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The map label for this gene is yciR [C]

Identifier: 119945535

GI number: 119945535

Start: 2230976

End: 2233267

Strand: Reverse

Name: yciR [C]

Synonym: Ping_1839

Alternate gene names: 119945535

Gene position: 2233267-2230976 (Counterclockwise)

Preceding gene: 119945536

Following gene: 119945531

Centisome position: 48.98

GC content: 42.84

Gene sequence:

>2292_bases
ATGAAGACACCTGCAAAGTCAACCAAGCTATCCAGCAAAACGTTACGCCAGCGCGCGGAAGCACAACTGAAAACACAAAC
AGAAATCAAACAAACTATTCCTAGCGACTATGCAGCCAAAAAGATGATACACGAATTGCAGGTTCATCAGATTGAGCTGG
AAATGCAGAATGAGGAGTTAAAGCAAGCACGGATAACCGAAAAATTATATTATCGCTATACCGAGTTATTTGAATTTGCA
CCTATTGCCTATTTTTCTTTCAATCTGAAGGGCGTTGTCAATCAGGTTAATTTACGCGGGGCGAGCCTATTGGATATTGA
ACGCGCTAACTTGGTAGGAAAACAGTTTTCAAACTACTTAACACCCCAAGATCGTGATAAATTCAACCGTTGTCTGGCAA
AAGCATTTGCGGGTGATGGCATACAATCCTTTGAGGTCTTAGCACAGATTGGCAAGCATAAGCGTTGGCTGAATATTGAA
GCCAATCTCGGCATTACCGAAACAGACTGTCTTGCCGCGGTAATTGACATCACCGACCGTAAACGCGCCGATGAAAAACT
CAAACTTGCCGCCAATATATTCACTCATACGCTGGAATGCATTATTATCAGCGATGAAAATGGCTATATTGTTGAGGCTA
ATAAGGCCAGTTGCGATACGACCGGTTATTCAAAAGAGGAGCTGCTGCAATCACATGTCAGCATACTTGAAAGCAGTCAA
TATGAGAAGATAGAGACTGCATTACAAAAAGATAAAAGCTGGCAGGGAGATATGTCATATCGCACAAAAAATGGCGAACA
TCATTATTGCTGGTCAGAAATGTATGTTATTGAGCTCGAAGAAAAAGGGACACTCTGCCGTATCAGTTCCTTTATCGATT
TAAAGCAAAGTACAAGAGTTGAGCCCAAAATACAGTTTTTATCAAAACATGATCCGCTGACCGGGGTATTTAACCGTATT
GCGCTGTTTAACCGATTGGAACAAGTAATAGCCCGGGCAAGCTTTAATCAGCGGATGATGGCGGTGCTGTTAGTGGATAT
TAATGGCTTTAAGGCAATTAATAAACAGCATGGGCATAATGCGGGAGACATGGCTCTACAACAGATTGCAGAACGTCTTA
AAAGCTGTGTTTCTGAAAAAGATACGGTTGCGCGTTTTGGTGGTGATGAGTTTGTTATTATTATTGATGAGTTGCTTAAT
GAACAGGATGTGGCTGATGTCGCGCAAAATATAACCGCGCAATTTGAGCGATACTTTGACATTGACCATTCATCTGCGCA
TCTCTCTGCGACAATCGGGATTGCCCTCTATCCTGACGATGGCACTGATATAGACACGCTATTAGGCAACGCGGAAAAAG
CGATGCAGCGTGGTAAATCCCATATTAACACCACAAAAGAAAGTGATTCTGTTACCGCTACAGCACCCTCTTTAAAAAGC
GGCAAGCTGTCAGCTCAGACCACGACCTATTATTTTTATACTAAAAAGTTGACCCAATATTCACGGCAGCAGGTTAAATT
TAAAGAAGCATTAACACAAGCAGTGGCGCAGGATCAGTTTGAGCTGTACTACCTGCCTCAGTACGATCTGAGTAAACGGC
AAATTGTCGCGCTGGAAGCGCTGTTATGCTGGAATCACCCGCAGCGTGGCGTGCTACATTCGGACAGCTTTATAAGCCTG
GCTGAACATTACGGTTTAGCGGTGCAGATAGGTCTTATTATGATCCGTAAAGCCGCACTGCAGGCGGTAATCTGGCAGAA
AGCGGCAATTAATTTCGGACGTATTGCCATTAATTTAACGGAAGTGCAATTATCACAATTTAGTTTGATTGGAGATCTAC
AGACTATTCTGCTGGAAACGAAGTGTTCAATAGAATGGCTGGAGTTTGAAATCGATGAAGTGACTTTTAAAAGTGATAAC
CCAACCGTTTATGAAAATATTCTCAATATCAGTAAGATGGGCATGGCACTGACCGTTGATAAATTTGGTGCAGATCGTCC
ACTGTTTAGGCTGTTTGAACAGTTAACAATCGATAAATTTAAAATAGCACCCCATTTTACCGATGGGTCTGTCAACTTTG
TTAACCGTGCGCTACAGGATGGGTTTCTTTTTCTGTCCCGCTCATTAGGTGTGACGGTCGTTGCTGACTCACTCGCTAAT
AACACCGACGGTGAGCCCGCAATACCGAATAAAATCTCGAATGAAGTTGAGCCGGCCAGTCAGCAGTTGCACAGTAAAGC
GATGAAGGCCTCTGAAATCACTTTTCATCTGCGCTGTCATAAACGTAAATAA

Upstream 100 bases:

>100_bases
GTACCCAAGAAAATGTCATTGACGGTGTGGTGATAACCTTCACCAATATTAGTGAAGCCAAACTGCTTGAGTCAGAATTA
CGCAAGACGAGGTCCAACCC

Downstream 100 bases:

>100_bases
GCGCTCTTTTTTAAAAAACAATGGTAAAAGCAATGGGATCACATCTTTTCTTTTACCATTTTAAAGTTTAAAAAGAGACT
GAAAAAGAGCAAAAGTACTA

Product: diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 763; Mature: 763

Protein sequence:

>763_residues
MKTPAKSTKLSSKTLRQRAEAQLKTQTEIKQTIPSDYAAKKMIHELQVHQIELEMQNEELKQARITEKLYYRYTELFEFA
PIAYFSFNLKGVVNQVNLRGASLLDIERANLVGKQFSNYLTPQDRDKFNRCLAKAFAGDGIQSFEVLAQIGKHKRWLNIE
ANLGITETDCLAAVIDITDRKRADEKLKLAANIFTHTLECIIISDENGYIVEANKASCDTTGYSKEELLQSHVSILESSQ
YEKIETALQKDKSWQGDMSYRTKNGEHHYCWSEMYVIELEEKGTLCRISSFIDLKQSTRVEPKIQFLSKHDPLTGVFNRI
ALFNRLEQVIARASFNQRMMAVLLVDINGFKAINKQHGHNAGDMALQQIAERLKSCVSEKDTVARFGGDEFVIIIDELLN
EQDVADVAQNITAQFERYFDIDHSSAHLSATIGIALYPDDGTDIDTLLGNAEKAMQRGKSHINTTKESDSVTATAPSLKS
GKLSAQTTTYYFYTKKLTQYSRQQVKFKEALTQAVAQDQFELYYLPQYDLSKRQIVALEALLCWNHPQRGVLHSDSFISL
AEHYGLAVQIGLIMIRKAALQAVIWQKAAINFGRIAINLTEVQLSQFSLIGDLQTILLETKCSIEWLEFEIDEVTFKSDN
PTVYENILNISKMGMALTVDKFGADRPLFRLFEQLTIDKFKIAPHFTDGSVNFVNRALQDGFLFLSRSLGVTVVADSLAN
NTDGEPAIPNKISNEVEPASQQLHSKAMKASEITFHLRCHKRK

Sequences:

>Translated_763_residues
MKTPAKSTKLSSKTLRQRAEAQLKTQTEIKQTIPSDYAAKKMIHELQVHQIELEMQNEELKQARITEKLYYRYTELFEFA
PIAYFSFNLKGVVNQVNLRGASLLDIERANLVGKQFSNYLTPQDRDKFNRCLAKAFAGDGIQSFEVLAQIGKHKRWLNIE
ANLGITETDCLAAVIDITDRKRADEKLKLAANIFTHTLECIIISDENGYIVEANKASCDTTGYSKEELLQSHVSILESSQ
YEKIETALQKDKSWQGDMSYRTKNGEHHYCWSEMYVIELEEKGTLCRISSFIDLKQSTRVEPKIQFLSKHDPLTGVFNRI
ALFNRLEQVIARASFNQRMMAVLLVDINGFKAINKQHGHNAGDMALQQIAERLKSCVSEKDTVARFGGDEFVIIIDELLN
EQDVADVAQNITAQFERYFDIDHSSAHLSATIGIALYPDDGTDIDTLLGNAEKAMQRGKSHINTTKESDSVTATAPSLKS
GKLSAQTTTYYFYTKKLTQYSRQQVKFKEALTQAVAQDQFELYYLPQYDLSKRQIVALEALLCWNHPQRGVLHSDSFISL
AEHYGLAVQIGLIMIRKAALQAVIWQKAAINFGRIAINLTEVQLSQFSLIGDLQTILLETKCSIEWLEFEIDEVTFKSDN
PTVYENILNISKMGMALTVDKFGADRPLFRLFEQLTIDKFKIAPHFTDGSVNFVNRALQDGFLFLSRSLGVTVVADSLAN
NTDGEPAIPNKISNEVEPASQQLHSKAMKASEITFHLRCHKRK
>Mature_763_residues
MKTPAKSTKLSSKTLRQRAEAQLKTQTEIKQTIPSDYAAKKMIHELQVHQIELEMQNEELKQARITEKLYYRYTELFEFA
PIAYFSFNLKGVVNQVNLRGASLLDIERANLVGKQFSNYLTPQDRDKFNRCLAKAFAGDGIQSFEVLAQIGKHKRWLNIE
ANLGITETDCLAAVIDITDRKRADEKLKLAANIFTHTLECIIISDENGYIVEANKASCDTTGYSKEELLQSHVSILESSQ
YEKIETALQKDKSWQGDMSYRTKNGEHHYCWSEMYVIELEEKGTLCRISSFIDLKQSTRVEPKIQFLSKHDPLTGVFNRI
ALFNRLEQVIARASFNQRMMAVLLVDINGFKAINKQHGHNAGDMALQQIAERLKSCVSEKDTVARFGGDEFVIIIDELLN
EQDVADVAQNITAQFERYFDIDHSSAHLSATIGIALYPDDGTDIDTLLGNAEKAMQRGKSHINTTKESDSVTATAPSLKS
GKLSAQTTTYYFYTKKLTQYSRQQVKFKEALTQAVAQDQFELYYLPQYDLSKRQIVALEALLCWNHPQRGVLHSDSFISL
AEHYGLAVQIGLIMIRKAALQAVIWQKAAINFGRIAINLTEVQLSQFSLIGDLQTILLETKCSIEWLEFEIDEVTFKSDN
PTVYENILNISKMGMALTVDKFGADRPLFRLFEQLTIDKFKIAPHFTDGSVNFVNRALQDGFLFLSRSLGVTVVADSLAN
NTDGEPAIPNKISNEVEPASQQLHSKAMKASEITFHLRCHKRK

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=539, Percent_Identity=23.191094619666, Blast_Score=158, Evalue=1e-39,
Organism=Escherichia coli, GI87081921, Length=427, Percent_Identity=23.8875878220141, Blast_Score=112, Evalue=1e-25,
Organism=Escherichia coli, GI87081977, Length=160, Percent_Identity=32.5, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI1788381, Length=341, Percent_Identity=24.0469208211144, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI87081881, Length=276, Percent_Identity=24.6376811594203, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI1788085, Length=160, Percent_Identity=30, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI87082007, Length=170, Percent_Identity=30, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI145693134, Length=172, Percent_Identity=30.2325581395349, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1787816, Length=156, Percent_Identity=30.7692307692308, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1788956, Length=126, Percent_Identity=31.7460317460317, Blast_Score=70, Evalue=7e-13,
Organism=Escherichia coli, GI1786584, Length=94, Percent_Identity=34.0425531914894, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1787802, Length=181, Percent_Identity=27.6243093922652, Blast_Score=66, Evalue=1e-11,
Organism=Escherichia coli, GI87081980, Length=216, Percent_Identity=25.9259259259259, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1787055, Length=203, Percent_Identity=27.0935960591133, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1787262, Length=111, Percent_Identity=31.5315315315315, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 86358; Mature: 86358

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: PS50112 PAS ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTPAKSTKLSSKTLRQRAEAQLKTQTEIKQTIPSDYAAKKMIHELQVHQIELEMQNEEL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEEEECHHHH
KQARITEKLYYRYTELFEFAPIAYFSFNLKGVVNQVNLRGASLLDIERANLVGKQFSNYL
HHHHHHHHHHHHHHHHHHHCCEEEEEEEHHHHHHEECCCCCEEEEHHHHHHHHHHHHHCC
TPQDRDKFNRCLAKAFAGDGIQSFEVLAQIGKHKRWLNIEANLGITETDCLAAVIDITDR
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHCC
KRADEKLKLAANIFTHTLECIIISDENGYIVEANKASCDTTGYSKEELLQSHVSILESSQ
CCCHHHHHHHHHHHHEEEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCH
YEKIETALQKDKSWQGDMSYRTKNGEHHYCWSEMYVIELEEKGTLCRISSFIDLKQSTRV
HHHHHHHHHHCCCCCCCCCEECCCCCCEEEEEEEEEEEEECCCCEEEHHHHHHHHHHCCC
EPKIQFLSKHDPLTGVFNRIALFNRLEQVIARASFNQRMMAVLLVDINGFKAINKQHGHN
CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHCCCC
AGDMALQQIAERLKSCVSEKDTVARFGGDEFVIIIDELLNEQDVADVAQNITAQFERYFD
HHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCC
IDHSSAHLSATIGIALYPDDGTDIDTLLGNAEKAMQRGKSHINTTKESDSVTATAPSLKS
CCCCCCEEEEEEEEEEECCCCCCHHHHHCCHHHHHHHCHHHCCCCCCCCCEEEECCCCCC
GKLSAQTTTYYFYTKKLTQYSRQQVKFKEALTQAVAQDQFELYYLPQYDLSKRQIVALEA
CCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHH
LLCWNHPQRGVLHSDSFISLAEHYGLAVQIGLIMIRKAALQAVIWQKAAINFGRIAINLT
HHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
EVQLSQFSLIGDLQTILLETKCSIEWLEFEIDEVTFKSDNPTVYENILNISKMGMALTVD
EHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEECCCCHHHHHHHHHHHCCEEEEEC
KFGADRPLFRLFEQLTIDKFKIAPHFTDGSVNFVNRALQDGFLFLSRSLGVTVVADSLAN
CCCCCCHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHCC
NTDGEPAIPNKISNEVEPASQQLHSKAMKASEITFHLRCHKRK
CCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHCEEEEEEEECCC
>Mature Secondary Structure
MKTPAKSTKLSSKTLRQRAEAQLKTQTEIKQTIPSDYAAKKMIHELQVHQIELEMQNEEL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEEEECHHHH
KQARITEKLYYRYTELFEFAPIAYFSFNLKGVVNQVNLRGASLLDIERANLVGKQFSNYL
HHHHHHHHHHHHHHHHHHHCCEEEEEEEHHHHHHEECCCCCEEEEHHHHHHHHHHHHHCC
TPQDRDKFNRCLAKAFAGDGIQSFEVLAQIGKHKRWLNIEANLGITETDCLAAVIDITDR
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHCC
KRADEKLKLAANIFTHTLECIIISDENGYIVEANKASCDTTGYSKEELLQSHVSILESSQ
CCCHHHHHHHHHHHHEEEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCH
YEKIETALQKDKSWQGDMSYRTKNGEHHYCWSEMYVIELEEKGTLCRISSFIDLKQSTRV
HHHHHHHHHHCCCCCCCCCEECCCCCCEEEEEEEEEEEEECCCCEEEHHHHHHHHHHCCC
EPKIQFLSKHDPLTGVFNRIALFNRLEQVIARASFNQRMMAVLLVDINGFKAINKQHGHN
CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHCCCC
AGDMALQQIAERLKSCVSEKDTVARFGGDEFVIIIDELLNEQDVADVAQNITAQFERYFD
HHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCC
IDHSSAHLSATIGIALYPDDGTDIDTLLGNAEKAMQRGKSHINTTKESDSVTATAPSLKS
CCCCCCEEEEEEEEEEECCCCCCHHHHHCCHHHHHHHCHHHCCCCCCCCCEEEECCCCCC
GKLSAQTTTYYFYTKKLTQYSRQQVKFKEALTQAVAQDQFELYYLPQYDLSKRQIVALEA
CCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHH
LLCWNHPQRGVLHSDSFISLAEHYGLAVQIGLIMIRKAALQAVIWQKAAINFGRIAINLT
HHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
EVQLSQFSLIGDLQTILLETKCSIEWLEFEIDEVTFKSDNPTVYENILNISKMGMALTVD
EHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEECCCCHHHHHHHHHHHCCEEEEEC
KFGADRPLFRLFEQLTIDKFKIAPHFTDGSVNFVNRALQDGFLFLSRSLGVTVVADSLAN
CCCCCCHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHCC
NTDGEPAIPNKISNEVEPASQQLHSKAMKASEITFHLRCHKRK
CCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]