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The map label for this gene is patM [H]

Identifier: 119945610

GI number: 119945610

Start: 2344874

End: 2345545

Strand: Reverse

Name: patM [H]

Synonym: Ping_1919

Alternate gene names: 119945610

Gene position: 2345545-2344874 (Counterclockwise)

Preceding gene: 119945611

Following gene: 119945609

Centisome position: 51.44

GC content: 38.84

Gene sequence:

>672_bases
ATGCAAATGTCATTAGATGTTCAATATATTCTTGAACTATTACCTATCTTACTTAAATACCTTAGCGTCACCATGGAAAT
GGCCCTGTTGGGTTTTTGCTTTGCAATCATACTCGCTGTTATTTTAGCGGTAGTGCGCGTATTTAAGATACCCTTATTGC
ACAACCTGGCGAGTGTCTTTATCTCGTTTTTTCGTGGTACGCCTCTGTTAGTACAACTTTTTTTATTGTATTACGGTTTA
CCCCAAGTGATGCCTATATTTGCAGGCGTAGATGCCTTTAGCGCAGCTATCATTGGTTTAACATTACATTTTTCAGCCTA
TATGGCTGAAAGTATTCGTGCCGCCATTATGGGTGTAGATAAAAGTCAGATGGAAGCTTGTTTAAGTATTGGTATGACAA
GATTACAAGCAATGCGCAGAATAATATTACCGCAAGCCGCTCGGGTCGCAACGCCTTCTTTAATGAATTATTTCATTGAT
ATGATCAAAAGTACTTCCTTGGCATTTACGCTGGGAGTGGCGGAAATAATGGCTAAAGCGCAAATGGAAGCCTCATCAAG
CTTTAAATACTTTGAAAGTTATTTAGCCGTTGCGCTTATTTACTGGGCTGTTATTGAATTATTTTCGCGTCTGCAGCATT
ATCTTGAAATTCGTATGAGTAGAGCTTACTAA

Upstream 100 bases:

>100_bases
TGGTTAGGTTCAGACGTAACCCAATAAACCTCATCATTACCTCAGGTACTGAGAGTATCAGTACCTGCATATTTTTTAAT
CTCCACACGAGCCATTTTCT

Downstream 100 bases:

>100_bases
TGATTAGAGTACAAAATCTAAGCAAAAAATTTGCTGATAACATAGTATTAAATGGGATTGATTTCGAAGTTGAACATGGC
GAAATCGTGGTCATTATCGG

Product: ABC polar amino acid transporter inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MQMSLDVQYILELLPILLKYLSVTMEMALLGFCFAIILAVILAVVRVFKIPLLHNLASVFISFFRGTPLLVQLFLLYYGL
PQVMPIFAGVDAFSAAIIGLTLHFSAYMAESIRAAIMGVDKSQMEACLSIGMTRLQAMRRIILPQAARVATPSLMNYFID
MIKSTSLAFTLGVAEIMAKAQMEASSSFKYFESYLAVALIYWAVIELFSRLQHYLEIRMSRAY

Sequences:

>Translated_223_residues
MQMSLDVQYILELLPILLKYLSVTMEMALLGFCFAIILAVILAVVRVFKIPLLHNLASVFISFFRGTPLLVQLFLLYYGL
PQVMPIFAGVDAFSAAIIGLTLHFSAYMAESIRAAIMGVDKSQMEACLSIGMTRLQAMRRIILPQAARVATPSLMNYFID
MIKSTSLAFTLGVAEIMAKAQMEASSSFKYFESYLAVALIYWAVIELFSRLQHYLEIRMSRAY
>Mature_223_residues
MQMSLDVQYILELLPILLKYLSVTMEMALLGFCFAIILAVILAVVRVFKIPLLHNLASVFISFFRGTPLLVQLFLLYYGL
PQVMPIFAGVDAFSAAIIGLTLHFSAYMAESIRAAIMGVDKSQMEACLSIGMTRLQAMRRIILPQAARVATPSLMNYFID
MIKSTSLAFTLGVAEIMAKAQMEASSSFKYFESYLAVALIYWAVIELFSRLQHYLEIRMSRAY

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=221, Percent_Identity=46.1538461538462, Blast_Score=190, Evalue=6e-50,
Organism=Escherichia coli, GI1787030, Length=218, Percent_Identity=32.1100917431193, Blast_Score=122, Evalue=1e-29,
Organism=Escherichia coli, GI87082239, Length=204, Percent_Identity=32.3529411764706, Blast_Score=103, Evalue=8e-24,
Organism=Escherichia coli, GI1787086, Length=179, Percent_Identity=33.5195530726257, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1786874, Length=189, Percent_Identity=27.5132275132275, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1788646, Length=213, Percent_Identity=29.1079812206573, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1788645, Length=210, Percent_Identity=30.4761904761905, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1786873, Length=218, Percent_Identity=28.4403669724771, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787087, Length=221, Percent_Identity=22.1719457013575, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI48994930, Length=169, Percent_Identity=27.810650887574, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 25056; Mature: 25056

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
6.7 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
6.7 %Met     (Mature Protein)
7.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQMSLDVQYILELLPILLKYLSVTMEMALLGFCFAIILAVILAVVRVFKIPLLHNLASVF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISFFRGTPLLVQLFLLYYGLPQVMPIFAGVDAFSAAIIGLTLHFSAYMAESIRAAIMGVD
HHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KSQMEACLSIGMTRLQAMRRIILPQAARVATPSLMNYFIDMIKSTSLAFTLGVAEIMAKA
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QMEASSSFKYFESYLAVALIYWAVIELFSRLQHYLEIRMSRAY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQMSLDVQYILELLPILLKYLSVTMEMALLGFCFAIILAVILAVVRVFKIPLLHNLASVF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISFFRGTPLLVQLFLLYYGLPQVMPIFAGVDAFSAAIIGLTLHFSAYMAESIRAAIMGVD
HHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KSQMEACLSIGMTRLQAMRRIILPQAARVATPSLMNYFIDMIKSTSLAFTLGVAEIMAKA
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QMEASSSFKYFESYLAVALIYWAVIELFSRLQHYLEIRMSRAY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA