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The map label for this gene is 119944727

Identifier: 119944727

GI number: 119944727

Start: 1215661

End: 1216377

Strand: Direct

Name: 119944727

Synonym: Ping_0968

Alternate gene names: NA

Gene position: 1215661-1216377 (Clockwise)

Preceding gene: 119944726

Following gene: 119944732

Centisome position: 26.66

GC content: 38.21

Gene sequence:

>717_bases
ATGAATAATTTCAATGACCATGAGATTTTAAACTGGGCAGCCTTTCTGCAGTTAAAAGAGCAGCTCAGTAAAGATTCACG
TTTGAAGAATTTTTATAAGACAGGAACCTATCACGCTGAAACGCCATTAAGTGACATTGATTTTGTCGCACTGGATTTTG
AAACGACAGGCTTAGATTCACAGCAAAACGGTATTATTAGCATTGGTCTGGTGCCCTTTAATTTACAGCGTATTTTTTGC
CGAAAAGTAAAAGAATGGTACATCAATCCACAGGATAATTTACAAGAAAACTCGATTATTATTCATGGTATTACCCACTC
GGATTTACAAGATGCACCTGATATTCTGAGGATTTTGGAGCAGCTTTTAGATGAACTGGCCGGAAAAGTGGTGGTGGTGC
ATTATCGTCGTATTGAGCGTGATTTTCTTGATCACACTTTACGCATTTTGATTGATGAAGGTATACTATTTCCAGTTATT
GATACCATGCAGATTGAGGCCAATTTGCAACGGCGTAAATCGCAGGGGTTGTTTAATTTCTTTAACAAAAAACGACCAGA
GTCAATTCGTCTTGCCGATAGTCGTGCTCGTTACAACTTACCCGTTTATCCGCCTCATGATGCCTTAACTGATGCAATTG
CTACTGCGGAATTACTGCAGGCTCAAATTAAATATCATTTTAGTCCTGACACTGCGATTAAAAAATTATGGTTATAA

Upstream 100 bases:

>100_bases
TTTGAAAGGCGTAATCTTAAAGATGCCTTTTTAGTGCTTAGCAATGCGCAAAACTTTTTAAAATATCGTTATAGTGGCAA
TAAATTTTAAAGGTTAAATA

Downstream 100 bases:

>100_bases
AGTCTAAGCTGATTAGCGAAGATTAATAGGTAAAAAAAAAGCCGATGAATAATTCATCGGCTTTTTTTATCGCGAGTAAA
AACTAGCTTTTATTTTTTTC

Product: DNA polymerase III subunit epsilon

Products: diphosphate; DNAn+1

Alternate protein names: Exonuclease RNAse T And DNA Polymerase III; DNA Polymerase III Epsilon Subunit; Exonuclease; DNA Polymerase III Subunit; Exonuclease Superfamily; DNA Polymerase III PolC-Type; 3-5' Exonuclease; DNA Polymerase III; DNA Polymerase Exonuclease Activity; Exonuclase; DNA Polymerase III Epsilon-Subunit Paralog

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MNNFNDHEILNWAAFLQLKEQLSKDSRLKNFYKTGTYHAETPLSDIDFVALDFETTGLDSQQNGIISIGLVPFNLQRIFC
RKVKEWYINPQDNLQENSIIIHGITHSDLQDAPDILRILEQLLDELAGKVVVVHYRRIERDFLDHTLRILIDEGILFPVI
DTMQIEANLQRRKSQGLFNFFNKKRPESIRLADSRARYNLPVYPPHDALTDAIATAELLQAQIKYHFSPDTAIKKLWL

Sequences:

>Translated_238_residues
MNNFNDHEILNWAAFLQLKEQLSKDSRLKNFYKTGTYHAETPLSDIDFVALDFETTGLDSQQNGIISIGLVPFNLQRIFC
RKVKEWYINPQDNLQENSIIIHGITHSDLQDAPDILRILEQLLDELAGKVVVVHYRRIERDFLDHTLRILIDEGILFPVI
DTMQIEANLQRRKSQGLFNFFNKKRPESIRLADSRARYNLPVYPPHDALTDAIATAELLQAQIKYHFSPDTAIKKLWL
>Mature_238_residues
MNNFNDHEILNWAAFLQLKEQLSKDSRLKNFYKTGTYHAETPLSDIDFVALDFETTGLDSQQNGIISIGLVPFNLQRIFC
RKVKEWYINPQDNLQENSIIIHGITHSDLQDAPDILRILEQLLDELAGKVVVVHYRRIERDFLDHTLRILIDEGILFPVI
DTMQIEANLQRRKSQGLFNFFNKKRPESIRLADSRARYNLPVYPPHDALTDAIATAELLQAQIKYHFSPDTAIKKLWL

Specific function: Unknown

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.7.7

Molecular weight: Translated: 27658; Mature: 27658

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNFNDHEILNWAAFLQLKEQLSKDSRLKNFYKTGTYHAETPLSDIDFVALDFETTGLDS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEEEEECCCCC
QQNGIISIGLVPFNLQRIFCRKVKEWYINPQDNLQENSIIIHGITHSDLQDAPDILRILE
CCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHH
QLLDELAGKVVVVHYRRIERDFLDHTLRILIDEGILFPVIDTMQIEANLQRRKSQGLFNF
HHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHCCHHHH
FNKKRPESIRLADSRARYNLPVYPPHDALTDAIATAELLQAQIKYHFSPDTAIKKLWL
HHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCC
>Mature Secondary Structure
MNNFNDHEILNWAAFLQLKEQLSKDSRLKNFYKTGTYHAETPLSDIDFVALDFETTGLDS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEEEEECCCCC
QQNGIISIGLVPFNLQRIFCRKVKEWYINPQDNLQENSIIIHGITHSDLQDAPDILRILE
CCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHH
QLLDELAGKVVVVHYRRIERDFLDHTLRILIDEGILFPVIDTMQIEANLQRRKSQGLFNF
HHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHCCHHHH
FNKKRPESIRLADSRARYNLPVYPPHDALTDAIATAELLQAQIKYHFSPDTAIKKLWL
HHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA