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The map label for this gene is yciR [C]

Identifier: 119945428

GI number: 119945428

Start: 2096969

End: 2098993

Strand: Reverse

Name: yciR [C]

Synonym: Ping_1723

Alternate gene names: 119945428

Gene position: 2098993-2096969 (Counterclockwise)

Preceding gene: 119945429

Following gene: 119945420

Centisome position: 46.03

GC content: 44.4

Gene sequence:

>2025_bases
ATGACAGAAGCCGTTAATGAAAAAGAAAAACTTATTCAAAAGCGCAAGAAAGAGAAACTTGCTGACGAGCTAATCATCGC
CAATCTTGCTGGTGAACTGGTGATTGCCGCTTCTAAACTTGCCAGCGCCAATAAAGAGCTGACATTTCAAAATAACGAAA
AAGAAAAGCGTACTGCCGAACTTGCCATCGCCAATAAAGAGCTGACATTTCAAAATAACGAAAAAGAAAAACGGGCGGCT
GAGCTTGCCATCGCCAATAAAGAGCTGACATTTCAAAATAACGAAAAAGAGAAGCGTACTGTCGAACTTGCCATCGCCAA
TAAAGAACTTAGTATTGCCGCCATCGTTTTCGAATCCCAAGAAGGCATGATGGTGACCGATGCCAGCAAGATTATTCTTC
GAGTGAATCATGCTTTTACTCATATTACAGGTTATAGCAGCGATGATGCTGTCGGTCAGACACCCAGTCTGCTTAAATCA
GGCATGCACAATAAAGCGTTCTACGCTACCATGTGGAAGAAAATCAACAGCACCGGGTTGTGGGAAGGTGAGATCTTGAC
TCGTCGCAAGAATGGCGAAATCTATCCGGAATATCTGCGCATTACGGCCGTTAAAAATGCGCAGGGCATTGTCACCAACT
ACGTAGCGACACGCACTGATATCACCGCGAGTAAAGCGGCATCGAATGAAATCGAGAAGCTCGCTTTCTATGATCCCCTT
ACGCAGTTACCTAACCGCCGTCTTTTTATTGACCGGCTAAATCAAGCGTTAGCTTTAAGTACCCATAGTCGTCAGCGAGG
CGCGCTGCTGTTTCTCGACTTGGATCAGTTTAAAACACTGAATGACACTCTGGGACATGATATTGGTGATTTGCTGTTAA
AAAAAGTGACAGAGCGCCTGAGTGCCAGCCTTCGAGAAAGCGATACTGTCGCCCGTTTTGGCGGTGATGAGTTTGTGGTG
CTATTGGAAAACCTGAGCACATATAGCATTGAAGCGGCAGCTCAAACTAGAGATATCGCGACAAAAATCAGCCTCTCACT
CAACCAACCTTATCAACTTCTTGATCACGTTTACCATAACACCCCGAGCATAGGCGCCACATTGTTCATTGGCCATCAAC
TGACGGCAGAGGAATTGTTAAAACAGGCAGATATTGCGATGTATCAATCCAAGGCCCAAGGCGGTAATACCCTGCGCTTT
TTTGACCAAATGATGCAGAAGGCTATCATTGCTCGTGTTGATCTTCAAAATGAGCTACGGCAAGCCATTAAGCAGCAGCA
ATTTCAATTATATTATCAAATACAAGTGGATAGCAACAGTCAGCCTTTAGGTGCCGAAGTCTTAATTAGTTGGCAGCATC
CGGAACGTGGCAGAATTTCCCCACGGCACTTTATTCCTTTGGCGGAAGACATAGGGTTGATTCTGCCAATTGGGCAATGG
GTGCTGGAAACAGTTTGTGCGCAGCTTAAAACATGGCAGGAAGATCCTCTCACTGAGGATCTCGTGCTTGCCGTCAATGT
GAGTGCCAAGCAATTACATCAAGTTGACTTTGTGGAGCAAGTGATCGCCACTCTGCAACGCCATAGCACTAATCCGGCAC
GACTCAAACTAGAGCTAACAGAAAGCATACTGCTTAATAACATTACTGATATTATTGCCAAAATGAAAGCGCTCAACAAG
ATAGGCATTCGTTTCTCATTAGATGACTTTGGTACCGGCTATTCATCTTTGCAATATCTGAAAATGCTGCCGCTAGATGA
ATTGAAAATAGACCAGTCATTTGTACGTAATATTGCCACCGACAGCAGTGACAGAGCGATAGTGCACACCATTATTACGA
TTGCCTCCAGCCTGGATATGAACGTTATCGCTGAGGGTGTAGAGACCAATGCGCAACGTCTGTTTCTGCAGAAAAAAGGC
TGCTTACGTTATCAAGGTTATTTATTTAGCAAACCAGTGCCGATTAAAGAACTTGAGGCTATTTTGAAAAGGCTGAACAC
AATACCCTTACCGGATAAAAAATAA

Upstream 100 bases:

>100_bases
CCAGCATTGATTTTTCAATCATGGCCAGCAGCAGTCACCGAGCAGTTAATAAAACATTAAATTTAAAGGCTGCAAAGCCG
GTATCACCGAGGCACTCCCC

Downstream 100 bases:

>100_bases
AAGTGCGGTTTAGCGCTTACCTTTTGGCTCTACTTACCTTTTGACTATAGAGTAAGGCTTAGCAGCCTATTGATTAAAAA
TAGAAAAATTAAATCCGGCA

Product: diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 674; Mature: 673

Protein sequence:

>674_residues
MTEAVNEKEKLIQKRKKEKLADELIIANLAGELVIAASKLASANKELTFQNNEKEKRTAELAIANKELTFQNNEKEKRAA
ELAIANKELTFQNNEKEKRTVELAIANKELSIAAIVFESQEGMMVTDASKIILRVNHAFTHITGYSSDDAVGQTPSLLKS
GMHNKAFYATMWKKINSTGLWEGEILTRRKNGEIYPEYLRITAVKNAQGIVTNYVATRTDITASKAASNEIEKLAFYDPL
TQLPNRRLFIDRLNQALALSTHSRQRGALLFLDLDQFKTLNDTLGHDIGDLLLKKVTERLSASLRESDTVARFGGDEFVV
LLENLSTYSIEAAAQTRDIATKISLSLNQPYQLLDHVYHNTPSIGATLFIGHQLTAEELLKQADIAMYQSKAQGGNTLRF
FDQMMQKAIIARVDLQNELRQAIKQQQFQLYYQIQVDSNSQPLGAEVLISWQHPERGRISPRHFIPLAEDIGLILPIGQW
VLETVCAQLKTWQEDPLTEDLVLAVNVSAKQLHQVDFVEQVIATLQRHSTNPARLKLELTESILLNNITDIIAKMKALNK
IGIRFSLDDFGTGYSSLQYLKMLPLDELKIDQSFVRNIATDSSDRAIVHTIITIASSLDMNVIAEGVETNAQRLFLQKKG
CLRYQGYLFSKPVPIKELEAILKRLNTIPLPDKK

Sequences:

>Translated_674_residues
MTEAVNEKEKLIQKRKKEKLADELIIANLAGELVIAASKLASANKELTFQNNEKEKRTAELAIANKELTFQNNEKEKRAA
ELAIANKELTFQNNEKEKRTVELAIANKELSIAAIVFESQEGMMVTDASKIILRVNHAFTHITGYSSDDAVGQTPSLLKS
GMHNKAFYATMWKKINSTGLWEGEILTRRKNGEIYPEYLRITAVKNAQGIVTNYVATRTDITASKAASNEIEKLAFYDPL
TQLPNRRLFIDRLNQALALSTHSRQRGALLFLDLDQFKTLNDTLGHDIGDLLLKKVTERLSASLRESDTVARFGGDEFVV
LLENLSTYSIEAAAQTRDIATKISLSLNQPYQLLDHVYHNTPSIGATLFIGHQLTAEELLKQADIAMYQSKAQGGNTLRF
FDQMMQKAIIARVDLQNELRQAIKQQQFQLYYQIQVDSNSQPLGAEVLISWQHPERGRISPRHFIPLAEDIGLILPIGQW
VLETVCAQLKTWQEDPLTEDLVLAVNVSAKQLHQVDFVEQVIATLQRHSTNPARLKLELTESILLNNITDIIAKMKALNK
IGIRFSLDDFGTGYSSLQYLKMLPLDELKIDQSFVRNIATDSSDRAIVHTIITIASSLDMNVIAEGVETNAQRLFLQKKG
CLRYQGYLFSKPVPIKELEAILKRLNTIPLPDKK
>Mature_673_residues
TEAVNEKEKLIQKRKKEKLADELIIANLAGELVIAASKLASANKELTFQNNEKEKRTAELAIANKELTFQNNEKEKRAAE
LAIANKELTFQNNEKEKRTVELAIANKELSIAAIVFESQEGMMVTDASKIILRVNHAFTHITGYSSDDAVGQTPSLLKSG
MHNKAFYATMWKKINSTGLWEGEILTRRKNGEIYPEYLRITAVKNAQGIVTNYVATRTDITASKAASNEIEKLAFYDPLT
QLPNRRLFIDRLNQALALSTHSRQRGALLFLDLDQFKTLNDTLGHDIGDLLLKKVTERLSASLRESDTVARFGGDEFVVL
LENLSTYSIEAAAQTRDIATKISLSLNQPYQLLDHVYHNTPSIGATLFIGHQLTAEELLKQADIAMYQSKAQGGNTLRFF
DQMMQKAIIARVDLQNELRQAIKQQQFQLYYQIQVDSNSQPLGAEVLISWQHPERGRISPRHFIPLAEDIGLILPIGQWV
LETVCAQLKTWQEDPLTEDLVLAVNVSAKQLHQVDFVEQVIATLQRHSTNPARLKLELTESILLNNITDIIAKMKALNKI
GIRFSLDDFGTGYSSLQYLKMLPLDELKIDQSFVRNIATDSSDRAIVHTIITIASSLDMNVIAEGVETNAQRLFLQKKGC
LRYQGYLFSKPVPIKELEAILKRLNTIPLPDKK

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=560, Percent_Identity=32.3214285714286, Blast_Score=277, Evalue=1e-75,
Organism=Escherichia coli, GI87081921, Length=524, Percent_Identity=30.7251908396947, Blast_Score=230, Evalue=2e-61,
Organism=Escherichia coli, GI226510982, Length=427, Percent_Identity=34.192037470726, Blast_Score=214, Evalue=1e-56,
Organism=Escherichia coli, GI87081845, Length=245, Percent_Identity=35.9183673469388, Blast_Score=143, Evalue=3e-35,
Organism=Escherichia coli, GI1787055, Length=428, Percent_Identity=27.5700934579439, Blast_Score=142, Evalue=5e-35,
Organism=Escherichia coli, GI1788502, Length=266, Percent_Identity=33.4586466165414, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI1786507, Length=289, Percent_Identity=31.1418685121107, Blast_Score=139, Evalue=4e-34,
Organism=Escherichia coli, GI1790496, Length=243, Percent_Identity=35.8024691358025, Blast_Score=138, Evalue=1e-33,
Organism=Escherichia coli, GI87081980, Length=253, Percent_Identity=31.2252964426877, Blast_Score=135, Evalue=1e-32,
Organism=Escherichia coli, GI1788849, Length=481, Percent_Identity=27.6507276507277, Blast_Score=133, Evalue=4e-32,
Organism=Escherichia coli, GI1788381, Length=539, Percent_Identity=24.860853432282, Blast_Score=116, Evalue=4e-27,
Organism=Escherichia coli, GI87082096, Length=427, Percent_Identity=27.8688524590164, Blast_Score=115, Evalue=7e-27,
Organism=Escherichia coli, GI87081743, Length=243, Percent_Identity=32.0987654320988, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI87081977, Length=184, Percent_Identity=31.5217391304348, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1788956, Length=176, Percent_Identity=35.7954545454545, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI145693134, Length=167, Percent_Identity=33.5329341317365, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI1787262, Length=168, Percent_Identity=33.9285714285714, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1786584, Length=184, Percent_Identity=30.9782608695652, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI87081881, Length=182, Percent_Identity=34.0659340659341, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1787410, Length=176, Percent_Identity=27.8409090909091, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1789650, Length=428, Percent_Identity=22.4299065420561, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787816, Length=187, Percent_Identity=31.0160427807487, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87082007, Length=192, Percent_Identity=29.6875, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1788085, Length=169, Percent_Identity=28.4023668639053, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI87081974, Length=85, Percent_Identity=37.6470588235294, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1787802, Length=196, Percent_Identity=27.5510204081633, Blast_Score=63, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 75855; Mature: 75724

Theoretical pI: Translated: 7.47; Mature: 7.47

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEAVNEKEKLIQKRKKEKLADELIIANLAGELVIAASKLASANKELTFQNNEKEKRTAE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEHHHHHCCCCCEEECCCCHHHHHHH
LAIANKELTFQNNEKEKRAAELAIANKELTFQNNEKEKRTVELAIANKELSIAAIVFESQ
EEEECCEEEECCCCHHHHHHHHHEECCEEEECCCCCCCEEEEEEEECCCEEEEEEEEECC
EGMMVTDASKIILRVNHAFTHITGYSSDDAVGQTPSLLKSGMHNKAFYATMWKKINSTGL
CCEEEECCCEEEEEEECCEEEEECCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCC
WEGEILTRRKNGEIYPEYLRITAVKNAQGIVTNYVATRTDITASKAASNEIEKLAFYDPL
CCCCEEEECCCCCCCCEEEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCH
TQLPNRRLFIDRLNQALALSTHSRQRGALLFLDLDQFKTLNDTLGHDIGDLLLKKVTERL
HHCCCCEEHHHHHHHHHEECCCCCCCCEEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHH
SASLRESDTVARFGGDEFVVLLENLSTYSIEAAAQTRDIATKISLSLNQPYQLLDHVYHN
HHHHHCCCCHHHCCCCEEEEEEECCCCEEEEHHHHHHHHHEEEEEECCCCHHHHHHHHCC
TPSIGATLFIGHQLTAEELLKQADIAMYQSKAQGGNTLRFFDQMMQKAIIARVDLQNELR
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHH
QAIKQQQFQLYYQIQVDSNSQPLGAEVLISWQHPERGRISPRHFIPLAEDIGLILPIGQW
HHHHHHHEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHCCCCHHHCCEEEEHHHH
VLETVCAQLKTWQEDPLTEDLVLAVNVSAKQLHQVDFVEQVIATLQRHSTNPARLKLELT
HHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEH
ESILLNNITDIIAKMKALNKIGIRFSLDDFGTGYSSLQYLKMLPLDELKIDQSFVRNIAT
HHHHHHHHHHHHHHHHHHHHHCCEEEEHHCCCCHHHHHHHHCCCCHHHHCCHHHHHHHCC
DSSDRAIVHTIITIASSLDMNVIAEGVETNAQRLFLQKKGCLRYQGYLFSKPVPIKELEA
CCCCCHHHHHHHHHHHCCCHHHHHHCHHCCHHHHHHHHCCCEEECCEEECCCCCHHHHHH
ILKRLNTIPLPDKK
HHHHHCCCCCCCCC
>Mature Secondary Structure 
TEAVNEKEKLIQKRKKEKLADELIIANLAGELVIAASKLASANKELTFQNNEKEKRTAE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEHHHHHCCCCCEEECCCCHHHHHHH
LAIANKELTFQNNEKEKRAAELAIANKELTFQNNEKEKRTVELAIANKELSIAAIVFESQ
EEEECCEEEECCCCHHHHHHHHHEECCEEEECCCCCCCEEEEEEEECCCEEEEEEEEECC
EGMMVTDASKIILRVNHAFTHITGYSSDDAVGQTPSLLKSGMHNKAFYATMWKKINSTGL
CCEEEECCCEEEEEEECCEEEEECCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCC
WEGEILTRRKNGEIYPEYLRITAVKNAQGIVTNYVATRTDITASKAASNEIEKLAFYDPL
CCCCEEEECCCCCCCCEEEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCH
TQLPNRRLFIDRLNQALALSTHSRQRGALLFLDLDQFKTLNDTLGHDIGDLLLKKVTERL
HHCCCCEEHHHHHHHHHEECCCCCCCCEEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHH
SASLRESDTVARFGGDEFVVLLENLSTYSIEAAAQTRDIATKISLSLNQPYQLLDHVYHN
HHHHHCCCCHHHCCCCEEEEEEECCCCEEEEHHHHHHHHHEEEEEECCCCHHHHHHHHCC
TPSIGATLFIGHQLTAEELLKQADIAMYQSKAQGGNTLRFFDQMMQKAIIARVDLQNELR
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHH
QAIKQQQFQLYYQIQVDSNSQPLGAEVLISWQHPERGRISPRHFIPLAEDIGLILPIGQW
HHHHHHHEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHCCCCHHHCCEEEEHHHH
VLETVCAQLKTWQEDPLTEDLVLAVNVSAKQLHQVDFVEQVIATLQRHSTNPARLKLELT
HHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEH
ESILLNNITDIIAKMKALNKIGIRFSLDDFGTGYSSLQYLKMLPLDELKIDQSFVRNIAT
HHHHHHHHHHHHHHHHHHHHHCCEEEEHHCCCCHHHHHHHHCCCCHHHHCCHHHHHHHCC
DSSDRAIVHTIITIASSLDMNVIAEGVETNAQRLFLQKKGCLRYQGYLFSKPVPIKELEA
CCCCCHHHHHHHHHHHCCCHHHHHHCHHCCHHHHHHHHCCCEEECCEEECCCCCHHHHHH
ILKRLNTIPLPDKK
HHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]