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The map label for this gene is chrR [H]

Identifier: 119944754

GI number: 119944754

Start: 1253286

End: 1253936

Strand: Direct

Name: chrR [H]

Synonym: Ping_0996

Alternate gene names: 119944754

Gene position: 1253286-1253936 (Clockwise)

Preceding gene: 119944753

Following gene: 119944755

Centisome position: 27.49

GC content: 40.86

Gene sequence:

>651_bases
TTGATTAAACATCATCCAACATCCGCATTATTAGCCAGCCATAGCGCTGCACAACTCCCTCTGTCTTTATCAATTGCGGT
GAGTGCCCATCTTGAAATGTGCCCTAAATGCGTCACTGTTACCAGACAAATAACGGAACAACAATCAGATCTTTTTGAAG
CACAGGATGTCACAAAGAATATCAATTTTTCTAATATATTAGATAAAATTTTTGAGCATCAACCCGAGCGGCAGGTAGAG
CCTAAAAAAGTAGTGATGAATAGCATTTCTGTTGCCGGGACTGAGTACCAATTACCGCGTGCATTTACCCATTTTACGGA
TCTTAAATGGTCTTCTTTTGGTGCAATAAGCCGTGCGCGCGTGGTTAAGGATACAGATAATATTCGTGCTAGTTTATTAC
ATATCGACAAAAATAGCATTATTCCCAGCCATACCCATAAAGGTTATGAGCTTACGCTATTATTAGAGGGGGCTTTTAGC
GACGAAAGTGGTGTTTATAACAAAGGTGATTTCATCTGGCTGAATAACGACCTTGAACATACCCCCTTTACTAAAGAGGG
GTGTCTTTGTTATGCGGTTCAAGATGCGCCACTGCGTTTTGTCTCGGGTATCAGCCAGGCACTTAATCCGCTTGGTCAAT
TAATTTATTAA

Upstream 100 bases:

>100_bases
CAACAGGAATTAGCCACTCATCTTGATCTCCCCTTAGGTACGGTTAAATCCCGGCTTAGATTGGCGATATCAAAATTAAA
ATCAAAATTGGAGGCAGATC

Downstream 100 bases:

>100_bases
AGATAAATAGGCCTCAATAACCTATATTTTAAATAAAAAAGGTAAAAATATGGTTGAGTTTTCAGATGAAAAAATTCAAG
TTGGCATAAGCAGTTGCTTA

Product: anti-ECFsigma factor, ChrR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MIKHHPTSALLASHSAAQLPLSLSIAVSAHLEMCPKCVTVTRQITEQQSDLFEAQDVTKNINFSNILDKIFEHQPERQVE
PKKVVMNSISVAGTEYQLPRAFTHFTDLKWSSFGAISRARVVKDTDNIRASLLHIDKNSIIPSHTHKGYELTLLLEGAFS
DESGVYNKGDFIWLNNDLEHTPFTKEGCLCYAVQDAPLRFVSGISQALNPLGQLIY

Sequences:

>Translated_216_residues
MIKHHPTSALLASHSAAQLPLSLSIAVSAHLEMCPKCVTVTRQITEQQSDLFEAQDVTKNINFSNILDKIFEHQPERQVE
PKKVVMNSISVAGTEYQLPRAFTHFTDLKWSSFGAISRARVVKDTDNIRASLLHIDKNSIIPSHTHKGYELTLLLEGAFS
DESGVYNKGDFIWLNNDLEHTPFTKEGCLCYAVQDAPLRFVSGISQALNPLGQLIY
>Mature_216_residues
MIKHHPTSALLASHSAAQLPLSLSIAVSAHLEMCPKCVTVTRQITEQQSDLFEAQDVTKNINFSNILDKIFEHQPERQVE
PKKVVMNSISVAGTEYQLPRAFTHFTDLKWSSFGAISRARVVKDTDNIRASLLHIDKNSIIPSHTHKGYELTLLLEGAFS
DESGVYNKGDFIWLNNDLEHTPFTKEGCLCYAVQDAPLRFVSGISQALNPLGQLIY

Specific function: Anti-sigma factor that inhibits the activity of the extracytoplasmic function (ECF) sigma (E) factor, thereby indirectly regulating the transcription of the cycA and rpoE genes [H]

COG id: COG3806

COG function: function code T; Anti-sigma factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012807
- InterPro:   IPR011051
- InterPro:   IPR014710 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24120; Mature: 24120

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKHHPTSALLASHSAAQLPLSLSIAVSAHLEMCPKCVTVTRQITEQQSDLFEAQDVTKN
CCCCCCCHHHHHCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
INFSNILDKIFEHQPERQVEPKKVVMNSISVAGTEYQLPRAFTHFTDLKWSSFGAISRAR
CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEECCHHHHHHHCCCCCCCCCHHHHH
VVKDTDNIRASLLHIDKNSIIPSHTHKGYELTLLLEGAFSDESGVYNKGDFIWLNNDLEH
EECCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEECCCCCC
TPFTKEGCLCYAVQDAPLRFVSGISQALNPLGQLIY
CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIKHHPTSALLASHSAAQLPLSLSIAVSAHLEMCPKCVTVTRQITEQQSDLFEAQDVTKN
CCCCCCCHHHHHCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
INFSNILDKIFEHQPERQVEPKKVVMNSISVAGTEYQLPRAFTHFTDLKWSSFGAISRAR
CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEECCHHHHHHHCCCCCCCCCHHHHH
VVKDTDNIRASLLHIDKNSIIPSHTHKGYELTLLLEGAFSDESGVYNKGDFIWLNNDLEH
EECCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEECCCCCC
TPFTKEGCLCYAVQDAPLRFVSGISQALNPLGQLIY
CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7721683 [H]