Definition | Psychromonas ingrahamii 37, complete genome. |
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Accession | NC_008709 |
Length | 4,559,598 |
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The map label for this gene is 119946769
Identifier: 119946769
GI number: 119946769
Start: 3893288
End: 3894136
Strand: Reverse
Name: 119946769
Synonym: Ping_3162
Alternate gene names: NA
Gene position: 3894136-3893288 (Counterclockwise)
Preceding gene: 119946776
Following gene: 119946768
Centisome position: 85.41
GC content: 45.7
Gene sequence:
>849_bases ATGTCGAATAAAGTAATACTGGTCGTTCTAGATGGCCTTGCATATAGCACGGCTGAGCAATGTATGGGCTTTTTGCATGC CTTAAAAGAACAAGGGACAGCGACACTGTATAAATTACAGTGTGAGCTTCCATCAATGTCCCGCCCGCTGTATGAAACTA TCCTTACTGCTACAAGGCCTGCTGAAAGCGGTATTGTTCATAACAATGTGGTACGTAACTCTACCCAAAGCAGTATCTTT AGTTTGGCTCGGAAAAATAATTTAACCACGGCTGCAGCGGCTTATCACTGGTTTAGTGAACTGTACAATATAGCGCCCTT TGATGCTGTCAGGGATCGTTTTACCGAAGCACCTGAGCAATTAATCCAATACGGCTGTTTTTATAATGAAAACCATTATC CCGATTGCCATTTATACCTCGATGCTGAATGGTTACGCCGTAAATACGATCCGGATTTCCTGTTAGTGCATCCTATGAAT ATTGATGATGCGGGTCACCGTGCCGGGCTTGATAGTGCGCATTATCGTAATACCGCCCGTCACTCGGATCTGTCGTTGTC TTATCATCTGCCTGAATGGATAGCAGCCGGATATCAGATTCTGATTACTGCGGATCATGGCATGAACAGTGATAAAAGCC ATGGTGGCACCTTATCGGAAGAACGCGACATTCCTTTGTTCGTGATTGGCGATCGTTTTTCCCATCAAGCTGAATGCCTG CCTCTGCAAACTGACCTCTGCGGCGTGGTGTGTGATCTGCTGGGAATACAAGATCACGCAAAACCCGTAACGGAAGGTCT GTTATGTCAAGCGCCAGATGAAAATCTCACTTATCAGGGTGCTGCCTAA
Upstream 100 bases:
>100_bases GCTGTCACTTTATATTCATAATCCTTCGTTATCCTTCTGCCAATAATTTGAATCACACTTTATCGGTATAACAGTACCGG TAAAAAACTGGCAGGGAAAT
Downstream 100 bases:
>100_bases TGGCGTTGGCTATTTTTGATCTGGATGAAACCTTAGTTTGCGGTGACAGTTGCTCTCTTTTTTGCCAGTTTATGCAGGCT GAAGGTCTGGTTGGCCCTGA
Product: type I phosphodiesterase/nucleotide pyrophosphatase
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 282; Mature: 281
Protein sequence:
>282_residues MSNKVILVVLDGLAYSTAEQCMGFLHALKEQGTATLYKLQCELPSMSRPLYETILTATRPAESGIVHNNVVRNSTQSSIF SLARKNNLTTAAAAYHWFSELYNIAPFDAVRDRFTEAPEQLIQYGCFYNENHYPDCHLYLDAEWLRRKYDPDFLLVHPMN IDDAGHRAGLDSAHYRNTARHSDLSLSYHLPEWIAAGYQILITADHGMNSDKSHGGTLSEERDIPLFVIGDRFSHQAECL PLQTDLCGVVCDLLGIQDHAKPVTEGLLCQAPDENLTYQGAA
Sequences:
>Translated_282_residues MSNKVILVVLDGLAYSTAEQCMGFLHALKEQGTATLYKLQCELPSMSRPLYETILTATRPAESGIVHNNVVRNSTQSSIF SLARKNNLTTAAAAYHWFSELYNIAPFDAVRDRFTEAPEQLIQYGCFYNENHYPDCHLYLDAEWLRRKYDPDFLLVHPMN IDDAGHRAGLDSAHYRNTARHSDLSLSYHLPEWIAAGYQILITADHGMNSDKSHGGTLSEERDIPLFVIGDRFSHQAECL PLQTDLCGVVCDLLGIQDHAKPVTEGLLCQAPDENLTYQGAA >Mature_281_residues SNKVILVVLDGLAYSTAEQCMGFLHALKEQGTATLYKLQCELPSMSRPLYETILTATRPAESGIVHNNVVRNSTQSSIFS LARKNNLTTAAAAYHWFSELYNIAPFDAVRDRFTEAPEQLIQYGCFYNENHYPDCHLYLDAEWLRRKYDPDFLLVHPMNI DDAGHRAGLDSAHYRNTARHSDLSLSYHLPEWIAAGYQILITADHGMNSDKSHGGTLSEERDIPLFVIGDRFSHQAECLP LQTDLCGVVCDLLGIQDHAKPVTEGLLCQAPDENLTYQGAA
Specific function: Unknown
COG id: COG1524
COG function: function code R; Uncharacterized proteins of the AP superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31576; Mature: 31445
Theoretical pI: Translated: 5.27; Mature: 5.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNKVILVVLDGLAYSTAEQCMGFLHALKEQGTATLYKLQCELPSMSRPLYETILTATRP CCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHCCC AESGIVHNNVVRNSTQSSIFSLARKNNLTTAAAAYHWFSELYNIAPFDAVRDRFTEAPEQ CCCCCEECHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH LIQYGCFYNENHYPDCHLYLDAEWLRRKYDPDFLLVHPMNIDDAGHRAGLDSAHYRNTAR HHHHCCCCCCCCCCCEEEEECHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHCCCCC HSDLSLSYHLPEWIAAGYQILITADHGMNSDKSHGGTLSEERDIPLFVIGDRFSHQAECL CCCCEEEECCHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC PLQTDLCGVVCDLLGIQDHAKPVTEGLLCQAPDENLTYQGAA CCCHHHHHHHHHHHCCCHHCCHHHCCCEEECCCCCCEECCCC >Mature Secondary Structure SNKVILVVLDGLAYSTAEQCMGFLHALKEQGTATLYKLQCELPSMSRPLYETILTATRP CCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHCCC AESGIVHNNVVRNSTQSSIFSLARKNNLTTAAAAYHWFSELYNIAPFDAVRDRFTEAPEQ CCCCCEECHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH LIQYGCFYNENHYPDCHLYLDAEWLRRKYDPDFLLVHPMNIDDAGHRAGLDSAHYRNTAR HHHHCCCCCCCCCCCEEEEECHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHCCCCC HSDLSLSYHLPEWIAAGYQILITADHGMNSDKSHGGTLSEERDIPLFVIGDRFSHQAECL CCCCEEEECCHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC PLQTDLCGVVCDLLGIQDHAKPVTEGLLCQAPDENLTYQGAA CCCHHHHHHHHHHHCCCHHCCHHHCCCEEECCCCCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA