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The map label for this gene is sohB [H]

Identifier: 229358029

GI number: 229358029

Start: 2399488

End: 2400537

Strand: Reverse

Name: sohB [H]

Synonym: Ping_1972

Alternate gene names: 229358029

Gene position: 2400537-2399488 (Counterclockwise)

Preceding gene: 119945661

Following gene: 119945658

Centisome position: 52.65

GC content: 38.0

Gene sequence:

>1050_bases
TTGGAATATGTTATCGAATATGGTTTGTTTTTCGCAAAAATAGTGACTTTCGCTATTGCTATTATTGCAGTTGTTGCTGC
TGTTATTGCCCTGGTAAGTAAACAAAAAAACAAGAAAGGGGAATTACAACTGATTGACTTGTCAGAGCACCTGAAAGAAA
CAAAGAAAACAATTGAAGAAAAATTACTCACCCATCACCAGTTAAAAGCGCGTCATAAAGAAGAGAAAAAAAATCAAAAA
GAGACAGACAAAGCCGCAAAAAAAGCAGCAAAATCAGGTCTGGATGAAAAAGGATTAGCACAACTTTATGTAATCGATTT
TAAAGGCAGTATTGATGCTAAAGAAGTGACCTCTCTGCGCGAGGAAATCACTGCTATTTTAGGGGTGGCAACAGAGCAGG
ATGAAGTCTTTGTCCGTTTAGAAAGTGGTGGTGGTATGGTGCATGGTTACGGTCTTGCTGCTTCGCAACTGCAACGTTTA
AGAGATCATAAGATTCCATTAACAATATCGGTTGATAAAGTCGCTGCCAGTGGTGGTTATATGATGGCCTGTGTTGCGAA
TAAAATCATCGCTGCCCCTTTTGCAATTTTAGGGTCAATTGGTGTTATTGCCCAGATCCCAAACTTTAATAAAGTATTAA
AAAAGCACGACATAGAATTTGAGCAATTAACGGCAGGTGAATACAAACGCACATTAACCATGTTCGGGGAAAATGATCAG
GCAGGGCGTGATAAGTTTAAGCAGGAATTAGAGGAAACACATGATCTATTTAAACAATTTGTTAGCCAACAGCGCAGTCA
AATTGATATTGATAAAGTGGCAACTGGTGAACATTGGTATGGGCTGCAGGCGATAGAACGCAATTTAGTTGATCAGATAT
CTACCAGTGATGACTATTTGTTAACTCAGCTGGACAGCCGTCACATCATTCAAATTAAGTACACTCAGCGTAAGAAATTT
GCGGATAAACTTGGACACGCTGCTGTTATTGCTTTAGAAAATAGTCTGTTAAAAATATTTCAAACGCAGTCTAATAAATT
ATTTAAGTAA

Upstream 100 bases:

>100_bases
CAATCTTAACTTTATTTTAATAAAAGACTCAATCTCTTTTGTGCCTGGCCGTGCTTTTTGTCATTATATGGCAAATAAAA
TCAACAATAGGAATAAAATT

Downstream 100 bases:

>100_bases
TAGTGTTTTTTTTAAACGAATGTAAAAGCGAACTCGAATAAAAGTAACTTATTTGTCCAAAATAGTGCATTTTTTAAAAT
ATAGGTTGCTATTCGATTAA

Product: putative periplasmic protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MEYVIEYGLFFAKIVTFAIAIIAVVAAVIALVSKQKNKKGELQLIDLSEHLKETKKTIEEKLLTHHQLKARHKEEKKNQK
ETDKAAKKAAKSGLDEKGLAQLYVIDFKGSIDAKEVTSLREEITAILGVATEQDEVFVRLESGGGMVHGYGLAASQLQRL
RDHKIPLTISVDKVAASGGYMMACVANKIIAAPFAILGSIGVIAQIPNFNKVLKKHDIEFEQLTAGEYKRTLTMFGENDQ
AGRDKFKQELEETHDLFKQFVSQQRSQIDIDKVATGEHWYGLQAIERNLVDQISTSDDYLLTQLDSRHIIQIKYTQRKKF
ADKLGHAAVIALENSLLKIFQTQSNKLFK

Sequences:

>Translated_349_residues
MEYVIEYGLFFAKIVTFAIAIIAVVAAVIALVSKQKNKKGELQLIDLSEHLKETKKTIEEKLLTHHQLKARHKEEKKNQK
ETDKAAKKAAKSGLDEKGLAQLYVIDFKGSIDAKEVTSLREEITAILGVATEQDEVFVRLESGGGMVHGYGLAASQLQRL
RDHKIPLTISVDKVAASGGYMMACVANKIIAAPFAILGSIGVIAQIPNFNKVLKKHDIEFEQLTAGEYKRTLTMFGENDQ
AGRDKFKQELEETHDLFKQFVSQQRSQIDIDKVATGEHWYGLQAIERNLVDQISTSDDYLLTQLDSRHIIQIKYTQRKKF
ADKLGHAAVIALENSLLKIFQTQSNKLFK
>Mature_349_residues
MEYVIEYGLFFAKIVTFAIAIIAVVAAVIALVSKQKNKKGELQLIDLSEHLKETKKTIEEKLLTHHQLKARHKEEKKNQK
ETDKAAKKAAKSGLDEKGLAQLYVIDFKGSIDAKEVTSLREEITAILGVATEQDEVFVRLESGGGMVHGYGLAASQLQRL
RDHKIPLTISVDKVAASGGYMMACVANKIIAAPFAILGSIGVIAQIPNFNKVLKKHDIEFEQLTAGEYKRTLTMFGENDQ
AGRDKFKQELEETHDLFKQFVSQQRSQIDIDKVATGEHWYGLQAIERNLVDQISTSDDYLLTQLDSRHIIQIKYTQRKKF
ADKLGHAAVIALENSLLKIFQTQSNKLFK

Specific function: Multicopy suppressor of the htrA (degP) null phenotype. It is possibly a protease, not essential for bacterial viability [H]

COG id: COG0616

COG function: function code OU; Periplasmic serine proteases (ClpP class)

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S49 family [H]

Homologues:

Organism=Escherichia coli, GI1787527, Length=351, Percent_Identity=54.7008547008547, Blast_Score=360, Evalue=1e-101,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002142
- InterPro:   IPR013703 [H]

Pfam domain/function: PF01343 Peptidase_S49; PF08496 Peptidase_S49_N [H]

EC number: 3.4.21.-

Molecular weight: Translated: 39156; Mature: 39156

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYVIEYGLFFAKIVTFAIAIIAVVAAVIALVSKQKNKKGELQLIDLSEHLKETKKTIEE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHH
KLLTHHQLKARHKEEKKNQKETDKAAKKAAKSGLDEKGLAQLYVIDFKGSIDAKEVTSLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCHHHHHHHH
EEITAILGVATEQDEVFVRLESGGGMVHGYGLAASQLQRLRDHKIPLTISVDKVAASGGY
HHHHHHHHCCCCCCEEEEEEECCCCEEEECCHHHHHHHHHHHCCCCEEEEEHHHHCCCCE
MMACVANKIIAAPFAILGSIGVIAQIPNFNKVLKKHDIEFEQLTAGEYKRTLTMFGENDQ
EHHHHHHHHHHHHHHHHHCCHHHEECCCHHHHHHHHCCCHHHHCHHHHHHHHEEECCCCC
AGRDKFKQELEETHDLFKQFVSQQRSQIDIDKVATGEHWYGLQAIERNLVDQISTSDDYL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCE
LTQLDSRHIIQIKYTQRKKFADKLGHAAVIALENSLLKIFQTQSNKLFK
EEECCCCEEEEEEEHHHHHHHHHHCCEEEEEHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MEYVIEYGLFFAKIVTFAIAIIAVVAAVIALVSKQKNKKGELQLIDLSEHLKETKKTIEE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHH
KLLTHHQLKARHKEEKKNQKETDKAAKKAAKSGLDEKGLAQLYVIDFKGSIDAKEVTSLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCHHHHHHHH
EEITAILGVATEQDEVFVRLESGGGMVHGYGLAASQLQRLRDHKIPLTISVDKVAASGGY
HHHHHHHHCCCCCCEEEEEEECCCCEEEECCHHHHHHHHHHHCCCCEEEEEHHHHCCCCE
MMACVANKIIAAPFAILGSIGVIAQIPNFNKVLKKHDIEFEQLTAGEYKRTLTMFGENDQ
EHHHHHHHHHHHHHHHHHCCHHHEECCCHHHHHHHHCCCHHHHCHHHHHHHHEEECCCCC
AGRDKFKQELEETHDLFKQFVSQQRSQIDIDKVATGEHWYGLQAIERNLVDQISTSDDYL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCE
LTQLDSRHIIQIKYTQRKKFADKLGHAAVIALENSLLKIFQTQSNKLFK
EEECCCCEEEEEEEHHHHHHHHHHCCEEEEEHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1885549; 9097039; 9278503; 3029379 [H]