACAAAATTACCA ATGCGGTGTTTAACGGCATTTATAAACATTTTATTCAATCTCCTCCGCAAAACACATTATTTGCGCAAAAAAAACGTGTT ATTAAACATACGGTCCGCAGTGGCGAATCCTTATCAATACTGTCTGAACGTTATAGCGTAAGCTTGAGCCACTTGAAAGC ATATAATCATTTAGGGTCAAACTCTCTGCTCGTTGATCAGGTATTAAATATACCGCCCAACTACAAGTTGGCTGTCACCC CGGAAGCGCCTAAACAGTTTCTTCGTACCGAGCCGTCGGCACGTGTTCACCGGGTTCGCAGTGGCGAGTCGTTGTCTGTG ATTGCGGAGCAATACGGTACAACAACACAAACCCTTAAAAGCTTTAATAATTTGCCTTCAATGACACTTGCGATCGGACA AAAAGTAAAAATTCCCAGCGCTGATCTTGACGTGCCGGTTGTGCTAGCTGCGAGTGTTCACAGGGTCCGTGGTGGCGAGG CTTTGTCTGTGATTGCAGAGCAATACGGCACAACAACGCAAACCCTTAAAAGCTTTAACAATTTATCTTCAATGACGCTT GCGATAGGGCAAAAAATAAAGATACCGGGAGATAATGAGGTGATACCGGTTAGACCAAGTTCACATAAGGTCAGCAGCGG CGAGTCTCTGTCGGTCATTGCCGAGCGTTATGGGGTCACTTCAGATAACTTAAAAGCCTACAACAAGCTGAACTCAAGTT CATTATTGATAGGTCAGGTTCTGCAAATTCCAAGAAGCGATTATGTCGCCTCTATACCGTTAGTCGTGCGTGTACATAAG GTTGAAGCGGGGGAGTCGCTATCGGTGATAGCGCAGCGTTATGACACTTCTAGTATACGATTAAAAGCGTATAACGGGCT AAGTTCCAGCACTGTTTTTATTGGCCAACAGATGAAAATACCATTACCTGATTATGTTATAAAAGAGCAACTGCATAAGG TTAAAGTGGGAGAGTCGCTGTCGGTGATAGCGCAAGGTTATGACACTTCTAGCGCACGATTAAAAGCCTATAATGGACTA AGTTCCAGCACCGTTTTTATTGGCCAACAGATTAAAATACCAGCACCTGATTATGTTGTAAAAGAGCAGCTGCATAAGGT TAAAGCAGGAGAGTCGCTATCGGTGATAGCGCAGCGTTATGATACAACCAGCGCACGATTAAAGGCGTATAACAGGCTAA GTTCCAGCATTGTTTTTATTGGTCAAAATATTAAAATACCATCACCTGGTTATTTTATAAAAGAGCATAAAGTACGCAGT GGTGAATCACTTTCAGTGATCGCCAGTCGTTATGGTACAACCAGTGATGTTATTAAAGAATTTAATAAACTCAGTTCAAC TTTGCTTAGGGTTGGTCAAGTTTTAACCATTCCTGTTAGTTAA
Upstream 100 bases:
>100_bases CCTCTCCTGATATCGACTTAACATTACGCTATGTCGATCAGCAAAGAATCGTCGAGTTACAGGCTAATACAGAAGTTGGA CAGCAGGTTTTAAATAAATT
Downstream 100 bases:
>100_bases TCGATTTCGGATACCCGTTTTTATGCCTATTCAAATTTTAGCTGCTCGCCTGGCTAACCAAATTGCTGCGGGTGAGGTCG TTGAACGCCCGGCTTCGGTG
Product: N-acetylmuramoyl-L-alanine amidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 840; Mature: 840
Protein sequence:
>840_residues MKLTTRFFMRLVFLSVLLIQGMLTVAMATAVPTNQLNEVRTWPSPDNTRVVLEFLHKPSYKTHYLKYPDRLVIDLQSTST DVNLTKIKHKGPLVNNLRESASISKSSYRIVVDLNKASQAKMFVLPKAKPYGHRLVIDLPHNQLSTIIVTKPKQPAQGRN IIIAIDAGHGGDDPGASGRYSHEKKITLQIAKRLLKKINQQVGMSAFLIREGDYFVGLHQRTAIARKGEADFLVSIHADG FTSARPRGASVLVLSKRRATTEQGRWMENNEAHSELIGGAGKMMQGSSNRPYLQKMVLDMSMGNSMAVGFKVGYRVVNEL KKVTPLHQAAPVHASLAVLKSPDIPSILVEAGFITNRTEEKLLNQASHQNKITNAVFNGIYKHFIQSPPQNTLFAQKKRV IKHTVRSGESLSILSERYSVSLSHLKAYNHLGSNSLLVDQVLNIPPNYKLAVTPEAPKQFLRTEPSARVHRVRSGESLSV IAEQYGTTTQTLKSFNNLPSMTLAIGQKVKIPSADLDVPVVLAASVHRVRGGEALSVIAEQYGTTTQTLKSFNNLSSMTL AIGQKIKIPGDNEVIPVRPSSHKVSSGESLSVIAERYGVTSDNLKAYNKLNSSSLLIGQVLQIPRSDYVASIPLVVRVHK VEAGESLSVIAQRYDTSSIRLKAYNGLSSSTVFIGQQMKIPLPDYVIKEQLHKVKVGESLSVIAQGYDTSSARLKAYNGL SSSTVFIGQQIKIPAPDYVVKEQLHKVKAGESLSVIAQRYDTTSARLKAYNRLSSSIVFIGQNIKIPSPGYFIKEHKVRS GESLSVIASRYGTTSDVIKEFNKLSSTLLRVGQVLTIPVS
Sequences:
>Translated_840_residues MKLTTRFFMRLVFLSVLLIQGMLTVAMATAVPTNQLNEVRTWPSPDNTRVVLEFLHKPSYKTHYLKYPDRLVIDLQSTST DVNLTKIKHKGPLVNNLRESASISKSSYRIVVDLNKASQAKMFVLPKAKPYGHRLVIDLPHNQLSTIIVTKPKQPAQGRN IIIAIDAGHGGDDPGASGRYSHEKKITLQIAKRLLKKINQQVGMSAFLIREGDYFVGLHQRTAIARKGEADFLVSIHADG FTSARPRGASVLVLSKRRATTEQGRWMENNEAHSELIGGAGKMMQGSSNRPYLQKMVLDMSMGNSMAVGFKVGYRVVNEL KKVTPLHQAAPVHASLAVLKSPDIPSILVEAGFITNRTEEKLLNQASHQNKITNAVFNGIYKHFIQSPPQNTLFAQKKRV IKHTVRSGESLSILSERYSVSLSHLKAYNHLGSNSLLVDQVLNIPPNYKLAVTPEAPKQFLRTEPSARVHRVRSGESLSV IAEQYGTTTQTLKSFNNLPSMTLAIGQKVKIPSADLDVPVVLAASVHRVRGGEALSVIAEQYGTTTQTLKSFNNLSSMTL AIGQKIKIPGDNEVIPVRPSSHKVSSGESLSVIAERYGVTSDNLKAYNKLNSSSLLIGQVLQIPRSDYVASIPLVVRVHK VEAGESLSVIAQRYDTSSIRLKAYNGLSSSTVFIGQQMKIPLPDYVIKEQLHKVKVGESLSVIAQGYDTSSARLKAYNGL SSSTVFIGQQIKIPAPDYVVKEQLHKVKAGESLSVIAQRYDTTSARLKAYNRLSSSIVFIGQNIKIPSPGYFIKEHKVRS GESLSVIASRYGTTSDVIKEFNKLSSTLLRVGQVLTIPVS >Mature_840_residues MKLTTRFFMRLVFLSVLLIQGMLTVAMATAVPTNQLNEVRTWPSPDNTRVVLEFLHKPSYKTHYLKYPDRLVIDLQSTST DVNLTKIKHKGPLVNNLRESASISKSSYRIVVDLNKASQAKMFVLPKAKPYGHRLVIDLPHNQLSTIIVTKPKQPAQGRN IIIAIDAGHGGDDPGASGRYSHEKKITLQIAKRLLKKINQQVGMSAFLIREGDYFVGLHQRTAIARKGEADFLVSIHADG FTSARPRGASVLVLSKRRATTEQGRWMENNEAHSELIGGAGKMMQGSSNRPYLQKMVLDMSMGNSMAVGFKVGYRVVNEL KKVTPLHQAAPVHASLAVLKSPDIPSILVEAGFITNRTEEKLLNQASHQNKITNAVFNGIYKHFIQSPPQNTLFAQKKRV IKHTVRSGESLSILSERYSVSLSHLKAYNHLGSNSLLVDQVLNIPPNYKLAVTPEAPKQFLRTEPSARVHRVRSGESLSV IAEQYGTTTQTLKSFNNLPSMTLAIGQKVKIPSADLDVPVVLAASVHRVRGGEALSVIAEQYGTTTQTLKSFNNLSSMTL AIGQKIKIPGDNEVIPVRPSSHKVSSGESLSVIAERYGVTSDNLKAYNKLNSSSLLIGQVLQIPRSDYVASIPLVVRVHK VEAGESLSVIAQRYDTSSIRLKAYNGLSSSTVFIGQQMKIPLPDYVIKEQLHKVKVGESLSVIAQGYDTSSARLKAYNGL SSSTVFIGQQIKIPAPDYVVKEQLHKVKAGESLSVIAQRYDTTSARLKAYNRLSSSIVFIGQNIKIPSPGYFIKEHKVRS GESLSVIASRYGTTSDVIKEFNKLSSTLLRVGQVLTIPVS
Specific function: Cell-wall hydrolase involved in septum cleavage during cell division [H]
COG id: COG0860
COG function: function code M; N-acetylmuramoyl-L-alanine amidase
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family [H]
Homologues:
Organism=Escherichia coli, GI1790611, Length=251, Percent_Identity=45.0199203187251, Blast_Score=228, Evalue=1e-60, Organism=Escherichia coli, GI87082163, Length=405, Percent_Identity=34.8148148148148, Blast_Score=215, Evalue=7e-57, Organism=Escherichia coli, GI1788776, Length=236, Percent_Identity=36.864406779661, Blast_Score=153, Evalue=4e-38,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002508 [H]
Pfam domain/function: PF01520 Amidase_3 [H]
EC number: =3.5.1.28 [H]
Molecular weight: Translated: 92363; Mature: 92363
Theoretical pI: Translated: 10.58; Mature: 10.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLTTRFFMRLVFLSVLLIQGMLTVAMATAVPTNQLNEVRTWPSPDNTRVVLEFLHKPSY CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHCCCC KTHYLKYPDRLVIDLQSTSTDVNLTKIKHKGPLVNNLRESASISKSSYRIVVDLNKASQA CEEEEECCCEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHCCCCCCEEEEEEECCCCCC KMFVLPKAKPYGHRLVIDLPHNQLSTIIVTKPKQPAQGRNIIIAIDAGHGGDDPGASGRY EEEEEECCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCC SHEKKITLQIAKRLLKKINQQVGMSAFLIREGDYFVGLHQRTAIARKGEADFLVSIHADG CCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEHHHHHHHCCCCCEEEEEEECCC FTSARPRGASVLVLSKRRATTEQGRWMENNEAHSELIGGAGKMMQGSSNRPYLQKMVLDM CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCHHCCCCCCCHHHHHHHHHH SMGNSMAVGFKVGYRVVNELKKVTPLHQAAPVHASLAVLKSPDIPSILVEAGFITNRTEE CCCCCEEEHHHHHHHHHHHHHHHCCHHHCCCCHHEEEEECCCCCCHHHEECCCCCCCHHH KLLNQASHQNKITNAVFNGIYKHFIQSPPQNTLFAQKKRVIKHTVRSGESLSILSERYSV HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH SLSHLKAYNHLGSNSLLVDQVLNIPPNYKLAVTPEAPKQFLRTEPSARVHRVRSGESLSV HHHHHHHHHHCCCCCCHHHHHHCCCCCCEEEECCHHHHHHHHCCCCHHHHHHCCCCHHHH IAEQYGTTTQTLKSFNNLPSMTLAIGQKVKIPSADLDVPVVLAASVHRVRGGEALSVIAE HHHHHCCHHHHHHHHHCCCCEEECCCCEEECCCCCCCCCEEEHHHHHHHCCCHHHHHHHH QYGTTTQTLKSFNNLSSMTLAIGQKIKIPGDNEVIPVRPSSHKVSSGESLSVIAERYGVT HHCCHHHHHHHHHHHHHHHEECCCEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCC SDNLKAYNKLNSSSLLIGQVLQIPRSDYVASIPLVVRVHKVEAGESLSVIAQRYDTSSIR CCCHHHHHCCCCCCHHHHHHHHCCCCCCEEECCEEEEEEEECCCCHHHHHHHHCCCCEEE LKAYNGLSSSTVFIGQQMKIPLPDYVIKEQLHKVKVGESLSVIAQGYDTSSARLKAYNGL EEEECCCCCCEEEECCEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEECCC SSSTVFIGQQIKIPAPDYVVKEQLHKVKAGESLSVIAQRYDTTSARLKAYNRLSSSIVFI CCCEEEECCEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCEEEEE GQNIKIPSPGYFIKEHKVRSGESLSVIASRYGTTSDVIKEFNKLSSTLLRVGQVLTIPVS ECCEECCCCCCEEECCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECC >Mature Secondary Structure MKLTTRFFMRLVFLSVLLIQGMLTVAMATAVPTNQLNEVRTWPSPDNTRVVLEFLHKPSY CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHCCCC KTHYLKYPDRLVIDLQSTSTDVNLTKIKHKGPLVNNLRESASISKSSYRIVVDLNKASQA CEEEEECCCEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHCCCCCCEEEEEEECCCCCC KMFVLPKAKPYGHRLVIDLPHNQLSTIIVTKPKQPAQGRNIIIAIDAGHGGDDPGASGRY EEEEEECCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCC SHEKKITLQIAKRLLKKINQQVGMSAFLIREGDYFVGLHQRTAIARKGEADFLVSIHADG CCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEHHHHHHHCCCCCEEEEEEECCC FTSARPRGASVLVLSKRRATTEQGRWMENNEAHSELIGGAGKMMQGSSNRPYLQKMVLDM CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCHHCCCCCCCHHHHHHHHHH SMGNSMAVGFKVGYRVVNELKKVTPLHQAAPVHASLAVLKSPDIPSILVEAGFITNRTEE CCCCCEEEHHHHHHHHHHHHHHHCCHHHCCCCHHEEEEECCCCCCHHHEECCCCCCCHHH KLLNQASHQNKITNAVFNGIYKHFIQSPPQNTLFAQKKRVIKHTVRSGESLSILSERYSV HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH SLSHLKAYNHLGSNSLLVDQVLNIPPNYKLAVTPEAPKQFLRTEPSARVHRVRSGESLSV HHHHHHHHHHCCCCCCHHHHHHCCCCCCEEEECCHHHHHHHHCCCCHHHHHHCCCCHHHH IAEQYGTTTQTLKSFNNLPSMTLAIGQKVKIPSADLDVPVVLAASVHRVRGGEALSVIAE HHHHHCCHHHHHHHHHCCCCEEECCCCEEECCCCCCCCCEEEHHHHHHHCCCHHHHHHHH QYGTTTQTLKSFNNLSSMTLAIGQKIKIPGDNEVIPVRPSSHKVSSGESLSVIAERYGVT HHCCHHHHHHHHHHHHHHHEECCCEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCC SDNLKAYNKLNSSSLLIGQVLQIPRSDYVASIPLVVRVHKVEAGESLSVIAQRYDTSSIR CCCHHHHHCCCCCCHHHHHHHHCCCCCCEEECCEEEEEEEECCCCHHHHHHHHCCCCEEE LKAYNGLSSSTVFIGQQMKIPLPDYVIKEQLHKVKVGESLSVIAQGYDTSSARLKAYNGL EEEECCCCCCEEEECCEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEECCC SSSTVFIGQQIKIPAPDYVVKEQLHKVKAGESLSVIAQRYDTTSARLKAYNRLSSSIVFI CCCEEEECCEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCEEEEE GQNIKIPSPGYFIKEHKVRSGESLSVIASRYGTTSDVIKEFNKLSSTLLRVGQVLTIPVS ECCEECCCCCCEEECCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11677609; 2676972 [H]