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The map label for this gene is kdkA [H]

Identifier: 119944115

GI number: 119944115

Start: 430068

End: 430763

Strand: Direct

Name: kdkA [H]

Synonym: Ping_0330

Alternate gene names: 119944115

Gene position: 430068-430763 (Clockwise)

Preceding gene: 119944112

Following gene: 119944121

Centisome position: 9.43

GC content: 37.36

Gene sequence:

>696_bases
GTGAAAATTATTGAATGTAATCAGCAAAGCTTCTTTTTTAATGCAGAAAAATTTTCTACATTACTGTTTGATCTTACCTT
CCTTCAGGAAAATAATCGAGTGATAGGGAATTCGGTTGGGCGGGGTATTACCTGGTTTTTTGAGCATCAACAAAAAAAAT
ATGTTCTGCGCCATTATTTTCGTGGCGGTTTTATTGGGAAAATAAATCCTGATAATTTTTTTTATGCCGGTTTAAAACGT
ACTCGTGCTTATAACGAGTTTATATTACTCGATAAAATGGCACAATTAAATTTACCTGTGCCGTTGCCCTATGCGGGCAG
AATTAGCCGCAAAGGTCTCTTTTATCAAGCGGATCTTATTATTGAGTTGATTGACGGGGCGCATGATTTGGTGGCCGTTC
TCAATAAGCGGAAAATAGGCGAAGCGCAATGGCGTGAAATAGGCCGGGTGATCCGTTTATTTCATGATAATAATATTTAT
CACAGCGATCTGAACAGCCACAATATTATGCTGGACAAGCACAATAAGGTCTGGTTAATTGATTTTGATAAATGTGCGCA
AATAAAAACGGGTGTTTGGAAAGAAAAGACGCTAGCGCGCTTATTACGCTCTTTGCGCAAAGAAAAATCGAAAAAAAACC
ACTTAAATTGGTCTGAACAGGATTGGCTTTCTTTAATTTTTGGCTATCAAAATTAG

Upstream 100 bases:

>100_bases
AAGGTGAGCAAAAAAATTAAATGATAATCGATACATTATGCAAAGGGGCGCCGCTAATGTAAAATAACAGACCTTCATTT
ATCCAAATAAAGTTATAAAT

Downstream 100 bases:

>100_bases
CTTGTAAGTTGATTTTTAACGTCAGTTCACTTAACGAGTTGTAAGCTACTTATTTTGCACTATGCCAAAATTTGTCCACG
CTTTTTTTTCTTTTCTAATT

Product: 3-deoxy-D-manno-octulosonic-acid kinase

Products: NA

Alternate protein names: KDO kinase [H]

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MKIIECNQQSFFFNAEKFSTLLFDLTFLQENNRVIGNSVGRGITWFFEHQQKKYVLRHYFRGGFIGKINPDNFFYAGLKR
TRAYNEFILLDKMAQLNLPVPLPYAGRISRKGLFYQADLIIELIDGAHDLVAVLNKRKIGEAQWREIGRVIRLFHDNNIY
HSDLNSHNIMLDKHNKVWLIDFDKCAQIKTGVWKEKTLARLLRSLRKEKSKKNHLNWSEQDWLSLIFGYQN

Sequences:

>Translated_231_residues
MKIIECNQQSFFFNAEKFSTLLFDLTFLQENNRVIGNSVGRGITWFFEHQQKKYVLRHYFRGGFIGKINPDNFFYAGLKR
TRAYNEFILLDKMAQLNLPVPLPYAGRISRKGLFYQADLIIELIDGAHDLVAVLNKRKIGEAQWREIGRVIRLFHDNNIY
HSDLNSHNIMLDKHNKVWLIDFDKCAQIKTGVWKEKTLARLLRSLRKEKSKKNHLNWSEQDWLSLIFGYQN
>Mature_231_residues
MKIIECNQQSFFFNAEKFSTLLFDLTFLQENNRVIGNSVGRGITWFFEHQQKKYVLRHYFRGGFIGKINPDNFFYAGLKR
TRAYNEFILLDKMAQLNLPVPLPYAGRISRKGLFYQADLIIELIDGAHDLVAVLNKRKIGEAQWREIGRVIRLFHDNNIY
HSDLNSHNIMLDKHNKVWLIDFDKCAQIKTGVWKEKTLARLLRSLRKEKSKKNHLNWSEQDWLSLIFGYQN

Specific function: ATP-dependent phosphorylation of 3-deoxy-D-manno- octulosonic acid at the 4-OH position [H]

COG id: COG0515

COG function: function code RTKL; Serine/threonine protein kinase

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the protein kinase superfamily. KdkA/rfaP family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022826
- InterPro:   IPR011009
- InterPro:   IPR010440
- InterPro:   IPR000719 [H]

Pfam domain/function: PF06293 Kdo [H]

EC number: NA

Molecular weight: Translated: 27355; Mature: 27355

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: PS50011 PROTEIN_KINASE_DOM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIIECNQQSFFFNAEKFSTLLFDLTFLQENNRVIGNSVGRGITWFFEHQQKKYVLRHYF
CCEEEECCCCEEECHHHHHHHHHHHEEHHCCCEEECCCCCCCEEEEEHHHHHHHHHHHHH
RGGFIGKINPDNFFYAGLKRTRAYNEFILLDKMAQLNLPVPLPYAGRISRKGLFYQADLI
CCCEEEEECCCCEEEHHHHHHHHHHHHHEEEHHHHCCCCCCCCCCCCCCCCCCEEHHHHH
IELIDGAHDLVAVLNKRKIGEAQWREIGRVIRLFHDNNIYHSDLNSHNIMLDKHNKVWLI
HHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEECCCEEEEE
DFDKCAQIKTGVWKEKTLARLLRSLRKEKSKKNHLNWSEQDWLSLIFGYQN
ECHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MKIIECNQQSFFFNAEKFSTLLFDLTFLQENNRVIGNSVGRGITWFFEHQQKKYVLRHYF
CCEEEECCCCEEECHHHHHHHHHHHEEHHCCCEEECCCCCCCEEEEEHHHHHHHHHHHHH
RGGFIGKINPDNFFYAGLKRTRAYNEFILLDKMAQLNLPVPLPYAGRISRKGLFYQADLI
CCCEEEEECCCCEEEHHHHHHHHHHHHHEEEHHHHCCCCCCCCCCCCCCCCCCEEHHHHH
IELIDGAHDLVAVLNKRKIGEAQWREIGRVIRLFHDNNIYHSDLNSHNIMLDKHNKVWLI
HHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEECCCEEEEE
DFDKCAQIKTGVWKEKTLARLLRSLRKEKSKKNHLNWSEQDWLSLIFGYQN
ECHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA