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The map label for this gene is rbfA

Identifier: 119944580

GI number: 119944580

Start: 1023193

End: 1023594

Strand: Direct

Name: rbfA

Synonym: Ping_0818

Alternate gene names: 119944580

Gene position: 1023193-1023594 (Clockwise)

Preceding gene: 119944579

Following gene: 119944581

Centisome position: 22.44

GC content: 45.02

Gene sequence:

>402_bases
ATGGCAAAAGAATACAGCCGAACTTCCCGAGTATCTCAGCAGGTTCAAAAAGAACTTGCGCGTATATTACAGCAGGAAGT
GAAAGATCCGCGCATTGGAATGGTCACTATCTCTGGCGTAGATGTCACGCGAGATCTTGCTTACGCAAAAGTATTTGTGA
CCTTTTTAACCGTTGGTGACCAAACCAATGATGAGTCTCTTGAGGGATTGAACGCGGCAGCGGGATATATTCGCCGTCTG
TTAGGTAAAGCGATGCGTTTACGTATTGTACCTGAAGTACGCTTCTGTTTTGACAGTACGTTAACCGAAGGTTTACGTAT
TTCAGAATTAGTGAGCGGAGCAGTAAAAGCTGATAAGACTAAATTAGCTGCGTCAGGCAGAACGGAAGAGGACGAGGACT
AA

Upstream 100 bases:

>100_bases
TTATAATCTCAAAGTGGCCTTAACGTAAAGAATGGAGGCCTTAGGCCTCCATTCTTATTTCTAACGAATAATCATCAGTG
TGCTGATGAAGGAGTAAAAA

Downstream 100 bases:

>100_bases
TGGCAAGACGGGGAAAGGGGCGTTCAATAAACGGTATCATTTTACTGGATAAACCCACAGACATCAGCTCAAACCATGCA
TTACAACGTGTTAAGCGTAT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 132

Protein sequence:

>133_residues
MAKEYSRTSRVSQQVQKELARILQQEVKDPRIGMVTISGVDVTRDLAYAKVFVTFLTVGDQTNDESLEGLNAAAGYIRRL
LGKAMRLRIVPEVRFCFDSTLTEGLRISELVSGAVKADKTKLAASGRTEEDED

Sequences:

>Translated_133_residues
MAKEYSRTSRVSQQVQKELARILQQEVKDPRIGMVTISGVDVTRDLAYAKVFVTFLTVGDQTNDESLEGLNAAAGYIRRL
LGKAMRLRIVPEVRFCFDSTLTEGLRISELVSGAVKADKTKLAASGRTEEDED
>Mature_132_residues
AKEYSRTSRVSQQVQKELARILQQEVKDPRIGMVTISGVDVTRDLAYAKVFVTFLTVGDQTNDESLEGLNAAAGYIRRLL
GKAMRLRIVPEVRFCFDSTLTEGLRISELVSGAVKADKTKLAASGRTEEDED

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=133, Percent_Identity=53.3834586466165, Blast_Score=144, Evalue=2e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_PSYIN (A1ST46)

Other databases:

- EMBL:   CP000510
- RefSeq:   YP_942260.1
- ProteinModelPortal:   A1ST46
- SMR:   A1ST46
- STRING:   A1ST46
- GeneID:   4625459
- GenomeReviews:   CP000510_GR
- KEGG:   pin:Ping_0818
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   GHAKIFM
- PhylomeDB:   A1ST46
- BioCyc:   PING357804:PING_0818-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 14740; Mature: 14609

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKEYSRTSRVSQQVQKELARILQQEVKDPRIGMVTISGVDVTRDLAYAKVFVTFLTVGD
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCC
QTNDESLEGLNAAAGYIRRLLGKAMRLRIVPEVRFCFDSTLTEGLRISELVSGAVKADKT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
KLAASGRTEEDED
HHHCCCCCCCCCC
>Mature Secondary Structure 
AKEYSRTSRVSQQVQKELARILQQEVKDPRIGMVTISGVDVTRDLAYAKVFVTFLTVGD
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCC
QTNDESLEGLNAAAGYIRRLLGKAMRLRIVPEVRFCFDSTLTEGLRISELVSGAVKADKT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
KLAASGRTEEDED
HHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA