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The map label for this gene is rnfA

Identifier: 119944509

GI number: 119944509

Start: 932572

End: 933150

Strand: Reverse

Name: rnfA

Synonym: Ping_0738

Alternate gene names: 119944509

Gene position: 933150-932572 (Counterclockwise)

Preceding gene: 119944515

Following gene: 119944508

Centisome position: 20.47

GC content: 37.31

Gene sequence:

>579_bases
ATGAGCGATTATTTTTTACTGTTTATTGGTACTGTGTTAGTTAATAACTTCGTACTGGTCAAATTTTTAGGCTTATGCCC
GTTTATGGGTGTTTCTAATAAAATAGAAACAGCTGTTGGCATGTCATTTGCCACAACCTTTGTTTTAACCTTAACCGCTG
CGGTTTCATATATTGTCAATAAATATATTTTATTACCCTTAGATCTGGTTTATTTACAAACAATTGGTTTTATTTTGGTG
ATTGCTGTTGTTGTACAGTTCACGGAAATGGTAATGCACAAAACGAGTCCCACCTTATATCGATTGTTAGGGATCTTTTT
ACCACTGATAACCACTAACTGCGCGATTTTAGGGTTAGCATTACTGAATATTAATGAAGATCACGATTTTGTTGAGTCCA
TTATTTACGGATTTAGTGCCGGGGTTGGTTTTTCATTAGTCTTAGTGGTTTTTTCCTCCATGCGTGAACGCTTAGCAGCT
TCAGATATACCTTTGCCCTTCAAAGGAGGATCAATCGCGATGATCACCGCAGGATTAATGTCTCTTGCCTTTATGGGCTT
CACCGGCCTTATTAAGTAG

Upstream 100 bases:

>100_bases
TTTTTACCTTTTACACTGATCATTTGCGCTTTTATTGTTATCATACTGGCCTGTTAGAGCCCGCTAAATACACCTATAAA
GGTAGTGGAATTAAATTCTT

Downstream 100 bases:

>100_bases
TGGAATAATTATAAAATGATACTCAGTATAACGATAGCGATTGTAACCTTTGCCGTTTTAGGCATTATTTTTGGATCTTT
ATTAGGCTACTCGTCAATCC

Product: electron transport complex, RnfABCDGE type, A subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MSDYFLLFIGTVLVNNFVLVKFLGLCPFMGVSNKIETAVGMSFATTFVLTLTAAVSYIVNKYILLPLDLVYLQTIGFILV
IAVVVQFTEMVMHKTSPTLYRLLGIFLPLITTNCAILGLALLNINEDHDFVESIIYGFSAGVGFSLVLVVFSSMRERLAA
SDIPLPFKGGSIAMITAGLMSLAFMGFTGLIK

Sequences:

>Translated_192_residues
MSDYFLLFIGTVLVNNFVLVKFLGLCPFMGVSNKIETAVGMSFATTFVLTLTAAVSYIVNKYILLPLDLVYLQTIGFILV
IAVVVQFTEMVMHKTSPTLYRLLGIFLPLITTNCAILGLALLNINEDHDFVESIIYGFSAGVGFSLVLVVFSSMRERLAA
SDIPLPFKGGSIAMITAGLMSLAFMGFTGLIK
>Mature_191_residues
SDYFLLFIGTVLVNNFVLVKFLGLCPFMGVSNKIETAVGMSFATTFVLTLTAAVSYIVNKYILLPLDLVYLQTIGFILVI
AVVVQFTEMVMHKTSPTLYRLLGIFLPLITTNCAILGLALLNINEDHDFVESIIYGFSAGVGFSLVLVVFSSMRERLAAS
DIPLPFKGGSIAMITAGLMSLAFMGFTGLIK

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG4657

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family

Homologues:

Organism=Escherichia coli, GI1787914, Length=192, Percent_Identity=71.875, Blast_Score=296, Evalue=8e-82,
Organism=Escherichia coli, GI1787919, Length=160, Percent_Identity=33.125, Blast_Score=64, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFA_PSYIN (A1SSX5)

Other databases:

- EMBL:   CP000510
- RefSeq:   YP_942189.1
- STRING:   A1SSX5
- GeneID:   4624935
- GenomeReviews:   CP000510_GR
- KEGG:   pin:Ping_0738
- eggNOG:   COG4657
- HOGENOM:   HBG624915
- OMA:   LRTIAFI
- PhylomeDB:   A1SSX5
- BioCyc:   PING357804:PING_0738-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_00459
- InterPro:   IPR003667
- InterPro:   IPR011293
- PIRSF:   PIRSF006102
- TIGRFAMs:   TIGR01943

Pfam domain/function: PF02508 Rnf-Nqr

EC number: NA

Molecular weight: Translated: 20885; Mature: 20754

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x162a4fa8)-; HASH(0x167fbfb4)-; HASH(0x160abc78)-; HASH(0x1653f800)-; HASH(0x167c840c)-; HASH(0x16b679c8)-;

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDYFLLFIGTVLVNNFVLVKFLGLCPFMGVSNKIETAVGMSFATTFVLTLTAAVSYIVN
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KYILLPLDLVYLQTIGFILVIAVVVQFTEMVMHKTSPTLYRLLGIFLPLITTNCAILGLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
LLNINEDHDFVESIIYGFSAGVGFSLVLVVFSSMRERLAASDIPLPFKGGSIAMITAGLM
HHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
SLAFMGFTGLIK
HHHHHHHHHCCH
>Mature Secondary Structure 
SDYFLLFIGTVLVNNFVLVKFLGLCPFMGVSNKIETAVGMSFATTFVLTLTAAVSYIVN
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KYILLPLDLVYLQTIGFILVIAVVVQFTEMVMHKTSPTLYRLLGIFLPLITTNCAILGLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
LLNINEDHDFVESIIYGFSAGVGFSLVLVVFSSMRERLAASDIPLPFKGGSIAMITAGLM
HHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
SLAFMGFTGLIK
HHHHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA