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The map label for this gene is rbsB [H]

Identifier: 119944128

GI number: 119944128

Start: 444606

End: 445484

Strand: Direct

Name: rbsB [H]

Synonym: Ping_0343

Alternate gene names: 119944128

Gene position: 444606-445484 (Clockwise)

Preceding gene: 119944127

Following gene: 119944129

Centisome position: 9.75

GC content: 43.46

Gene sequence:

>879_bases
ATGAAAATATTTACTAAACTGATTACCGCAGCTGTTATTTCAGCTTCTTTCAGTGCCGGTGCGATGGCTCAAGATACTAT
TGCTATGGTTGTTTCAACCTTAAATAATCCCTTTTTTGTGAGTATGAAAGAGGGGGCTGAGGATAAGGCAAAGGAACTAG
GCTATGAGCTGATTGTGCTTGATTCACAAAATGACCCCAGCAAAGAGTTATCAAATGTTGAAGATCTTGTTGTTCGAGGC
GTCAAAGCGATCTTAATCAATCCGACTGATTCCGATGCGGTGACCAATGCGATTCGCATTGCTAATCAAGCTGATATTCC
GGTGTTAACACTCGACCGTGGTGCAGCAGGCGGTGATGTTGTTACTCATATTGCATCGGATAACATAGCCGGTGGCGAAA
TGGCTGGTAAATTTATTAATGATAAAATCGGCAAAAATGCCAAAGTGGTACAGCTGGAAGGTATTGCCGGTACATCGGCT
GCGCGTGAGCGTGGTGAAGGATTCATGAAAGCTGTTAGCACCTACAACATGGATTTGTTAGCCAGCCAACCTGCCGATTT
TGACCGTACCAAAGGTCTGAATGTAATGGAAAATCTTCTTGCCTCTAATCCGGACACCCAAGCTGTATTTGCCCAAAATG
ACGAAATGGCATTAGGGGCTATTCGTGCCGTGCAGGCATCGGGCAAAAAAATATTAGTGGTTGGTTTTGATGGAACAGAA
GGTGGTATTGCCGCTGTAAAACGCGGATCGCTTGGCGCAACTATTGCTCAACAGCCTCGTATGATTGGTTCTCTCGGAGT
TGAATCTGCAGCAAAAGTACTTAAAGGTGAAGCTGTTGAAAAATACATTCCAGTATCATTAATGATGATTGTTAAATAA

Upstream 100 bases:

>100_bases
GCTGTACTGGTCGATAATAAACAGAAATAAAATTTTATTTTACCCCCCGCGGACGTTGTAAAACGCCGTAATATTATTAA
CAAAAGCAAAGGAATATAAC

Downstream 100 bases:

>100_bases
TTTAAAATGCTTACTTAAATTAAATCAAGCAGCCTGATGATTTTATTCTCAGGCTGTATTTTTACTCTTAAAATCTAAAA
TAAATTGTTTAAGCTTGTTT

Product: D-ribose transporter subunit RbsB

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MKIFTKLITAAVISASFSAGAMAQDTIAMVVSTLNNPFFVSMKEGAEDKAKELGYELIVLDSQNDPSKELSNVEDLVVRG
VKAILINPTDSDAVTNAIRIANQADIPVLTLDRGAAGGDVVTHIASDNIAGGEMAGKFINDKIGKNAKVVQLEGIAGTSA
ARERGEGFMKAVSTYNMDLLASQPADFDRTKGLNVMENLLASNPDTQAVFAQNDEMALGAIRAVQASGKKILVVGFDGTE
GGIAAVKRGSLGATIAQQPRMIGSLGVESAAKVLKGEAVEKYIPVSLMMIVK

Sequences:

>Translated_292_residues
MKIFTKLITAAVISASFSAGAMAQDTIAMVVSTLNNPFFVSMKEGAEDKAKELGYELIVLDSQNDPSKELSNVEDLVVRG
VKAILINPTDSDAVTNAIRIANQADIPVLTLDRGAAGGDVVTHIASDNIAGGEMAGKFINDKIGKNAKVVQLEGIAGTSA
ARERGEGFMKAVSTYNMDLLASQPADFDRTKGLNVMENLLASNPDTQAVFAQNDEMALGAIRAVQASGKKILVVGFDGTE
GGIAAVKRGSLGATIAQQPRMIGSLGVESAAKVLKGEAVEKYIPVSLMMIVK
>Mature_292_residues
MKIFTKLITAAVISASFSAGAMAQDTIAMVVSTLNNPFFVSMKEGAEDKAKELGYELIVLDSQNDPSKELSNVEDLVVRG
VKAILINPTDSDAVTNAIRIANQADIPVLTLDRGAAGGDVVTHIASDNIAGGEMAGKFINDKIGKNAKVVQLEGIAGTSA
ARERGEGFMKAVSTYNMDLLASQPADFDRTKGLNVMENLLASNPDTQAVFAQNDEMALGAIRAVQASGKKILVVGFDGTE
GGIAAVKRGSLGATIAQQPRMIGSLGVESAAKVLKGEAVEKYIPVSLMMIVK

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=293, Percent_Identity=64.8464163822526, Blast_Score=387, Evalue=1e-109,
Organism=Escherichia coli, GI1790526, Length=284, Percent_Identity=36.6197183098592, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1790674, Length=230, Percent_Identity=32.1739130434783, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1790194, Length=278, Percent_Identity=25.5395683453237, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788473, Length=275, Percent_Identity=28, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789990, Length=237, Percent_Identity=27.8481012658228, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787948, Length=289, Percent_Identity=23.5294117647059, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788898, Length=243, Percent_Identity=27.5720164609054, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790715, Length=250, Percent_Identity=23.2, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 30529; Mature: 30529

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIFTKLITAAVISASFSAGAMAQDTIAMVVSTLNNPFFVSMKEGAEDKAKELGYELIVL
CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCEEEEEE
DSQNDPSKELSNVEDLVVRGVKAILINPTDSDAVTNAIRIANQADIPVLTLDRGAAGGDV
ECCCCCHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCHH
VTHIASDNIAGGEMAGKFINDKIGKNAKVVQLEGIAGTSAARERGEGFMKAVSTYNMDLL
EEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEE
ASQPADFDRTKGLNVMENLLASNPDTQAVFAQNDEMALGAIRAVQASGKKILVVGFDGTE
ECCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCC
GGIAAVKRGSLGATIAQQPRMIGSLGVESAAKVLKGEAVEKYIPVSLMMIVK
CCHHEEECCCCCCHHHHCCHHHHHCCHHHHHHHHHCHHHHHHCCEEEEEEEC
>Mature Secondary Structure
MKIFTKLITAAVISASFSAGAMAQDTIAMVVSTLNNPFFVSMKEGAEDKAKELGYELIVL
CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCEEEEEE
DSQNDPSKELSNVEDLVVRGVKAILINPTDSDAVTNAIRIANQADIPVLTLDRGAAGGDV
ECCCCCHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCHH
VTHIASDNIAGGEMAGKFINDKIGKNAKVVQLEGIAGTSAARERGEGFMKAVSTYNMDLL
EEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEE
ASQPADFDRTKGLNVMENLLASNPDTQAVFAQNDEMALGAIRAVQASGKKILVVGFDGTE
ECCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCC
GGIAAVKRGSLGATIAQQPRMIGSLGVESAAKVLKGEAVEKYIPVSLMMIVK
CCHHEEECCCCCCHHHHCCHHHHHCCHHHHHHHHHCHHHHHHCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]