| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is tnsC [H]
Identifier: 119946723
GI number: 119946723
Start: 3820109
End: 3821581
Strand: Reverse
Name: tnsC [H]
Synonym: Ping_3107
Alternate gene names: 119946723
Gene position: 3821581-3820109 (Counterclockwise)
Preceding gene: 119946724
Following gene: 119946722
Centisome position: 83.81
GC content: 41.68
Gene sequence:
>1473_bases ATGGCTATTAAGAATAAAAAATTACCAGTGACAATAACCCCCGCGCAATACCGCGATACGGAAGTTGAAGCATATAAAAA CAACCCATTGATACTTGGGTTACCCAATAGAGTCGATCCAAAGCGATTTAGGCAAGTGTTAAGTCAAAGAGTTCCTTCTC CTGAATTCAGCCATCTTTTGGATTCTGACCGGGTTGAAGTGATAAAGCAATTGCGTAAAACCCGTATTATTACGACTGAA CATTTAGATTTGTATAACGAATTGTATGATGCGCTTAGTCATGGCTATGTTGATCGGAATCCCAGCAGGCCGGAGGTAGT CGCATGGAGCTATGATATAGCCGACAATACTATTCCATTAGAGAATATAGAAAGGCCTTATTTAGATGCAATATCGGCTC AAACAACGGCTGATGCTATATTTGTAACAGGGTTCACTGGTAATGGTAAATCAACCATTAATAATCTCATTATGACGGCG CTCTTTCCAATGGTTATTGAACATCACTGGGAGGGGTTTAATGAGCCTCAGATTGTGTTTATTAAGGTAGACATGCCCCA TAACGGCAGTCGTGCGGTCCTTATTGAACGAATATTACAAGAGGTTGATAGAGCGTTAGCGGAGACAAGCTTTGGCAAAA CAAATTATGCTGCGACTTGTAAAACTAAGGGTGGAAAATATACAGATATCTCCAGTATGGAAGGGGTCTTATTAACAGTA TTAAATCGCCATCATGTTGGACTGCTTATTATTGATGAATTTCAAAACCTACAAGTCGCCTCTGTTAGGTTTAGAAACGA AATGCTGCAATTTTTCGACACCTTAATTAATCAGCTCGCGGTGCCAAATATTAAAATAGGTACACCCGACACCATATTGT TATTCGACTCCCAAGGCCGCCACAAGCGGCGAATTGGAATGGTGCTTGAACTTATGCGCTTTGAAGGCGAAAAGGATTGG GACCGCGCGATGAAAGCTATTTTCGGCTTTCAGCCTATTGATAAGCCTATTAAACGCAATGAAAATATTGAAGCGCTTCT CCACGATTTAAGCGCAGGAGTCCCCTCTATATTAATGGCATTATGGGAGGGCTGCCTGATTGAAGCTGTACGCTCTGGTT GTGAAACAGTTACTCAAGCGCTAATTAAGCGTGTTTTTAAAAAGCGTTTCCCGCTTATGCGCTCTGTAACTCGTAATATT AACAAAGGTACTAAAGGTCGGCATTCTGATTTATTGACAGTGCAACAATATTTAGACGCAGGCAATCGCACGCTTGCCTT AAAACATTTGAACCACTTTGCTGTGAACGTTCAAGGGCCGGCGGCACAAGCGGTTAAGCAAGATATTGATGCGCTTATCG AACAGCAAGAGTTCTCGCTAGCTCAATTGAAAAAATTGGATGCCATCAAATTAGGGTTAAAAAAGAATGCTACCGGTCAT CGAGAGCCGCAAACCTTAGAGCACAATGAATGA
Upstream 100 bases:
>100_bases TCACACAACAGCAGGTTTTACCCCAGATAAAAAATCCCCCTTATGATCAAGATGTTTCTGAACACAAGGGATACGCAGAA TTTGATGAGGATGATGAATA
Downstream 100 bases:
>100_bases TGCGAATGCCTGATTTGATGTGCGATGAGCATCTTTATAGCGGCTTTATTCGAGGTCGATTTTTAAGTGGGCAGATGCAT TTAAGTGTTAAGCGATTTTT
Product: transposon Tn7 transposition protein C
Products: NA
Alternate protein names: Protein E [H]
Number of amino acids: Translated: 490; Mature: 489
Protein sequence:
>490_residues MAIKNKKLPVTITPAQYRDTEVEAYKNNPLILGLPNRVDPKRFRQVLSQRVPSPEFSHLLDSDRVEVIKQLRKTRIITTE HLDLYNELYDALSHGYVDRNPSRPEVVAWSYDIADNTIPLENIERPYLDAISAQTTADAIFVTGFTGNGKSTINNLIMTA LFPMVIEHHWEGFNEPQIVFIKVDMPHNGSRAVLIERILQEVDRALAETSFGKTNYAATCKTKGGKYTDISSMEGVLLTV LNRHHVGLLIIDEFQNLQVASVRFRNEMLQFFDTLINQLAVPNIKIGTPDTILLFDSQGRHKRRIGMVLELMRFEGEKDW DRAMKAIFGFQPIDKPIKRNENIEALLHDLSAGVPSILMALWEGCLIEAVRSGCETVTQALIKRVFKKRFPLMRSVTRNI NKGTKGRHSDLLTVQQYLDAGNRTLALKHLNHFAVNVQGPAAQAVKQDIDALIEQQEFSLAQLKKLDAIKLGLKKNATGH REPQTLEHNE
Sequences:
>Translated_490_residues MAIKNKKLPVTITPAQYRDTEVEAYKNNPLILGLPNRVDPKRFRQVLSQRVPSPEFSHLLDSDRVEVIKQLRKTRIITTE HLDLYNELYDALSHGYVDRNPSRPEVVAWSYDIADNTIPLENIERPYLDAISAQTTADAIFVTGFTGNGKSTINNLIMTA LFPMVIEHHWEGFNEPQIVFIKVDMPHNGSRAVLIERILQEVDRALAETSFGKTNYAATCKTKGGKYTDISSMEGVLLTV LNRHHVGLLIIDEFQNLQVASVRFRNEMLQFFDTLINQLAVPNIKIGTPDTILLFDSQGRHKRRIGMVLELMRFEGEKDW DRAMKAIFGFQPIDKPIKRNENIEALLHDLSAGVPSILMALWEGCLIEAVRSGCETVTQALIKRVFKKRFPLMRSVTRNI NKGTKGRHSDLLTVQQYLDAGNRTLALKHLNHFAVNVQGPAAQAVKQDIDALIEQQEFSLAQLKKLDAIKLGLKKNATGH REPQTLEHNE >Mature_489_residues AIKNKKLPVTITPAQYRDTEVEAYKNNPLILGLPNRVDPKRFRQVLSQRVPSPEFSHLLDSDRVEVIKQLRKTRIITTEH LDLYNELYDALSHGYVDRNPSRPEVVAWSYDIADNTIPLENIERPYLDAISAQTTADAIFVTGFTGNGKSTINNLIMTAL FPMVIEHHWEGFNEPQIVFIKVDMPHNGSRAVLIERILQEVDRALAETSFGKTNYAATCKTKGGKYTDISSMEGVLLTVL NRHHVGLLIIDEFQNLQVASVRFRNEMLQFFDTLINQLAVPNIKIGTPDTILLFDSQGRHKRRIGMVLELMRFEGEKDWD RAMKAIFGFQPIDKPIKRNENIEALLHDLSAGVPSILMALWEGCLIEAVRSGCETVTQALIKRVFKKRFPLMRSVTRNIN KGTKGRHSDLLTVQQYLDAGNRTLALKHLNHFAVNVQGPAAQAVKQDIDALIEQQEFSLAQLKKLDAIKLGLKKNATGHR EPQTLEHNE
Specific function: TnsABC + tnsD promote high-frequency insertion of Tn7 into a specific target site known as att-Tn7 whereas tnsABC + tnsE promote low-frequency insertion into many different sites [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR003959 - InterPro: IPR021542 [H]
Pfam domain/function: PF00004 AAA; PF11426 Tn7_TnsC [H]
EC number: NA
Molecular weight: Translated: 55542; Mature: 55411
Theoretical pI: Translated: 8.96; Mature: 8.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIKNKKLPVTITPAQYRDTEVEAYKNNPLILGLPNRVDPKRFRQVLSQRVPSPEFSHLL CCCCCCCCCEEECCCCCCCCCHHEECCCCEEEECCCCCCHHHHHHHHHHHCCCCHHHHHH DSDRVEVIKQLRKTRIITTEHLDLYNELYDALSHGYVDRNPSRPEVVAWSYDIADNTIPL CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCH ENIERPYLDAISAQTTADAIFVTGFTGNGKSTINNLIMTALFPMVIEHHWEGFNEPQIVF HHCCCHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE IKVDMPHNGSRAVLIERILQEVDRALAETSFGKTNYAATCKTKGGKYTDISSMEGVLLTV EEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH LNRHHVGLLIIDEFQNLQVASVRFRNEMLQFFDTLINQLAVPNIKIGTPDTILLFDSQGR HCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEEECCCCC HKRRIGMVLELMRFEGEKDWDRAMKAIFGFQPIDKPIKRNENIEALLHDLSAGVPSILMA HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHCCHHHHHHH LWEGCLIEAVRSGCETVTQALIKRVFKKRFPLMRSVTRNINKGTKGRHSDLLTVQQYLDA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC GNRTLALKHLNHFAVNVQGPAAQAVKQDIDALIEQQEFSLAQLKKLDAIKLGLKKNATGH CCCEEEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC REPQTLEHNE CCCCCCCCCC >Mature Secondary Structure AIKNKKLPVTITPAQYRDTEVEAYKNNPLILGLPNRVDPKRFRQVLSQRVPSPEFSHLL CCCCCCCCEEECCCCCCCCCHHEECCCCEEEECCCCCCHHHHHHHHHHHCCCCHHHHHH DSDRVEVIKQLRKTRIITTEHLDLYNELYDALSHGYVDRNPSRPEVVAWSYDIADNTIPL CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCH ENIERPYLDAISAQTTADAIFVTGFTGNGKSTINNLIMTALFPMVIEHHWEGFNEPQIVF HHCCCHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE IKVDMPHNGSRAVLIERILQEVDRALAETSFGKTNYAATCKTKGGKYTDISSMEGVLLTV EEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH LNRHHVGLLIIDEFQNLQVASVRFRNEMLQFFDTLINQLAVPNIKIGTPDTILLFDSQGR HCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEEECCCCC HKRRIGMVLELMRFEGEKDWDRAMKAIFGFQPIDKPIKRNENIEALLHDLSAGVPSILMA HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHCCHHHHHHH LWEGCLIEAVRSGCETVTQALIKRVFKKRFPLMRSVTRNINKGTKGRHSDLLTVQQYLDA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC GNRTLALKHLNHFAVNVQGPAAQAVKQDIDALIEQQEFSLAQLKKLDAIKLGLKKNATGH CCCEEEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC REPQTLEHNE CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2156235; 3022239; 1655576; 1317955 [H]