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The map label for this gene is ycfH [C]

Identifier: 119944854

GI number: 119944854

Start: 1366200

End: 1366976

Strand: Direct

Name: ycfH [C]

Synonym: Ping_1096

Alternate gene names: 119944854

Gene position: 1366200-1366976 (Clockwise)

Preceding gene: 119944853

Following gene: 119944855

Centisome position: 29.96

GC content: 42.73

Gene sequence:

>777_bases
ATGTTAGTAGATTCGCACTGTCATCTGGATCGTTTAGATTACAAAAATAAGCATAAAGATTTATCTGACGTGGTTAATAA
AGCCAAAGAACAGGGGATAGACCACCTGTTAAGTGTCTGCGTGACCTTAAAAGATTATCCTGCAATGGCTGAATTAATTG
CGCCATTTCAGGAGATATTCAGCTCCTGTGGTGTGCATCCGCTTTATCAGGATGAAGTGCTTAATGAGGACCTTTTACTT
GAATATGCACGACAGGAAAAAGTCGTTGCGATAGGTGAGATGGGCCTGGATTTTTTCTATTCGCCAGAAAATAAAGCCGA
GCAGGAAGCTTCTTTTAGAAGCCAGATTCGCGTGGCAAAAATAGTTAACAAACCGATAATAGTGCATACCCGTGATGCGC
GTGAAGCGACCTTAGAAATTTTGCGTAGCGAGGGCGCTGAGCAGGTTGGCGGTGTTCTGCATTGTTTTACGGAATCCCTA
GAAATGGCCCAAGCGGCAATGGAGATGGGCTTTTATATTTCTGTTTCAGGGATTGTTACCTTTAAAAATGCAAAGGAGTT
ACAAGCTGTGATTAAAGAAATTCCATTGGAGCGATTATTAGTTGAAACTGATTCCCCCTATTTAGCGCCTGTTCCGCATC
GGGGGCAGGAAAATGAGCCTGCTTATACGCGCGATGTTGCTAAATTTGTTGCAGCCTTAAAAGGGGTCACATTAGAAGAG
TTGGCTGCAGTGACAACGGCTAACTTTTTTAGGTTATTTGCGCATGCGAAAAAATAA

Upstream 100 bases:

>100_bases
TCGCGTGAAATTGATAGTGAATAAGCAGGTACTTTGAGTTTAACGCCAGCGTAAATAGGCGTTAACAACTTTTGCAGAAT
AGGTAAGTTAAGGAATTAAA

Downstream 100 bases:

>100_bases
AGCCCTGCTTATTAATAAAGTGCTATAACATTGGCTTGATAAACAATAACTTGATAAACAACGGCTTGATAAGTAAATCG
TGTTATGTCACCAAGCCGTC

Product: deoxyribonuclease of TatD family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MLVDSHCHLDRLDYKNKHKDLSDVVNKAKEQGIDHLLSVCVTLKDYPAMAELIAPFQEIFSSCGVHPLYQDEVLNEDLLL
EYARQEKVVAIGEMGLDFFYSPENKAEQEASFRSQIRVAKIVNKPIIVHTRDAREATLEILRSEGAEQVGGVLHCFTESL
EMAQAAMEMGFYISVSGIVTFKNAKELQAVIKEIPLERLLVETDSPYLAPVPHRGQENEPAYTRDVAKFVAALKGVTLEE
LAAVTTANFFRLFAHAKK

Sequences:

>Translated_258_residues
MLVDSHCHLDRLDYKNKHKDLSDVVNKAKEQGIDHLLSVCVTLKDYPAMAELIAPFQEIFSSCGVHPLYQDEVLNEDLLL
EYARQEKVVAIGEMGLDFFYSPENKAEQEASFRSQIRVAKIVNKPIIVHTRDAREATLEILRSEGAEQVGGVLHCFTESL
EMAQAAMEMGFYISVSGIVTFKNAKELQAVIKEIPLERLLVETDSPYLAPVPHRGQENEPAYTRDVAKFVAALKGVTLEE
LAAVTTANFFRLFAHAKK
>Mature_258_residues
MLVDSHCHLDRLDYKNKHKDLSDVVNKAKEQGIDHLLSVCVTLKDYPAMAELIAPFQEIFSSCGVHPLYQDEVLNEDLLL
EYARQEKVVAIGEMGLDFFYSPENKAEQEASFRSQIRVAKIVNKPIIVHTRDAREATLEILRSEGAEQVGGVLHCFTESL
EMAQAAMEMGFYISVSGIVTFKNAKELQAVIKEIPLERLLVETDSPYLAPVPHRGQENEPAYTRDVAKFVAALKGVTLEE
LAAVTTANFFRLFAHAKK

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=270, Percent_Identity=33.7037037037037, Blast_Score=124, Evalue=9e-29,
Organism=Homo sapiens, GI110349734, Length=270, Percent_Identity=33.3333333333333, Blast_Score=122, Evalue=4e-28,
Organism=Homo sapiens, GI226061853, Length=276, Percent_Identity=33.695652173913, Blast_Score=120, Evalue=1e-27,
Organism=Homo sapiens, GI226061614, Length=259, Percent_Identity=32.8185328185328, Blast_Score=112, Evalue=2e-25,
Organism=Homo sapiens, GI225903424, Length=269, Percent_Identity=29.7397769516729, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI226061595, Length=233, Percent_Identity=33.4763948497854, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI14042943, Length=275, Percent_Identity=28.7272727272727, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI225903439, Length=232, Percent_Identity=28.8793103448276, Blast_Score=84, Evalue=9e-17,
Organism=Escherichia coli, GI1787342, Length=253, Percent_Identity=55.3359683794466, Blast_Score=291, Evalue=4e-80,
Organism=Escherichia coli, GI48994985, Length=248, Percent_Identity=37.9032258064516, Blast_Score=146, Evalue=1e-36,
Organism=Escherichia coli, GI87082439, Length=258, Percent_Identity=27.1317829457364, Blast_Score=111, Evalue=6e-26,
Organism=Caenorhabditis elegans, GI17559024, Length=286, Percent_Identity=30.4195804195804, Blast_Score=117, Evalue=8e-27,
Organism=Caenorhabditis elegans, GI71980746, Length=276, Percent_Identity=30.4347826086957, Blast_Score=110, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI17565396, Length=299, Percent_Identity=26.0869565217391, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17543026, Length=226, Percent_Identity=26.5486725663717, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24586117, Length=281, Percent_Identity=29.5373665480427, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI221330018, Length=281, Percent_Identity=29.5373665480427, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24648690, Length=276, Percent_Identity=27.8985507246377, Blast_Score=89, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 28936; Mature: 28936

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: PS01137 TATD_1 ; PS01090 TATD_2 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVDSHCHLDRLDYKNKHKDLSDVVNKAKEQGIDHLLSVCVTLKDYPAMAELIAPFQEIF
CCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
SSCGVHPLYQDEVLNEDLLLEYARQEKVVAIGEMGLDFFYSPENKAEQEASFRSQIRVAK
HHCCCCCCHHHHHCCHHHHHHHHHHCCEEEEHHHCCCEEECCCCHHHHHHHHHHHHHHHH
IVNKPIIVHTRDAREATLEILRSEGAEQVGGVLHCFTESLEMAQAAMEMGFYISVSGIVT
HHCCCEEEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEE
FKNAKELQAVIKEIPLERLLVETDSPYLAPVPHRGQENEPAYTRDVAKFVAALKGVTLEE
ECCHHHHHHHHHHCCHHHHHEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHH
LAAVTTANFFRLFAHAKK
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLVDSHCHLDRLDYKNKHKDLSDVVNKAKEQGIDHLLSVCVTLKDYPAMAELIAPFQEIF
CCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
SSCGVHPLYQDEVLNEDLLLEYARQEKVVAIGEMGLDFFYSPENKAEQEASFRSQIRVAK
HHCCCCCCHHHHHCCHHHHHHHHHHCCEEEEHHHCCCEEECCCCHHHHHHHHHHHHHHHH
IVNKPIIVHTRDAREATLEILRSEGAEQVGGVLHCFTESLEMAQAAMEMGFYISVSGIVT
HHCCCEEEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEE
FKNAKELQAVIKEIPLERLLVETDSPYLAPVPHRGQENEPAYTRDVAKFVAALKGVTLEE
ECCHHHHHHHHHHCCHHHHHEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHH
LAAVTTANFFRLFAHAKK
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]