Click here to switch to the map view.

The map label for this gene is 119944753

Identifier: 119944753

GI number: 119944753

Start: 1252673

End: 1253293

Strand: Direct

Name: 119944753

Synonym: Ping_0995

Alternate gene names: NA

Gene position: 1252673-1253293 (Clockwise)

Preceding gene: 119944752

Following gene: 119944754

Centisome position: 27.47

GC content: 37.52

Gene sequence:

>621_bases
ATGATAGCCAGAATAGCTCATAACTCGACGGACATTACATTGAATAATACAAAACTTAATTCACTAGATAGTGAACAATT
AAAAATAAATTTGTGGTTAAAATTGGTTGCAACCAAGCAGGATAAAGAAGCCTTTTCTGAGCTGTTCAAATGGTTTGCAC
CGAGAATTCGTGCGCACGGTATGCAGCGTTTTAAACAAGAAGCACTGGCAATGGATTTGGTACAAGAGACGATGTTATTA
GTGTGGCGAAAAGCCGTTTTGTTTAATGTGGATAAAGGTAAAGCCAGCACTTGGATTTACACCATAATGCGTAATTACTG
TTTCGATATGCTGCGTAAAAAACAAACTCAGAAAGAAGATACGATCAGTGATGATCTTTGGCCGGTTATTGAGCAGCAAG
TACCGGATGATAAAGATGATCATTTACAGAATCGCTTATTATTAAGCCATCTGGGAAGTTTACCCTTAGAGCAAAAACAA
GTCGTTGAAGCTATTTATTTGCAAGAAATGACTCAACAGGAATTAGCCACTCATCTTGATCTCCCCTTAGGTACGGTTAA
ATCCCGGCTTAGATTGGCGATATCAAAATTAAAATCAAAATTGGAGGCAGATCTTGATTAA

Upstream 100 bases:

>100_bases
ATAAAAATTATTATTTAATGATCTAATCTCAAATTTTGACCGTATAGAGTGTCTCATACAGATAAGTTGTTCTTATAATG
TTGGAAGGGTAATATAAACT

Downstream 100 bases:

>100_bases
ACATCATCCAACATCCGCATTATTAGCCAGCCATAGCGCTGCACAACTCCCTCTGTCTTTATCAATTGCGGTGAGTGCCC
ATCTTGAAATGTGCCCTAAA

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor RpoE; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Subfamily RNA Polymerase Sigma Factor; Sigma-; RNA Polymerase Sigma Factor SigL; DNA-Directed RNA Polymerase Sigma Subunit; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma-24 Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma Factor SigK; RNA Polymerase ECF-Type Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma-70 Factor Ecf Subfamily; RNA Polymerase Sigma-E Factor Protein; RNA Polymerase Sigma Subunit Protein; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma-70 Factor ECF Family Protein; RNA Polymerase ECF-Type Sigma Factor Family Protein; ECF Sigma Factor; ECF RNA Polymerase Sigma-70 Family; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase Sigma Factor Sigma-24-Like Protein; Sigma-70 Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MIARIAHNSTDITLNNTKLNSLDSEQLKINLWLKLVATKQDKEAFSELFKWFAPRIRAHGMQRFKQEALAMDLVQETMLL
VWRKAVLFNVDKGKASTWIYTIMRNYCFDMLRKKQTQKEDTISDDLWPVIEQQVPDDKDDHLQNRLLLSHLGSLPLEQKQ
VVEAIYLQEMTQQELATHLDLPLGTVKSRLRLAISKLKSKLEADLD

Sequences:

>Translated_206_residues
MIARIAHNSTDITLNNTKLNSLDSEQLKINLWLKLVATKQDKEAFSELFKWFAPRIRAHGMQRFKQEALAMDLVQETMLL
VWRKAVLFNVDKGKASTWIYTIMRNYCFDMLRKKQTQKEDTISDDLWPVIEQQVPDDKDDHLQNRLLLSHLGSLPLEQKQ
VVEAIYLQEMTQQELATHLDLPLGTVKSRLRLAISKLKSKLEADLD
>Mature_206_residues
MIARIAHNSTDITLNNTKLNSLDSEQLKINLWLKLVATKQDKEAFSELFKWFAPRIRAHGMQRFKQEALAMDLVQETMLL
VWRKAVLFNVDKGKASTWIYTIMRNYCFDMLRKKQTQKEDTISDDLWPVIEQQVPDDKDDHLQNRLLLSHLGSLPLEQKQ
VVEAIYLQEMTQQELATHLDLPLGTVKSRLRLAISKLKSKLEADLD

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23989; Mature: 23989

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIARIAHNSTDITLNNTKLNSLDSEQLKINLWLKLVATKQDKEAFSELFKWFAPRIRAHG
CCEEEECCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
MQRFKQEALAMDLVQETMLLVWRKAVLFNVDKGKASTWIYTIMRNYCFDMLRKKQTQKED
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
TISDDLWPVIEQQVPDDKDDHLQNRLLLSHLGSLPLEQKQVVEAIYLQEMTQQELATHLD
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
LPLGTVKSRLRLAISKLKSKLEADLD
CCHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIARIAHNSTDITLNNTKLNSLDSEQLKINLWLKLVATKQDKEAFSELFKWFAPRIRAHG
CCEEEECCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
MQRFKQEALAMDLVQETMLLVWRKAVLFNVDKGKASTWIYTIMRNYCFDMLRKKQTQKED
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
TISDDLWPVIEQQVPDDKDDHLQNRLLLSHLGSLPLEQKQVVEAIYLQEMTQQELATHLD
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
LPLGTVKSRLRLAISKLKSKLEADLD
CCHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA