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The map label for this gene is cydA [H]

Identifier: 119944491

GI number: 119944491

Start: 914178

End: 915758

Strand: Direct

Name: cydA [H]

Synonym: Ping_0720

Alternate gene names: 119944491

Gene position: 914178-915758 (Clockwise)

Preceding gene: 119944490

Following gene: 119944492

Centisome position: 20.05

GC content: 42.88

Gene sequence:

>1581_bases
ATGGATGACATAGTTGATTTATCGCGGTTACAATTTGCAATGACCGCCTTGTATCACTTTTTATTTGTACCGCTAACACT
CGGCTTGGCGTGGTTATTGCTGATCATGGAATCGTTATATGTAATGACCGGTAAGCAAGTTTACCAAGATATGACCAAGT
TTTGGGGTAAACTATTTGGTATTAACTTCGCGCTTGGTGTAGCCACGGGTTTAACCATGGAGTTCCAGTTTGGTACTAAC
TGGTCTTATTATTCGCATTATGTTGGTGATGTATTTGGTGCACCCTTAGCTATTGAAGGCATGATGGCCTTCTTTTTAGA
GTCCACCTTTGTGGGTTTATTCTTTTTCGGATGGGAGAGACTGAGTAAATTGCAGCATCTAGGGGCTACTTTTTTGGTGG
CATTCGGTTCAAGTATGTCGGCGTTATGGATTTTAGTTGCCAATGCCTGGATGCAGAACCCGGTTGGTGCTGAGTTTAAC
TATACAACCATGCGCATGGAAATGACCAGTTTTGCTGATTTAGTTTTTAATCCGGTTGCACAAGTCAAATTTGTGCATAC
CGTGGCCTCTGGTTATGTCACAGGCGCCATGTTTGTATTGGCAATCAGCGCATATTATTTGCTGAAAGGGCGTGATCTTG
CCTTTGCCAAACGTTCTTTTGCCATTGCTGCAGCTTTTGGTACCGCCGGTATTTTATCAACTATTGTATTAGGTGATGAA
AGTGGTTATGAGGTAGGTGATGTGCAGCAAGTCAAACTCGCCGCGATTGAGTCCGAATGGGAAACCCATCCTGCTCCCGC
GGCTTTCACGCTGTTTGGCATCCCTAATCAGGACGAGCAGCGTACCGACTATGCCATTAAAATTCCCTATGCTTTGGGTA
TTATTGCAACGCGTTCACTCGATGAGGAAGTCATTGGATTAAAAGAGTTAATGGTGGAACATGAAGCCCGTATTCGCAAC
GGAATGATTGCTTACGCCCATTTAACGGATCTGCGCAATGGTGATGAATCGGCTGAAAAAATAGCCGCCTTTGAAGCCGT
GAAAATAGATTTAGGTTACGGACTATTGCTGAAAAGATATGCGCCAAATGTTGTTGATGCTACTGAAGAACAAATTCAGA
TGGCTGTTGATAACAGTATTCCCGGGGTCGCGCCGATTTTTTGGGCCTTTAGAATCATGGTCGGCTGTGGTTTGTTGATG
TTATTTATCTTCTTATTTGCATTTTATCAATCAGCTCGTAGCCGGATAGGCAAAAATAAAACTTTCCTTAAAATTGTACT
TTATAGTCTGCCGTTACCTTGGATAGCAATAGAGGCAGGATGGATTGTTGCCGAGTATGGTCGTCAGCCCTGGGCGATTG
CAGAAATATTGCCAACCCATATGAGTGTCTCAAGTATTTCAAGTGAACAACTGCTCTTTAGCATTATTTCAATTGCCGCA
TTCTATACCGTATTAATAGCGGTTGAGATGTACTTAATGTTCCACTTTGCCCGGTTAGGGCCAAGTACCCTTAAAACAGG
AAAATATCATTTCGAGCAGTTAGCTGATCACACACAAACACAAAACAATAAACAGGGATAG

Upstream 100 bases:

>100_bases
TCCTATTGCGTTTTATGAAGATCATCTTTTTGGAGAAGTTGCCTCGCAAGAAATATTGCTGCAGAACAATAACAAATAAT
TATTTATTTAGGAGAAACGA

Downstream 100 bases:

>100_bases
GAGATTCTTATGTTTGATTACGAAACCTTAAAATTAATCTGGTGGTTATTGATAAGTGTTTTACTGATTGGTTTTGTTAT
TACCGATGGGTTTGATATGG

Product: cytochrome bd ubiquinol oxidase, subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 526; Mature: 526

Protein sequence:

>526_residues
MDDIVDLSRLQFAMTALYHFLFVPLTLGLAWLLLIMESLYVMTGKQVYQDMTKFWGKLFGINFALGVATGLTMEFQFGTN
WSYYSHYVGDVFGAPLAIEGMMAFFLESTFVGLFFFGWERLSKLQHLGATFLVAFGSSMSALWILVANAWMQNPVGAEFN
YTTMRMEMTSFADLVFNPVAQVKFVHTVASGYVTGAMFVLAISAYYLLKGRDLAFAKRSFAIAAAFGTAGILSTIVLGDE
SGYEVGDVQQVKLAAIESEWETHPAPAAFTLFGIPNQDEQRTDYAIKIPYALGIIATRSLDEEVIGLKELMVEHEARIRN
GMIAYAHLTDLRNGDESAEKIAAFEAVKIDLGYGLLLKRYAPNVVDATEEQIQMAVDNSIPGVAPIFWAFRIMVGCGLLM
LFIFLFAFYQSARSRIGKNKTFLKIVLYSLPLPWIAIEAGWIVAEYGRQPWAIAEILPTHMSVSSISSEQLLFSIISIAA
FYTVLIAVEMYLMFHFARLGPSTLKTGKYHFEQLADHTQTQNNKQG

Sequences:

>Translated_526_residues
MDDIVDLSRLQFAMTALYHFLFVPLTLGLAWLLLIMESLYVMTGKQVYQDMTKFWGKLFGINFALGVATGLTMEFQFGTN
WSYYSHYVGDVFGAPLAIEGMMAFFLESTFVGLFFFGWERLSKLQHLGATFLVAFGSSMSALWILVANAWMQNPVGAEFN
YTTMRMEMTSFADLVFNPVAQVKFVHTVASGYVTGAMFVLAISAYYLLKGRDLAFAKRSFAIAAAFGTAGILSTIVLGDE
SGYEVGDVQQVKLAAIESEWETHPAPAAFTLFGIPNQDEQRTDYAIKIPYALGIIATRSLDEEVIGLKELMVEHEARIRN
GMIAYAHLTDLRNGDESAEKIAAFEAVKIDLGYGLLLKRYAPNVVDATEEQIQMAVDNSIPGVAPIFWAFRIMVGCGLLM
LFIFLFAFYQSARSRIGKNKTFLKIVLYSLPLPWIAIEAGWIVAEYGRQPWAIAEILPTHMSVSSISSEQLLFSIISIAA
FYTVLIAVEMYLMFHFARLGPSTLKTGKYHFEQLADHTQTQNNKQG
>Mature_526_residues
MDDIVDLSRLQFAMTALYHFLFVPLTLGLAWLLLIMESLYVMTGKQVYQDMTKFWGKLFGINFALGVATGLTMEFQFGTN
WSYYSHYVGDVFGAPLAIEGMMAFFLESTFVGLFFFGWERLSKLQHLGATFLVAFGSSMSALWILVANAWMQNPVGAEFN
YTTMRMEMTSFADLVFNPVAQVKFVHTVASGYVTGAMFVLAISAYYLLKGRDLAFAKRSFAIAAAFGTAGILSTIVLGDE
SGYEVGDVQQVKLAAIESEWETHPAPAAFTLFGIPNQDEQRTDYAIKIPYALGIIATRSLDEEVIGLKELMVEHEARIRN
GMIAYAHLTDLRNGDESAEKIAAFEAVKIDLGYGLLLKRYAPNVVDATEEQIQMAVDNSIPGVAPIFWAFRIMVGCGLLM
LFIFLFAFYQSARSRIGKNKTFLKIVLYSLPLPWIAIEAGWIVAEYGRQPWAIAEILPTHMSVSSISSEQLLFSIISIAA
FYTVLIAVEMYLMFHFARLGPSTLKTGKYHFEQLADHTQTQNNKQG

