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The map label for this gene is patH [H]

Identifier: 119945611

GI number: 119945611

Start: 2345619

End: 2346377

Strand: Reverse

Name: patH [H]

Synonym: Ping_1920

Alternate gene names: 119945611

Gene position: 2346377-2345619 (Counterclockwise)

Preceding gene: 119945612

Following gene: 119945610

Centisome position: 51.46

GC content: 37.02

Gene sequence:

>759_bases
ATGAAACACCCTATTAAATTAATTATTGCAGCAGCAGTTGCAGTATCCAGTCTTATTACCGTTCCCGCATTTGCGAAAGA
AACAGTCAAAGTAGGCATGTCAGGTAATTATGTCCCTTTCACTTTTTCAGAAAAAGACGTATTACAAGGTTTTGAAGTTG
ATCTCTGGAATGAAATTGCATTACGTGCTGATTATGACGTGAAGTTTGTTTTATCAAGTTTTTCAGGCTTGTTCGGAATG
CTTGAAGCTGGCCATATTGATACTATTTCTAACCAAATAACGATTACGCCTGCACGTTTAGAGCAGTATGCCTTTACAAC
TCCGTATGTAGTTGATGGCGTTCAAATTGTTACTAAAAAGGGTCGTGAAGATATAAATTCAGTTGCTGATCTTAAAGGTA
AAAAAGTAGCAGTGAATTTAGGCAGTAATTTTGAAGAGACATTACGCGCTCTGGATCCTAAACAAGAAATCGATATTATT
ACTTATGATACAGGTTTCGTACAGGATGTTGTTATAGGGCGGACTGATGCTTTTATTATGGATCGTGTTGGCTCTGCGGC
TTTAATCAAAAAATCGGGTTTACCTTTAAAGCTTGCAGGACAACCCTTTGAAAAGATAGAAAACGCAATGCCATTTCTAA
ACAAACCTGAACAGTTAGCTATCAGAGATAAAGTGAACGCGGCATTATTAAGTATGAAAAATGACGGCACATTAGCGAAA
ATTTCTGTTAAATGGTTAGGTTCAGACGTAACCCAATAA

Upstream 100 bases:

>100_bases
ACAAAAACATAACATATGAACATTCGTTATGCATTCCTCAGATAGATATCAGTTATAATCAGGCTTAATAAGTAGTTATG
TTTAACAAGAAGGAATTATC

Downstream 100 bases:

>100_bases
ACCTCATCATTACCTCAGGTACTGAGAGTATCAGTACCTGCATATTTTTTAATCTCCACACGAGCCATTTTCTATGCAAA
TGTCATTAGATGTTCAATAT

Product: ABC amino acid transporter extracellular solute-binding protein, family 3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MKHPIKLIIAAAVAVSSLITVPAFAKETVKVGMSGNYVPFTFSEKDVLQGFEVDLWNEIALRADYDVKFVLSSFSGLFGM
LEAGHIDTISNQITITPARLEQYAFTTPYVVDGVQIVTKKGREDINSVADLKGKKVAVNLGSNFEETLRALDPKQEIDII
TYDTGFVQDVVIGRTDAFIMDRVGSAALIKKSGLPLKLAGQPFEKIENAMPFLNKPEQLAIRDKVNAALLSMKNDGTLAK
ISVKWLGSDVTQ

Sequences:

>Translated_252_residues
MKHPIKLIIAAAVAVSSLITVPAFAKETVKVGMSGNYVPFTFSEKDVLQGFEVDLWNEIALRADYDVKFVLSSFSGLFGM
LEAGHIDTISNQITITPARLEQYAFTTPYVVDGVQIVTKKGREDINSVADLKGKKVAVNLGSNFEETLRALDPKQEIDII
TYDTGFVQDVVIGRTDAFIMDRVGSAALIKKSGLPLKLAGQPFEKIENAMPFLNKPEQLAIRDKVNAALLSMKNDGTLAK
ISVKWLGSDVTQ
>Mature_252_residues
MKHPIKLIIAAAVAVSSLITVPAFAKETVKVGMSGNYVPFTFSEKDVLQGFEVDLWNEIALRADYDVKFVLSSFSGLFGM
LEAGHIDTISNQITITPARLEQYAFTTPYVVDGVQIVTKKGREDINSVADLKGKKVAVNLGSNFEETLRALDPKQEIDII
TYDTGFVQDVVIGRTDAFIMDRVGSAALIKKSGLPLKLAGQPFEKIENAMPFLNKPEQLAIRDKVNAALLSMKNDGTLAK
ISVKWLGSDVTQ

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid [H]

COG id: COG0834

COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 3 family [H]

Homologues:

Organism=Escherichia coli, GI1788228, Length=261, Percent_Identity=37.1647509578544, Blast_Score=157, Evalue=5e-40,
Organism=Escherichia coli, GI1787031, Length=256, Percent_Identity=32.03125, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1787085, Length=248, Percent_Identity=27.8225806451613, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788649, Length=257, Percent_Identity=27.2373540856031, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787088, Length=246, Percent_Identity=28.0487804878049, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1788648, Length=232, Percent_Identity=27.5862068965517, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: 1920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1060 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001638
- InterPro:   IPR018313 [H]

Pfam domain/function: PF00497 SBP_bac_3 [H]

EC number: NA

Molecular weight: Translated: 27539; Mature: 27539

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: PS01039 SBP_BACTERIAL_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHPIKLIIAAAVAVSSLITVPAFAKETVKVGMSGNYVPFTFSEKDVLQGFEVDLWNEIA
CCCHHHHHHHHHHHHHHHHHCCHHHHHHEEECCCCCEEEEEECHHHHHCCCCCCCCCCEE
LRADYDVKFVLSSFSGLFGMLEAGHIDTISNQITITPARLEQYAFTTPYVVDGVQIVTKK
EECCCCHHHHHHHHHHHHHHHCCCCEEECCCEEEEEHHHHHHHCCCCCHHHCCHHEEHHC
GREDINSVADLKGKKVAVNLGSNFEETLRALDPKQEIDIITYDTGFVQDVVIGRTDAFIM
CHHHHHHHHHCCCCEEEEECCCCHHHHHHHCCCCHHEEEEEECCCCHHHHHHCCCCHHHH
DRVGSAALIKKSGLPLKLAGQPFEKIENAMPFLNKPEQLAIRDKVNAALLSMKNDGTLAK
HHCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCHHEEHHHHHCEEEEEECCCCCEEE
ISVKWLGSDVTQ
EEEEECCCCCCC
>Mature Secondary Structure
MKHPIKLIIAAAVAVSSLITVPAFAKETVKVGMSGNYVPFTFSEKDVLQGFEVDLWNEIA
CCCHHHHHHHHHHHHHHHHHCCHHHHHHEEECCCCCEEEEEECHHHHHCCCCCCCCCCEE
LRADYDVKFVLSSFSGLFGMLEAGHIDTISNQITITPARLEQYAFTTPYVVDGVQIVTKK
EECCCCHHHHHHHHHHHHHHHCCCCEEECCCEEEEEHHHHHHHCCCCCHHHCCHHEEHHC
GREDINSVADLKGKKVAVNLGSNFEETLRALDPKQEIDIITYDTGFVQDVVIGRTDAFIM
CHHHHHHHHHCCCCEEEEECCCCHHHHHHHCCCCHHEEEEEECCCCHHHHHHCCCCHHHH
DRVGSAALIKKSGLPLKLAGQPFEKIENAMPFLNKPEQLAIRDKVNAALLSMKNDGTLAK
HHCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCHHEEHHHHHCEEEEEECCCCCEEE
ISVKWLGSDVTQ
EEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA