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The map label for this gene is ybfL [H]

Identifier: 119944556

GI number: 119944556

Start: 993740

End: 994864

Strand: Direct

Name: ybfL [H]

Synonym: Ping_0793

Alternate gene names: 119944556

Gene position: 993740-994864 (Clockwise)

Preceding gene: 119944555

Following gene: 119944558

Centisome position: 21.79

GC content: 37.69

Gene sequence:

>1125_bases
ATGTCCCAAATAACCTTGATAAACCAGCTCTCAATCATCCGTGATACCCGACAACCAAGGAAAGTGCATCACAATTTAGT
TGATGTTTTATTTTTGGCAATTACAGCCGTCATATCGGGCTGTGAGGGTTGGGAAGAAATACAAGATTTCGGCAACGATA
AGTTAGATTGGCTGAGAAAGTATTTACCATTTTCAGGCGGAATACCTACGGACGACACAATTTCTCGTATTTTTCAGTTG
ATTGACCCAAAAGAATTTCAAAAGTGCTTTGCTACTTGGATGAAAAGTTGCTGTGAAATGAGTCATGGAGATGTCATTGC
TATTGATGGAAAAACATTAAGAGGTTCATTTAATAAGAAAGATAAATCAGATACTATTCATATGGTTAGTGCTTTTGCAG
CCGCTAATTCGGTTGTGCTAGGGCAAGTTAAGACAAATGCTAAGTCTAATGAAATTACAGCGATTCCTAAGTTATTAGAT
TTATTGGATGTACGTGGATGCCTCGTAACTATTGATGCAATGGGATGCCAAACTAAAATAGCTAAAAAAATCGTAGATAA
AGGTGGTGATTATCTTTTGCCTGTTAAAGGTAACCAAGAACGATTACAAACAGCATTAGACGGTATATTTTCAATTCGCC
GATTAGAGTTACCAGAAACAGAAGCCTATACGACTAAAGAAAAAGGCCATGGTCGAGAAGATAGCAGGATGTGTATGGTT
GCAGATGCTAACGAAATTGGTGACTTAGTTTTTGAATGGCCAGGCTTAAAAACGCTTGGGTATGCTGTCTCGTTTAGAAC
TGAGAAAGATATGCAAACAACTGTAGCAGTTAAGTTTTATATCAGTTCAGCAAAACTAGATGCTAAGTCTCTATTAGAGG
CATCAAGAGCGCATTGGACTGTGGAAAATAACTTGCATTGGCAACTTGATATTTCTATGAATGAAGACTCATGTCGTATT
CGCCAGCAGAATTCAACAGAAAATCTAGCAACTGTGCGACATACAAGCTTGAACTTGTTAAAGAATGAAAAGTCTTTCGA
TGGTGGTATCAAGAGAAAGCATAAACAAGCAAATCGCAGTGATAGTTACCGAGAACTAGTTGTTTCAGGACTTTCGTTGT
TATAA

Upstream 100 bases:

>100_bases
GTTAGCTGTATCTATATATCTGAATTTACAAAAGGATCACGTTGTAGATCAGTTTTGGTTGTGATCATAACCTTCTTTTT
ATCTTAAATAGAAACTAGAT

Downstream 100 bases:

>100_bases
ATGAAGGGTAATTTCAATCTATTTAGATTGATTATGTGAATTAAGTCGTTCGTAATTTCCCCCTGCCTGAAGATACTACT
CCAGCCACCAAACTCTTTGG

Product: transposase, IS4 family protein

Products: NA

Alternate protein names: H repeat-associated protein in rhsC-phrB intergenic region; ORF-H2 [H]

Number of amino acids: Translated: 374; Mature: 373

Protein sequence:

>374_residues
MSQITLINQLSIIRDTRQPRKVHHNLVDVLFLAITAVISGCEGWEEIQDFGNDKLDWLRKYLPFSGGIPTDDTISRIFQL
IDPKEFQKCFATWMKSCCEMSHGDVIAIDGKTLRGSFNKKDKSDTIHMVSAFAAANSVVLGQVKTNAKSNEITAIPKLLD
LLDVRGCLVTIDAMGCQTKIAKKIVDKGGDYLLPVKGNQERLQTALDGIFSIRRLELPETEAYTTKEKGHGREDSRMCMV
ADANEIGDLVFEWPGLKTLGYAVSFRTEKDMQTTVAVKFYISSAKLDAKSLLEASRAHWTVENNLHWQLDISMNEDSCRI
RQQNSTENLATVRHTSLNLLKNEKSFDGGIKRKHKQANRSDSYRELVVSGLSLL

Sequences:

>Translated_374_residues
MSQITLINQLSIIRDTRQPRKVHHNLVDVLFLAITAVISGCEGWEEIQDFGNDKLDWLRKYLPFSGGIPTDDTISRIFQL
IDPKEFQKCFATWMKSCCEMSHGDVIAIDGKTLRGSFNKKDKSDTIHMVSAFAAANSVVLGQVKTNAKSNEITAIPKLLD
LLDVRGCLVTIDAMGCQTKIAKKIVDKGGDYLLPVKGNQERLQTALDGIFSIRRLELPETEAYTTKEKGHGREDSRMCMV
ADANEIGDLVFEWPGLKTLGYAVSFRTEKDMQTTVAVKFYISSAKLDAKSLLEASRAHWTVENNLHWQLDISMNEDSCRI
RQQNSTENLATVRHTSLNLLKNEKSFDGGIKRKHKQANRSDSYRELVVSGLSLL
>Mature_373_residues
SQITLINQLSIIRDTRQPRKVHHNLVDVLFLAITAVISGCEGWEEIQDFGNDKLDWLRKYLPFSGGIPTDDTISRIFQLI
DPKEFQKCFATWMKSCCEMSHGDVIAIDGKTLRGSFNKKDKSDTIHMVSAFAAANSVVLGQVKTNAKSNEITAIPKLLDL
LDVRGCLVTIDAMGCQTKIAKKIVDKGGDYLLPVKGNQERLQTALDGIFSIRRLELPETEAYTTKEKGHGREDSRMCMVA
DANEIGDLVFEWPGLKTLGYAVSFRTEKDMQTTVAVKFYISSAKLDAKSLLEASRAHWTVENNLHWQLDISMNEDSCRIR
QQNSTENLATVRHTSLNLLKNEKSFDGGIKRKHKQANRSDSYRELVVSGLSLL

Specific function: Unknown

COG id: COG5433

COG function: function code L; Transposase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 11 family [H]

Homologues:

Organism=Escherichia coli, GI1789896, Length=372, Percent_Identity=48.9247311827957, Blast_Score=377, Evalue=1e-106,
Organism=Escherichia coli, GI1787733, Length=372, Percent_Identity=48.3870967741936, Blast_Score=374, Evalue=1e-105,
Organism=Escherichia coli, GI1786924, Length=248, Percent_Identity=48.7903225806452, Blast_Score=247, Evalue=7e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002559 [H]

Pfam domain/function: PF01609 Transposase_11 [H]

EC number: NA

Molecular weight: Translated: 42001; Mature: 41869

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQITLINQLSIIRDTRQPRKVHHNLVDVLFLAITAVISGCEGWEEIQDFGNDKLDWLRK
CCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHH
YLPFSGGIPTDDTISRIFQLIDPKEFQKCFATWMKSCCEMSHGDVIAIDGKTLRGSFNKK
HCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEECCCCCC
DKSDTIHMVSAFAAANSVVLGQVKTNAKSNEITAIPKLLDLLDVRGCLVTIDAMGCQTKI
CCCHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHH
AKKIVDKGGDYLLPVKGNQERLQTALDGIFSIRRLELPETEAYTTKEKGHGREDSRMCMV
HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEE
ADANEIGDLVFEWPGLKTLGYAVSFRTEKDMQTTVAVKFYISSAKLDAKSLLEASRAHWT
ECCHHHHHHHEECCCCHHHHEEEEECCCCCCHHEEEEEEEEECCCCCHHHHHHHHHCCEE
VENNLHWQLDISMNEDSCRIRQQNSTENLATVRHTSLNLLKNEKSFDGGIKRKHKQANRS
EECCEEEEEEEEECCCCHHEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
DSYRELVVSGLSLL
HHHHHHHHHHHHCC
>Mature Secondary Structure 
SQITLINQLSIIRDTRQPRKVHHNLVDVLFLAITAVISGCEGWEEIQDFGNDKLDWLRK
CCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHH
YLPFSGGIPTDDTISRIFQLIDPKEFQKCFATWMKSCCEMSHGDVIAIDGKTLRGSFNKK
HCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEECCCCCC
DKSDTIHMVSAFAAANSVVLGQVKTNAKSNEITAIPKLLDLLDVRGCLVTIDAMGCQTKI
CCCHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHH
AKKIVDKGGDYLLPVKGNQERLQTALDGIFSIRRLELPETEAYTTKEKGHGREDSRMCMV
HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEE
ADANEIGDLVFEWPGLKTLGYAVSFRTEKDMQTTVAVKFYISSAKLDAKSLLEASRAHWT
ECCHHHHHHHEECCCCHHHHEEEEECCCCCCHHEEEEEEEEECCCCCHHHHHHHHHCCEE
VENNLHWQLDISMNEDSCRIRQQNSTENLATVRHTSLNLLKNEKSFDGGIKRKHKQANRS
EECCEEEEEEEEECCCCHHEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
DSYRELVVSGLSLL
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8387990; 8905232; 9278503 [H]