Specific function: May be involved in maintaining the low intracellular oxygen concentration required for nitrogen fixation [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=519, Percent_Identity=71.0982658959538, Blast_Score=787, Evalue=0.0,
Organism=Escherichia coli, GI1787212, Length=506, Percent_Identity=61.4624505928854, Blast_Score=645, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 58689; Mature: 58689

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDIVDLSRLQFAMTALYHFLFVPLTLGLAWLLLIMESLYVMTGKQVYQDMTKFWGKLFG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
INFALGVATGLTMEFQFGTNWSYYSHYVGDVFGAPLAIEGMMAFFLESTFVGLFFFGWER
CHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LSKLQHLGATFLVAFGSSMSALWILVANAWMQNPVGAEFNYTTMRMEMTSFADLVFNPVA
HHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHCHHH
QVKFVHTVASGYVTGAMFVLAISAYYLLKGRDLAFAKRSFAIAAAFGTAGILSTIVLGDE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCC
SGYEVGDVQQVKLAAIESEWETHPAPAAFTLFGIPNQDEQRTDYAIKIPYALGIIATRSL
CCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCHHHHHHHHCCC
DEEVIGLKELMVEHEARIRNGMIAYAHLTDLRNGDESAEKIAAFEAVKIDLGYGLLLKRY
CHHHHHHHHHHHHHHHHHHCCEEEEEEHHHCCCCCHHHHHHHHHHHEEEECCHHHHHHHH
APNVVDATEEQIQMAVDNSIPGVAPIFWAFRIMVGCGLLMLFIFLFAFYQSARSRIGKNK
CCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TFLKIVLYSLPLPWIAIEAGWIVAEYGRQPWAIAEILPTHMSVSSISSEQLLFSIISIAA
HHHHHHHHHCCCCEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
FYTVLIAVEMYLMFHFARLGPSTLKTGKYHFEQLADHTQTQNNKQG
HHHHHHHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDDIVDLSRLQFAMTALYHFLFVPLTLGLAWLLLIMESLYVMTGKQVYQDMTKFWGKLFG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
INFALGVATGLTMEFQFGTNWSYYSHYVGDVFGAPLAIEGMMAFFLESTFVGLFFFGWER
CHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LSKLQHLGATFLVAFGSSMSALWILVANAWMQNPVGAEFNYTTMRMEMTSFADLVFNPVA
HHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHCHHH
QVKFVHTVASGYVTGAMFVLAISAYYLLKGRDLAFAKRSFAIAAAFGTAGILSTIVLGDE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCC
SGYEVGDVQQVKLAAIESEWETHPAPAAFTLFGIPNQDEQRTDYAIKIPYALGIIATRSL
CCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCHHHHHHHHCCC
DEEVIGLKELMVEHEARIRNGMIAYAHLTDLRNGDESAEKIAAFEAVKIDLGYGLLLKRY
CHHHHHHHHHHHHHHHHHHCCEEEEEEHHHCCCCCHHHHHHHHHHHEEEECCHHHHHHHH
APNVVDATEEQIQMAVDNSIPGVAPIFWAFRIMVGCGLLMLFIFLFAFYQSARSRIGKNK
CCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TFLKIVLYSLPLPWIAIEAGWIVAEYGRQPWAIAEILPTHMSVSSISSEQLLFSIISIAA
HHHHHHHHHCCCCEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
FYTVLIAVEMYLMFHFARLGPSTLKTGKYHFEQLADHTQTQNNKQG
HHHHHHHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1655703; 1660468; 2170336 [H]