Definition | Psychromonas ingrahamii 37, complete genome. |
---|---|
Accession | NC_008709 |
Length | 4,559,598 |
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The map label for this gene is topA [H]
Identifier: 119945658
GI number: 119945658
Start: 2396646
End: 2399297
Strand: Reverse
Name: topA [H]
Synonym: Ping_1971
Alternate gene names: 119945658
Gene position: 2399297-2396646 (Counterclockwise)
Preceding gene: 229358029
Following gene: 119945657
Centisome position: 52.62
GC content: 43.74
Gene sequence:
>2652_bases ATGAGCAAATTTCTTGTTATTGTGGAGTCTCCGGCAAAAGCAAAAACGATCAATAAATATCTGGGCAAAGACTTTATTGT AAAATCAAGCGTAGGTCATATTCGGGATCTTCCAACCAGCGGTAGTGCGAAGAAAAAGATAGAGGCTAAAGGAACTAAGT CTTTGGCAGGTATGACTCCCGCTAAAAAAGAAAAAGAAAAAGCAAAACGCACACAAAGTGCCTTGGTCGCTAGAATGGGT GTTGATCCTAATGATCACTGGAAAGCAAATTATGAGATTTTACCGGGCAAAGAAAAAGTAGTTGCAGAATTACAAAAATT GGCTGTTGATGCCCCCATTATCTATCTCGCAACGGATTTGGATAGAGAGGGAGAAGCGATTGCCTGGCATTTAAGAGAAG TGCTGGGTGGTGAACACCAGAAATATAAACGTGTTGTTTTTAATGAAATTACTGAAACTGCTATTCAGGAGGCTTTTGAG CATCCTACCGAATTAAATATTGATGGTGTTAATGCTCAGCAAACCCGCCGTTTTTTAGATCGGGTGGTGGGTTTTATGGT TTCTCCGTTACTTTGGAAAAAGGTTGCCCGGGGATTATCCGCTGGCAGGGTTCAATCTGTTGCAGTGCGTTTGGTCGTTG AACGTGAACGTTTAATTAAAGTGTTTAACCCCGTTGAGTTCTGGGATTTACATGCAGATGTGCAGGATAAGACCAAATCT GATTTGCGTTTAGAAGTCTTTAAAGAAAACGGTAAATTTTTTAAGCCTGTGACTGAAACTGAAACACTTAAAGCGGTCGA TCATCTTAAATCAGCCGAATATAAAGTACTGTCACGTGAAGATAAACCAACAACCAGTAAGCCAAGTGCTCCTTTTATAA CTTCGACCCTGCAACAGGCTGCGAGCACCCGTTTAAGCTTTGGTGTTAAAAAGACCATGATGCTGGCGCAACGTCTTTAT GAAGCCGGTTATATCACCTATATGCGTACCGATTCGACTAACCTGAGTAAAGAGGCAGTGGGGAGTGCGCGAGACTTCAT CAGTGATGAATTTGGCAAAAATTATTTACCGGCAGAACCGGTCGTTTATAGCAGCAAATCGGGCGCGCAAGAAGCCCATG AAGCAATACGTCCGTCCGATGTCGGCCAATTAGCGGCCTTACTGGTTGGCGTCGACCGTGATGCGCAACGTTTGTATGAA CTTATTTGGCGTCAGTTTCTAGCCTGTCAAATGCTCCCTGCTTTGTACGATGCAACCACGCTTGTGGTACAGGCGGGTGA TTATCAGCTGCGTGCCAAGGGGCGTACACTGCGCTTTGCAGGTTGGACAAAGGTGCAGCCTGTGGCTAAAACTCAGGTGG ATGAAGTACAGTTCCCAGAGCTCGCCATTGGTGAGGTACTGGAATTAGTCGAGTTGGATCCTAAGCAGCACTTTACTAAA CCCCCTGCACGTTTTACAGAAGCGGCTTTAGTTAAAGAGCTGGAGAAACAAGGTATTGGCCGTCCATCGACCTATGCCAG TATTATTTCAACCATTCAGGATCGTGGTTATGTCAAAGTCGATAAGCGGCGTTTTTATGCGGTTAAAATGGGGGAGATTG TAAGCGATCGTCTTAGTGAAAATTTTGTTGAGTTAATGAGTTATGATTTTACCGCGCAAATGGAACGTAATCTTGATGCC ATTGCAGAAGGGAAAGCTAATTGGACTGAACAATTAGATGATTTCTATCAGGATCTCACCACACTGTTAGAGAAAGCCGA ACGAGATCCTGAAGAAGGCGGTATGCGCCTTAATGAACCGGTTATCATTAAGGAGATACATTGTCCTACTTGTGATCGTG AAATGGGCATCAGAACAGCTTCAACGGGGGTCTTTTTAGGCTGTTCTGGATATGCTCTGCCGCCTAAAGAACGCTGTAAA ACAACCATCAATTTAGTGGATGGTGAAGAGGTTGTTGATCTTCTATCAAGCGAAGATTTAGAGACCGCTGCGTTAATGGC TAAACAACGTTGCCCTAAATGCGATATGGCCATGGACAGTTATCTGGTTGATGAGAAAAGAAAACTGCATGTTTGTGGTA ATAACCCGCTGTGCGATGGTCATCTTGTTGAATATGGTGAATTCAAAATCAAAGGTTATGACGGTCCCGTTGTTGAATGT GACAAGTGTGGCAGTGATATGCAGTTAAAAGATGGCCGTTTTGGAAAATATATGGGCTGCACTAATGAAGAGTGTAAAAA TACCCGTAAAATTTTACGCAGTGGCGAAGTTGCGCCGCCTAAAGAAGATCCTGTTGATCTGCCGGAATTAGAGTGTGAGC AAAGTGATGCGCATTTCATTCTCAGAGATGGTGCCTCGGGTATTTTCTTAGCGGCAAATACGTTTCCTCGTTCTCGAGAA ACGCGTGCGCCTAAGGTCGCTGAACTGGCGCGTTTTAAAGATCGTATTTCGCCAAAATTTTATTATTTGGCCGAAGCACC GCAAAAAGACCCAGAGGGTAATTTAGCGGTTGTTCGTTACAGTCGGAAAAACAAAGAACAGTATGTGATGACTGAGATTG ACAAGAAAGCGACTGGCTGGACCGCAAAGTACATTGATGGTAAATGGGTTGAAGAACAGACTAAAAAACGGGCTGTTAAA GCGAAGAAATAA
Upstream 100 bases:
>100_bases ATTCGATTAAAGTTTGGCTTATATAAAAAGGGAATTCATTAGAAGAATGTAAATTTAAGTTTCTTTTCCGCGATTATGAC TATTTAGGTATGTAAGTATT
Downstream 100 bases:
>100_bases AGGCATTTTTCGTTGGTAGCGATTAGCTAACATAGTGAATGATATTTACATTGACACTCAGGCGCTTTATCTTGTATTGA GAGCAGTTCTTGGTAAAGCT
Product: DNA topoisomerase I
Products: NA
Alternate protein names: DNA topoisomerase I; Omega-protein; Relaxing enzyme; Swivelase; Untwisting enzyme [H]
Number of amino acids: Translated: 883; Mature: 882
Protein sequence:
>883_residues MSKFLVIVESPAKAKTINKYLGKDFIVKSSVGHIRDLPTSGSAKKKIEAKGTKSLAGMTPAKKEKEKAKRTQSALVARMG VDPNDHWKANYEILPGKEKVVAELQKLAVDAPIIYLATDLDREGEAIAWHLREVLGGEHQKYKRVVFNEITETAIQEAFE HPTELNIDGVNAQQTRRFLDRVVGFMVSPLLWKKVARGLSAGRVQSVAVRLVVERERLIKVFNPVEFWDLHADVQDKTKS DLRLEVFKENGKFFKPVTETETLKAVDHLKSAEYKVLSREDKPTTSKPSAPFITSTLQQAASTRLSFGVKKTMMLAQRLY EAGYITYMRTDSTNLSKEAVGSARDFISDEFGKNYLPAEPVVYSSKSGAQEAHEAIRPSDVGQLAALLVGVDRDAQRLYE LIWRQFLACQMLPALYDATTLVVQAGDYQLRAKGRTLRFAGWTKVQPVAKTQVDEVQFPELAIGEVLELVELDPKQHFTK PPARFTEAALVKELEKQGIGRPSTYASIISTIQDRGYVKVDKRRFYAVKMGEIVSDRLSENFVELMSYDFTAQMERNLDA IAEGKANWTEQLDDFYQDLTTLLEKAERDPEEGGMRLNEPVIIKEIHCPTCDREMGIRTASTGVFLGCSGYALPPKERCK TTINLVDGEEVVDLLSSEDLETAALMAKQRCPKCDMAMDSYLVDEKRKLHVCGNNPLCDGHLVEYGEFKIKGYDGPVVEC DKCGSDMQLKDGRFGKYMGCTNEECKNTRKILRSGEVAPPKEDPVDLPELECEQSDAHFILRDGASGIFLAANTFPRSRE TRAPKVAELARFKDRISPKFYYLAEAPQKDPEGNLAVVRYSRKNKEQYVMTEIDKKATGWTAKYIDGKWVEEQTKKRAVK AKK
Sequences:
>Translated_883_residues MSKFLVIVESPAKAKTINKYLGKDFIVKSSVGHIRDLPTSGSAKKKIEAKGTKSLAGMTPAKKEKEKAKRTQSALVARMG VDPNDHWKANYEILPGKEKVVAELQKLAVDAPIIYLATDLDREGEAIAWHLREVLGGEHQKYKRVVFNEITETAIQEAFE HPTELNIDGVNAQQTRRFLDRVVGFMVSPLLWKKVARGLSAGRVQSVAVRLVVERERLIKVFNPVEFWDLHADVQDKTKS DLRLEVFKENGKFFKPVTETETLKAVDHLKSAEYKVLSREDKPTTSKPSAPFITSTLQQAASTRLSFGVKKTMMLAQRLY EAGYITYMRTDSTNLSKEAVGSARDFISDEFGKNYLPAEPVVYSSKSGAQEAHEAIRPSDVGQLAALLVGVDRDAQRLYE LIWRQFLACQMLPALYDATTLVVQAGDYQLRAKGRTLRFAGWTKVQPVAKTQVDEVQFPELAIGEVLELVELDPKQHFTK PPARFTEAALVKELEKQGIGRPSTYASIISTIQDRGYVKVDKRRFYAVKMGEIVSDRLSENFVELMSYDFTAQMERNLDA IAEGKANWTEQLDDFYQDLTTLLEKAERDPEEGGMRLNEPVIIKEIHCPTCDREMGIRTASTGVFLGCSGYALPPKERCK TTINLVDGEEVVDLLSSEDLETAALMAKQRCPKCDMAMDSYLVDEKRKLHVCGNNPLCDGHLVEYGEFKIKGYDGPVVEC DKCGSDMQLKDGRFGKYMGCTNEECKNTRKILRSGEVAPPKEDPVDLPELECEQSDAHFILRDGASGIFLAANTFPRSRE TRAPKVAELARFKDRISPKFYYLAEAPQKDPEGNLAVVRYSRKNKEQYVMTEIDKKATGWTAKYIDGKWVEEQTKKRAVK AKK >Mature_882_residues SKFLVIVESPAKAKTINKYLGKDFIVKSSVGHIRDLPTSGSAKKKIEAKGTKSLAGMTPAKKEKEKAKRTQSALVARMGV DPNDHWKANYEILPGKEKVVAELQKLAVDAPIIYLATDLDREGEAIAWHLREVLGGEHQKYKRVVFNEITETAIQEAFEH PTELNIDGVNAQQTRRFLDRVVGFMVSPLLWKKVARGLSAGRVQSVAVRLVVERERLIKVFNPVEFWDLHADVQDKTKSD LRLEVFKENGKFFKPVTETETLKAVDHLKSAEYKVLSREDKPTTSKPSAPFITSTLQQAASTRLSFGVKKTMMLAQRLYE AGYITYMRTDSTNLSKEAVGSARDFISDEFGKNYLPAEPVVYSSKSGAQEAHEAIRPSDVGQLAALLVGVDRDAQRLYEL IWRQFLACQMLPALYDATTLVVQAGDYQLRAKGRTLRFAGWTKVQPVAKTQVDEVQFPELAIGEVLELVELDPKQHFTKP PARFTEAALVKELEKQGIGRPSTYASIISTIQDRGYVKVDKRRFYAVKMGEIVSDRLSENFVELMSYDFTAQMERNLDAI AEGKANWTEQLDDFYQDLTTLLEKAERDPEEGGMRLNEPVIIKEIHCPTCDREMGIRTASTGVFLGCSGYALPPKERCKT TINLVDGEEVVDLLSSEDLETAALMAKQRCPKCDMAMDSYLVDEKRKLHVCGNNPLCDGHLVEYGEFKIKGYDGPVVECD KCGSDMQLKDGRFGKYMGCTNEECKNTRKILRSGEVAPPKEDPVDLPELECEQSDAHFILRDGASGIFLAANTFPRSRET RAPKVAELARFKDRISPKFYYLAEAPQKDPEGNLAVVRYSRKNKEQYVMTEIDKKATGWTAKYIDGKWVEEQTKKRAVKA KK
Specific function: The reaction catalyzed by topoisomerases leads to the conversion of one topological isomer of DNA to another [H]
COG id: COG0550
COG function: function code L; Topoisomerase IA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
Organism=Homo sapiens, GI4507635, Length=504, Percent_Identity=28.1746031746032, Blast_Score=137, Evalue=4e-32, Organism=Homo sapiens, GI10835218, Length=570, Percent_Identity=25.6140350877193, Blast_Score=129, Evalue=1e-29, Organism=Escherichia coli, GI1787529, Length=871, Percent_Identity=69.6900114810563, Blast_Score=1257, Evalue=0.0, Organism=Escherichia coli, GI1788061, Length=555, Percent_Identity=23.4234234234234, Blast_Score=97, Evalue=5e-21, Organism=Caenorhabditis elegans, GI32563869, Length=591, Percent_Identity=24.8730964467005, Blast_Score=132, Evalue=6e-31, Organism=Caenorhabditis elegans, GI17555378, Length=518, Percent_Identity=24.7104247104247, Blast_Score=113, Evalue=5e-25, Organism=Saccharomyces cerevisiae, GI6323263, Length=539, Percent_Identity=25.0463821892393, Blast_Score=122, Evalue=2e-28, Organism=Drosophila melanogaster, GI24640096, Length=489, Percent_Identity=28.0163599182004, Blast_Score=123, Evalue=5e-28, Organism=Drosophila melanogaster, GI24585251, Length=568, Percent_Identity=25.5281690140845, Blast_Score=121, Evalue=2e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003601 - InterPro: IPR013497 - InterPro: IPR013824 - InterPro: IPR013825 - InterPro: IPR000380 - InterPro: IPR003602 - InterPro: IPR013498 - InterPro: IPR005733 - InterPro: IPR013263 - InterPro: IPR006171 [H]
Pfam domain/function: PF08272 Topo_Zn_Ribbon; PF01131 Topoisom_bac; PF01751 Toprim; PF01396 zf-C4_Topoisom [H]
EC number: =5.99.1.2 [H]
Molecular weight: Translated: 99331; Mature: 99200
Theoretical pI: Translated: 8.06; Mature: 8.06
Prosite motif: PS00396 TOPOISOMERASE_I_PROK
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKFLVIVESPAKAKTINKYLGKDFIVKSSVGHIRDLPTSGSAKKKIEAKGTKSLAGMTP CCCEEEEEECCCHHHHHHHHHCCCCEEECCCCHHHCCCCCCCCHHHHHCCCCHHHCCCCC AKKEKEKAKRTQSALVARMGVDPNDHWKANYEILPGKEKVVAELQKLAVDAPIIYLATDL CHHHHHHHHHHHHHHHHHHCCCCCCCCEECEEECCCHHHHHHHHHHHHCCCCEEEEEECC DREGEAIAWHLREVLGGEHQKYKRVVFNEITETAIQEAFEHPTELNIDGVNAQQTRRFLD CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH RVVGFMVSPLLWKKVARGLSAGRVQSVAVRLVVERERLIKVFNPVEFWDLHADVQDKTKS HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHCCCC DLRLEVFKENGKFFKPVTETETLKAVDHLKSAEYKVLSREDKPTTSKPSAPFITSTLQQA CCEEEEEECCCCEECCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCHHHHHHHHH ASTRLSFGVKKTMMLAQRLYEAGYITYMRTDSTNLSKEAVGSARDFISDEFGKNYLPAEP HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC VVYSSKSGAQEAHEAIRPSDVGQLAALLVGVDRDAQRLYELIWRQFLACQMLPALYDATT EEECCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEE LVVQAGDYQLRAKGRTLRFAGWTKVQPVAKTQVDEVQFPELAIGEVLELVELDPKQHFTK EEEECCCEEEEECCCEEEECCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHCCC PPARFTEAALVKELEKQGIGRPSTYASIISTIQDRGYVKVDKRRFYAVKMGEIVSDRLSE CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECCEEEEEHHHHHHHHHHHH NFVELMSYDFTAQMERNLDAIAEGKANWTEQLDDFYQDLTTLLEKAERDPEEGGMRLNEP HHHHHHHCCHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCC VIIKEIHCPTCDREMGIRTASTGVFLGCSGYALPPKERCKTTINLVDGEEVVDLLSSEDL EEEEEECCCCCCHHHCCEEECCCEEEECCCCCCCCHHHHHHEEEECCHHHHHHHHCCCCH ETAALMAKQRCPKCDMAMDSYLVDEKRKLHVCGNNPLCDGHLVEYGEFKIKGYDGPVVEC HHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCEEEECCCCCEEEC DKCGSDMQLKDGRFGKYMGCTNEECKNTRKILRSGEVAPPKEDPVDLPELECEQSDAHFI CCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEE LRDGASGIFLAANTFPRSRETRAPKVAELARFKDRISPKFYYLAEAPQKDPEGNLAVVRY EECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEE SRKNKEQYVMTEIDKKATGWTAKYIDGKWVEEQTKKRAVKAKK CCCCCCHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHCCCC >Mature Secondary Structure SKFLVIVESPAKAKTINKYLGKDFIVKSSVGHIRDLPTSGSAKKKIEAKGTKSLAGMTP CCEEEEEECCCHHHHHHHHHCCCCEEECCCCHHHCCCCCCCCHHHHHCCCCHHHCCCCC AKKEKEKAKRTQSALVARMGVDPNDHWKANYEILPGKEKVVAELQKLAVDAPIIYLATDL CHHHHHHHHHHHHHHHHHHCCCCCCCCEECEEECCCHHHHHHHHHHHHCCCCEEEEEECC DREGEAIAWHLREVLGGEHQKYKRVVFNEITETAIQEAFEHPTELNIDGVNAQQTRRFLD CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH RVVGFMVSPLLWKKVARGLSAGRVQSVAVRLVVERERLIKVFNPVEFWDLHADVQDKTKS HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHCCCC DLRLEVFKENGKFFKPVTETETLKAVDHLKSAEYKVLSREDKPTTSKPSAPFITSTLQQA CCEEEEEECCCCEECCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCHHHHHHHHH ASTRLSFGVKKTMMLAQRLYEAGYITYMRTDSTNLSKEAVGSARDFISDEFGKNYLPAEP HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC VVYSSKSGAQEAHEAIRPSDVGQLAALLVGVDRDAQRLYELIWRQFLACQMLPALYDATT EEECCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEE LVVQAGDYQLRAKGRTLRFAGWTKVQPVAKTQVDEVQFPELAIGEVLELVELDPKQHFTK EEEECCCEEEEECCCEEEECCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHCCC PPARFTEAALVKELEKQGIGRPSTYASIISTIQDRGYVKVDKRRFYAVKMGEIVSDRLSE CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECCEEEEEHHHHHHHHHHHH NFVELMSYDFTAQMERNLDAIAEGKANWTEQLDDFYQDLTTLLEKAERDPEEGGMRLNEP HHHHHHHCCHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCC VIIKEIHCPTCDREMGIRTASTGVFLGCSGYALPPKERCKTTINLVDGEEVVDLLSSEDL EEEEEECCCCCCHHHCCEEECCCEEEECCCCCCCCHHHHHHEEEECCHHHHHHHHCCCCH ETAALMAKQRCPKCDMAMDSYLVDEKRKLHVCGNNPLCDGHLVEYGEFKIKGYDGPVVEC HHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCEEEECCCCCEEEC DKCGSDMQLKDGRFGKYMGCTNEECKNTRKILRSGEVAPPKEDPVDLPELECEQSDAHFI CCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEE LRDGASGIFLAANTFPRSRETRAPKVAELARFKDRISPKFYYLAEAPQKDPEGNLAVVRY EECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEE SRKNKEQYVMTEIDKKATGWTAKYIDGKWVEEQTKKRAVKAKK CCCCCCHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3029379; 9097039; 9278503; 3032952; 8114910; 7779808 [H]