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The map label for this gene is cydB [H]

Identifier: 119944492

GI number: 119944492

Start: 915768

End: 916907

Strand: Direct

Name: cydB [H]

Synonym: Ping_0721

Alternate gene names: 119944492

Gene position: 915768-916907 (Clockwise)

Preceding gene: 119944491

Following gene: 119944493

Centisome position: 20.08

GC content: 41.75

Gene sequence:

>1140_bases
ATGTTTGATTACGAAACCTTAAAATTAATCTGGTGGTTATTGATAAGTGTTTTACTGATTGGTTTTGTTATTACCGATGG
GTTTGATATGGGAGTGGGTGCACTGCTGCCTTTTATGGGTAAAACCGATCAGGAACGGCGGATTATGATCAATAGCATTG
CGCCGCATTGGGAAGGAAATCAGGTCTGGTTAGTGCTGGCAGCCGGGGCTATCTTTGCTGCCTGGCCGACCGTTTACGCC
ACTGCATTTTCTGGTTTTTATGTAGCGATGATGCTGACCTTGTTTGCTTTGTTTTTCCGCCCGGTAGGCTTTGATTACCG
CAATAAAATCAGCGATCCGCGTTGGAGAAGCAGTTGGGACTGGGGGATTTTCATCGGTAGCGCTGTGCCACCGATCATTT
TTGGTGTCGCTTTTGGTAATTTGCTGCAAGGCGTGCCCTTTGTCTTTGATGAATACTTGCGTTCAACTTACCAGGGTAGT
TTTTTTGACTTGTTAAACCCTTTTGCTTTGTTAACGGGAGTTTTCTCTTTAACTTTATTTATTTTACAGGGCTCAACTTG
GCTGCAAATGAAAACTGAAGGCGTTGTGCAGCAACGAGCACGTTTGCTTTCATTATATTGTGCGCCATTAGCCATGCTGT
TGTTTGCATTGGCGGGAGTTTGGGTCGCTTACGGTATTGATGGTTATGTGATCACCTCATTAATGGATTTAAACGGGCCG
GCTAACCCGTTACTAAAATCTGCTCAGTTGCAATCGGGTGCCTGGTTAGCTAACTATGACAAATATCCGCTTACTATGAT
TGCACCATTAGTAGGGTTGTCATTTCCAATATTAGTTTGGATTGCCAGTAAGTTTAATCGTAATGCTTTTGCTTTTTTCT
TTAGCAGTGTTACCCAAGTGGGTGTATTAATGACTTTTGCCGTTAGTACATTCCCTTTTATTATGCCATCAAGCATTGAG
CCCAATTTCAGTTTAACGGTTTGGGATGCAGTCTCAAGTGAGATGACGCTTAATATTATGACCATGGCGGCTGCTATTTT
CTTGCCCATTATTTTACTTTATACCTGTTGGTGTTATTTCAAAATGTTTGGTCGAATTGGCAAAAAACATATGGAACAGA
ATAAAAATTCAGCATATTAA

Upstream 100 bases:

>100_bases
CCGGTTAGGGCCAAGTACCCTTAAAACAGGAAAATATCATTTCGAGCAGTTAGCTGATCACACACAAACACAAAACAATA
AACAGGGATAGGAGATTCTT

Downstream 100 bases:

>100_bases
TAATTTATAATAAGGGAATTTTATGTGGTATTTAGCGTGGATGTTAGGGGTTTTGTTGGCTTGCTCATTAGGTATTATTA
ATGCCCTGTGGTACGAGCAA

Product: cytochrome d ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MFDYETLKLIWWLLISVLLIGFVITDGFDMGVGALLPFMGKTDQERRIMINSIAPHWEGNQVWLVLAAGAIFAAWPTVYA
TAFSGFYVAMMLTLFALFFRPVGFDYRNKISDPRWRSSWDWGIFIGSAVPPIIFGVAFGNLLQGVPFVFDEYLRSTYQGS
FFDLLNPFALLTGVFSLTLFILQGSTWLQMKTEGVVQQRARLLSLYCAPLAMLLFALAGVWVAYGIDGYVITSLMDLNGP
ANPLLKSAQLQSGAWLANYDKYPLTMIAPLVGLSFPILVWIASKFNRNAFAFFFSSVTQVGVLMTFAVSTFPFIMPSSIE
PNFSLTVWDAVSSEMTLNIMTMAAAIFLPIILLYTCWCYFKMFGRIGKKHMEQNKNSAY

Sequences:

>Translated_379_residues
MFDYETLKLIWWLLISVLLIGFVITDGFDMGVGALLPFMGKTDQERRIMINSIAPHWEGNQVWLVLAAGAIFAAWPTVYA
TAFSGFYVAMMLTLFALFFRPVGFDYRNKISDPRWRSSWDWGIFIGSAVPPIIFGVAFGNLLQGVPFVFDEYLRSTYQGS
FFDLLNPFALLTGVFSLTLFILQGSTWLQMKTEGVVQQRARLLSLYCAPLAMLLFALAGVWVAYGIDGYVITSLMDLNGP
ANPLLKSAQLQSGAWLANYDKYPLTMIAPLVGLSFPILVWIASKFNRNAFAFFFSSVTQVGVLMTFAVSTFPFIMPSSIE
PNFSLTVWDAVSSEMTLNIMTMAAAIFLPIILLYTCWCYFKMFGRIGKKHMEQNKNSAY
>Mature_379_residues
MFDYETLKLIWWLLISVLLIGFVITDGFDMGVGALLPFMGKTDQERRIMINSIAPHWEGNQVWLVLAAGAIFAAWPTVYA
TAFSGFYVAMMLTLFALFFRPVGFDYRNKISDPRWRSSWDWGIFIGSAVPPIIFGVAFGNLLQGVPFVFDEYLRSTYQGS
FFDLLNPFALLTGVFSLTLFILQGSTWLQMKTEGVVQQRARLLSLYCAPLAMLLFALAGVWVAYGIDGYVITSLMDLNGP
ANPLLKSAQLQSGAWLANYDKYPLTMIAPLVGLSFPILVWIASKFNRNAFAFFFSSVTQVGVLMTFAVSTFPFIMPSSIE
PNFSLTVWDAVSSEMTLNIMTMAAAIFLPIILLYTCWCYFKMFGRIGKKHMEQNKNSAY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=379, Percent_Identity=59.3667546174143, Blast_Score=476, Evalue=1e-136,
Organism=Escherichia coli, GI1787213, Length=379, Percent_Identity=55.4089709762533, Blast_Score=433, Evalue=1e-122,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 42594; Mature: 42594

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDYETLKLIWWLLISVLLIGFVITDGFDMGVGALLPFMGKTDQERRIMINSIAPHWEGN
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHEEECCCCCCCCCC
QVWLVLAAGAIFAAWPTVYATAFSGFYVAMMLTLFALFFRPVGFDYRNKISDPRWRSSWD
EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCC
WGIFIGSAVPPIIFGVAFGNLLQGVPFVFDEYLRSTYQGSFFDLLNPFALLTGVFSLTLF
CCEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
ILQGSTWLQMKTEGVVQQRARLLSLYCAPLAMLLFALAGVWVAYGIDGYVITSLMDLNGP
HHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
ANPLLKSAQLQSGAWLANYDKYPLTMIAPLVGLSFPILVWIASKFNRNAFAFFFSSVTQV
CCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
GVLMTFAVSTFPFIMPSSIEPNFSLTVWDAVSSEMTLNIMTMAAAIFLPIILLYTCWCYF
HHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KMFGRIGKKHMEQNKNSAY
HHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MFDYETLKLIWWLLISVLLIGFVITDGFDMGVGALLPFMGKTDQERRIMINSIAPHWEGN
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHEEECCCCCCCCCC
QVWLVLAAGAIFAAWPTVYATAFSGFYVAMMLTLFALFFRPVGFDYRNKISDPRWRSSWD
EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCC
WGIFIGSAVPPIIFGVAFGNLLQGVPFVFDEYLRSTYQGSFFDLLNPFALLTGVFSLTLF
CCEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
ILQGSTWLQMKTEGVVQQRARLLSLYCAPLAMLLFALAGVWVAYGIDGYVITSLMDLNGP
HHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
ANPLLKSAQLQSGAWLANYDKYPLTMIAPLVGLSFPILVWIASKFNRNAFAFFFSSVTQV
CCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
GVLMTFAVSTFPFIMPSSIEPNFSLTVWDAVSSEMTLNIMTMAAAIFLPIILLYTCWCYF
HHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KMFGRIGKKHMEQNKNSAY
HHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]