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The map label for this gene is rbpB [H]

Identifier: 119944565

GI number: 119944565

Start: 1004183

End: 1004452

Strand: Reverse

Name: rbpB [H]

Synonym: Ping_0802

Alternate gene names: 119944565

Gene position: 1004452-1004183 (Counterclockwise)

Preceding gene: 119944566

Following gene: 119944557

Centisome position: 22.03

GC content: 35.93

Gene sequence:

>270_bases
ATGAAAATATTAGTACGTAACCTTGCTGCGGCAACCACTGAAGAAAAATTAAACAGCTTATTTATAGAATATGGCACCGT
GCAGTCTTGCAGCTTAGTACTTGATAAAGTAACAGGAAAATCCAAGGGTTTTGGTTTTGTAGAAATGCCAAAAGTTGGCG
AAGCAAAAGCGGCGATGAAAACATTAAACGGTTATAAATTAGCCGGTAATTTTATTCGAGTAAAAAAAGCAGAATCTAAA
GTCGAAGCGACCGAAGAGATTAAAGAATAA

Upstream 100 bases:

>100_bases
AATCTATTTTTATTCACCCCGGTTAATAACAGGCAGAAATAAAGGCAAATACCTGTTAAAATAATTCACTTAAAATTATT
TAATGCAAAAATGGTGAACC

Downstream 100 bases:

>100_bases
AAATTAAAAGGCGGAAAGGCCAGAGTGCTTTAAGGCGAGAAGGCTAAAAATTTAAAGCTCTAAGGCGTGAAGGCTAGAAG
GCGCGAAAGTGCGAAGGCGG

Product: RNP-1 like RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 89; Mature: 89

Protein sequence:

>89_residues
MKILVRNLAAATTEEKLNSLFIEYGTVQSCSLVLDKVTGKSKGFGFVEMPKVGEAKAAMKTLNGYKLAGNFIRVKKAESK
VEATEEIKE

Sequences:

>Translated_89_residues
MKILVRNLAAATTEEKLNSLFIEYGTVQSCSLVLDKVTGKSKGFGFVEMPKVGEAKAAMKTLNGYKLAGNFIRVKKAESK
VEATEEIKE
>Mature_89_residues
MKILVRNLAAATTEEKLNSLFIEYGTVQSCSLVLDKVTGKSKGFGFVEMPKVGEAKAAMKTLNGYKLAGNFIRVKKAESK
VEATEEIKE

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI14149675, Length=86, Percent_Identity=41.8604651162791, Blast_Score=65, Evalue=8e-12,
Organism=Homo sapiens, GI4557493, Length=86, Percent_Identity=41.8604651162791, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17553656, Length=83, Percent_Identity=37.3493975903614, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI17137710, Length=75, Percent_Identity=45.3333333333333, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI221330652, Length=82, Percent_Identity=37.8048780487805, Blast_Score=64, Evalue=1e-11,
Organism=Drosophila melanogaster, GI62471589, Length=82, Percent_Identity=37.8048780487805, Blast_Score=64, Evalue=1e-11,
Organism=Drosophila melanogaster, GI19549692, Length=82, Percent_Identity=37.8048780487805, Blast_Score=64, Evalue=1e-11,
Organism=Drosophila melanogaster, GI19549690, Length=82, Percent_Identity=37.8048780487805, Blast_Score=64, Evalue=1e-11,
Organism=Drosophila melanogaster, GI221330653, Length=83, Percent_Identity=37.3493975903614, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI19549688, Length=83, Percent_Identity=37.3493975903614, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI19549694, Length=83, Percent_Identity=37.3493975903614, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24582417, Length=82, Percent_Identity=32.9268292682927, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI45550943, Length=82, Percent_Identity=32.9268292682927, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24582419, Length=82, Percent_Identity=32.9268292682927, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24582423, Length=82, Percent_Identity=32.9268292682927, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24582421, Length=82, Percent_Identity=32.9268292682927, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI19920866, Length=82, Percent_Identity=32.9268292682927, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24582412, Length=82, Percent_Identity=32.9268292682927, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI161077787, Length=82, Percent_Identity=42.6829268292683, Blast_Score=62, Evalue=7e-11,
Organism=Drosophila melanogaster, GI18860091, Length=82, Percent_Identity=42.6829268292683, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 9729; Mature: 9729

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILVRNLAAATTEEKLNSLFIEYGTVQSCSLVLDKVTGKSKGFGFVEMPKVGEAKAAMK
CEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHH
TLNGYKLAGNFIRVKKAESKVEATEEIKE
HCCCEEECCCEEEEECCCHHHHHHHHHCC
>Mature Secondary Structure
MKILVRNLAAATTEEKLNSLFIEYGTVQSCSLVLDKVTGKSKGFGFVEMPKVGEAKAAMK
CEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHH
TLNGYKLAGNFIRVKKAESKVEATEEIKE
HCCCEEECCCEEEEECCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]