| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is 119944497
Identifier: 119944497
GI number: 119944497
Start: 918976
End: 919890
Strand: Direct
Name: 119944497
Synonym: Ping_0726
Alternate gene names: NA
Gene position: 918976-919890 (Clockwise)
Preceding gene: 119944496
Following gene: 119944498
Centisome position: 20.15
GC content: 40.98
Gene sequence:
>915_bases ATGAAAAATAGATCAACATTAATTGCGTTTATTGGCGCACTTTTGATGCATATTATTGTTGGCACTCTGTTGCTTTTGAA TGTGAATTTTTCCAACCCTAAAATAAAACCTAAAAATGAAGTACCTATTATCAATGCCACCGTTGTTGACCAAAAATTGC TTGATAATTTGGCTCAGCGTCAAAGTGAAAAAAAACAAGCTGAAAGAAAGAAAGTAGAGCAAGAAAAACAGCGTATTGAA CAAGAGAAGAAAAAAGCAGCCGAACGGGTTGCTGCAGAAAAAAAACAAGCCGCAGAAAAGTTAAAAGCTAAACAGGATGC AGAAAAAGCTAAAAAAGTAGCCGCTGAAAAAGCGGCTGCTGAAAAAGTAGCTGCTGAAAAAGTAGCTGCTGAAAAAGTAG CTGCTGAAAAAGTAGCTGCTGAAAAAGCGGCTGCAGAAAAAGCGGCTGCAGAAAAAGCGGCTGCAGAAAAAGCGGCTGCA GAAAAAGCGGCTGCAGAAAAAGCGGCCGCTGAAAAAGCGGCTGCAGCGGCTAAAGTTAAGGCCGAACAAGAAAAGGAACG TTTACGTCGAGCTGAACTTGATAAGCAGATGGACGCGCAATTTGAAGATACCTTTTCAAATGCCCAGAGCTCTCGACAAT TATCCGAAATTGCCCGCTACACAGCGCTTATCCAAGATAAGATAGGACGAAACTGGCAAATTGAGCCCAGTATGAAAGGT AAAAGCTGCACCTTGAGCATTCGTTTAGCCGCAGATGGGTTAGTGATTAGCGCAAAGCGGAGCAGTGGTGATATTCAACT TTGTGAATCAGCTAAGCGTGCTGCGTTAAAAGCAAACACATTACCTATACCTAAAGATCCGGATATTTCAGCAAAATTCC GTGATTTTGATCTTAATTTAAAACCTGAATTTTAA
Upstream 100 bases:
>100_bases GTGATGGGGATGTTAACTATAAAAGCGTTATAGACTTAATGGTTTTGTTGCAATCTGCTGGTGTGCCTTCCATTGGACTA ATGACTGAGCCAGAAGAAGA
Downstream 100 bases:
>100_bases GGAAACCAAGCCATATGCTGTTACGTTTATTTTTATCAATTTCAATGATTATATTGTCGTCTCAGGCTTCTGCCCGCTTA GAAATTTTAATTACCGAAGG
Product: TolA family protein
Products: NA
Alternate protein names: LA Family Protein; LA-Like Protein; Protein lA; Membrane Anchored Protein In lA-TolQ-TolR Complex; LA Colicin Import Membrane Protein; And Transport-Associated Protein lA; LA Protein Membrane Component
Number of amino acids: Translated: 304; Mature: 304
Protein sequence:
>304_residues MKNRSTLIAFIGALLMHIIVGTLLLLNVNFSNPKIKPKNEVPIINATVVDQKLLDNLAQRQSEKKQAERKKVEQEKQRIE QEKKKAAERVAAEKKQAAEKLKAKQDAEKAKKVAAEKAAAEKVAAEKVAAEKVAAEKVAAEKAAAEKAAAEKAAAEKAAA EKAAAEKAAAEKAAAAAKVKAEQEKERLRRAELDKQMDAQFEDTFSNAQSSRQLSEIARYTALIQDKIGRNWQIEPSMKG KSCTLSIRLAADGLVISAKRSSGDIQLCESAKRAALKANTLPIPKDPDISAKFRDFDLNLKPEF
Sequences:
>Translated_304_residues MKNRSTLIAFIGALLMHIIVGTLLLLNVNFSNPKIKPKNEVPIINATVVDQKLLDNLAQRQSEKKQAERKKVEQEKQRIE QEKKKAAERVAAEKKQAAEKLKAKQDAEKAKKVAAEKAAAEKVAAEKVAAEKVAAEKVAAEKAAAEKAAAEKAAAEKAAA EKAAAEKAAAEKAAAAAKVKAEQEKERLRRAELDKQMDAQFEDTFSNAQSSRQLSEIARYTALIQDKIGRNWQIEPSMKG KSCTLSIRLAADGLVISAKRSSGDIQLCESAKRAALKANTLPIPKDPDISAKFRDFDLNLKPEF >Mature_304_residues MKNRSTLIAFIGALLMHIIVGTLLLLNVNFSNPKIKPKNEVPIINATVVDQKLLDNLAQRQSEKKQAERKKVEQEKQRIE QEKKKAAERVAAEKKQAAEKLKAKQDAEKAKKVAAEKAAAEKVAAEKVAAEKVAAEKVAAEKAAAEKAAAEKAAAEKAAA EKAAAEKAAAEKAAAAAKVKAEQEKERLRRAELDKQMDAQFEDTFSNAQSSRQLSEIARYTALIQDKIGRNWQIEPSMKG KSCTLSIRLAADGLVISAKRSSGDIQLCESAKRAALKANTLPIPKDPDISAKFRDFDLNLKPEF
Specific function: Unknown
COG id: COG3064
COG function: function code M; Membrane protein involved in colicin uptake
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33162; Mature: 33162
Theoretical pI: Translated: 10.36; Mature: 10.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNRSTLIAFIGALLMHIIVGTLLLLNVNFSNPKIKPKNEVPIINATVVDQKLLDNLAQR CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHH QSEKKQAERKKVEQEKQRIEQEKKKAAERVAAEKKQAAEKLKAKQDAEKAKKVAAEKAAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EKVAAEKVAAEKVAAEKVAAEKAAAEKAAAEKAAAEKAAAEKAAAEKAAAEKAAAAAKVK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AEQEKERLRRAELDKQMDAQFEDTFSNAQSSRQLSEIARYTALIQDKIGRNWQIEPSMKG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC KSCTLSIRLAADGLVISAKRSSGDIQLCESAKRAALKANTLPIPKDPDISAKFRDFDLNL CEEEEEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCC KPEF CCCC >Mature Secondary Structure MKNRSTLIAFIGALLMHIIVGTLLLLNVNFSNPKIKPKNEVPIINATVVDQKLLDNLAQR CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHH QSEKKQAERKKVEQEKQRIEQEKKKAAERVAAEKKQAAEKLKAKQDAEKAKKVAAEKAAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EKVAAEKVAAEKVAAEKVAAEKAAAEKAAAEKAAAEKAAAEKAAAEKAAAEKAAAAAKVK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AEQEKERLRRAELDKQMDAQFEDTFSNAQSSRQLSEIARYTALIQDKIGRNWQIEPSMKG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC KSCTLSIRLAADGLVISAKRSSGDIQLCESAKRAALKANTLPIPKDPDISAKFRDFDLNL CEEEEEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCC KPEF CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA