Definition | Psychromonas ingrahamii 37, complete genome. |
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Accession | NC_008709 |
Length | 4,559,598 |
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The map label for this gene is wcaL [C]
Identifier: 119944121
GI number: 119944121
Start: 436339
End: 437538
Strand: Direct
Name: wcaL [C]
Synonym: Ping_0336
Alternate gene names: 119944121
Gene position: 436339-437538 (Clockwise)
Preceding gene: 119944115
Following gene: 119944122
Centisome position: 9.57
GC content: 36.67
Gene sequence:
>1200_bases ATGCAATTATTTAAAGTGGGATCTCAACTTAGACCTGTAAGTTCATATATACCAAAGATGTTTTTCCAAACAGGTAAGGT ATATGTGTATACCTTAATTATGAGTGGATTAAATATGAATATTCTTGAACTTTGTTTGTCAGATTCGTTAGGTGGCTTAG AGCTGCATTTCAGAGATTTTTCTGTTTGGTTAGATGAACAACAGAGTTCTGAGGGGCGAATTTTTGTTGCAACAAGATCA GAAACACCTTTAGCAAGCCGAATGGAAAGTGATCTTTGCTTAACTAACCGTAACTTATGGCATGCCGCCAGATTGTCAAA ATTTATATCAGCAAATAAAATTGACGTTGTACATATTCATGATAAAAAAGATCTGCCTTTGCTGGCTTTGGTCAAATCAA TCTGTTCTTACCCGTTTAAACTTGCGCATACTCGCCATATGTCTTTACCGGGGGGGAAACGTGATTTTTACCATAGCTGG CTGTATGGCAAAGTAGATGCTTATTTTGTGATTACAGAATGGATGAAATCACAGGTGATTAATAATTTACCTCTCGCGCC TGAAAAAATTCATAAAATAAATTTGGGAACTGCTGTTGTTGAGCGCTGCAGTGAGACTGAACTTTCTGAACTGAAAGATA ATATTTTTTCTGAGCATCAGGGGTTATGGTTGGCTAATATTGCGCGCATTCAGCATGGTAAAGGCCAACATGTTTTTTTA GATGCTATTAAGCAATTAAAAGATAAAGGAATTCAAGTGGCCGGCGTCATTGCCGGTGGGACGGATGACCCTCAATATGT AAAACAGCTTGAAGATTATATTGAGCTGCACCAGCTTAAAGTGAAAATATTTGGTCATCGTGATGATATTCCAGTCCTTA TTCAAGCGATGGATGCTGTGGTATTAACCACTGAATGCGAAACATTTGGCTTGATTATGATTGAAGCTATGATGGCGGGG GTAGTTGCTATTGGCTCCAATTCAGGCGGAGTGCCTGAAATTATTGATCATCTTGAAAATGGATTGCTGTTCAATGTATT TGATCCTCAAGATTTGTCCAAACAGATTCAATTATTGGATTTATCCAGCGAGTTAAAAGAAAAATTAGCATTGAAAGGAC AACAAAAAGCATTACAGCGCTTTGAAAAGAAAAAACAATTTTTAGCGTTTAAAGAAAAGTTATTAAATTTAGAAGAATGA
Upstream 100 bases:
>100_bases CTATACTGCTGCCGATAAAACCTGCACCACCTGTAACTATAAACATGTTCTCACCTCCGCATGGAATCTAATTTAATATA AAAATTGTTGTCATTATACC
Downstream 100 bases:
>100_bases AAGATCGATATTTTTTGAAAGTTTCCAGATTTAAAAAGCACTATTTGGGACGTTATTTTGGGCTAGGGGATATTTAGCCC ACCCCTTTGAGCCTGAGACC
Product: glycosyl transferase, group 1
Products: NA
Alternate protein names: Glycosyl Transferase Group 1 Family Protein; Group 1 Glycosyl Transferase; Glycosyl Transferase; Lipopolysaccharide Biosynthesis Protein; Lipopolysaccharide N-Acetylglucosaminyltransferase; Glycosyltransferase WalR; Glycosyltransferase-Like Protein; Glycosyl Transferase Group 1 Protein; First Mannosyl Transferase WbaZ; A-Glycosyltransferase; Group 1 Family Glycosyl Transferase; Galactosyltransferase
Number of amino acids: Translated: 399; Mature: 399
Protein sequence:
>399_residues MQLFKVGSQLRPVSSYIPKMFFQTGKVYVYTLIMSGLNMNILELCLSDSLGGLELHFRDFSVWLDEQQSSEGRIFVATRS ETPLASRMESDLCLTNRNLWHAARLSKFISANKIDVVHIHDKKDLPLLALVKSICSYPFKLAHTRHMSLPGGKRDFYHSW LYGKVDAYFVITEWMKSQVINNLPLAPEKIHKINLGTAVVERCSETELSELKDNIFSEHQGLWLANIARIQHGKGQHVFL DAIKQLKDKGIQVAGVIAGGTDDPQYVKQLEDYIELHQLKVKIFGHRDDIPVLIQAMDAVVLTTECETFGLIMIEAMMAG VVAIGSNSGGVPEIIDHLENGLLFNVFDPQDLSKQIQLLDLSSELKEKLALKGQQKALQRFEKKKQFLAFKEKLLNLEE
Sequences:
>Translated_399_residues MQLFKVGSQLRPVSSYIPKMFFQTGKVYVYTLIMSGLNMNILELCLSDSLGGLELHFRDFSVWLDEQQSSEGRIFVATRS ETPLASRMESDLCLTNRNLWHAARLSKFISANKIDVVHIHDKKDLPLLALVKSICSYPFKLAHTRHMSLPGGKRDFYHSW LYGKVDAYFVITEWMKSQVINNLPLAPEKIHKINLGTAVVERCSETELSELKDNIFSEHQGLWLANIARIQHGKGQHVFL DAIKQLKDKGIQVAGVIAGGTDDPQYVKQLEDYIELHQLKVKIFGHRDDIPVLIQAMDAVVLTTECETFGLIMIEAMMAG VVAIGSNSGGVPEIIDHLENGLLFNVFDPQDLSKQIQLLDLSSELKEKLALKGQQKALQRFEKKKQFLAFKEKLLNLEE >Mature_399_residues MQLFKVGSQLRPVSSYIPKMFFQTGKVYVYTLIMSGLNMNILELCLSDSLGGLELHFRDFSVWLDEQQSSEGRIFVATRS ETPLASRMESDLCLTNRNLWHAARLSKFISANKIDVVHIHDKKDLPLLALVKSICSYPFKLAHTRHMSLPGGKRDFYHSW LYGKVDAYFVITEWMKSQVINNLPLAPEKIHKINLGTAVVERCSETELSELKDNIFSEHQGLWLANIARIQHGKGQHVFL DAIKQLKDKGIQVAGVIAGGTDDPQYVKQLEDYIELHQLKVKIFGHRDDIPVLIQAMDAVVLTTECETFGLIMIEAMMAG VVAIGSNSGGVPEIIDHLENGLLFNVFDPQDLSKQIQLLDLSSELKEKLALKGQQKALQRFEKKKQFLAFKEKLLNLEE
Specific function: Slime polysaccharide colanic acid biosynthesis. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 2.-.-.- [C]
Molecular weight: Translated: 45166; Mature: 45166
Theoretical pI: Translated: 7.04; Mature: 7.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQLFKVGSQLRPVSSYIPKMFFQTGKVYVYTLIMSGLNMNILELCLSDSLGGLELHFRDF CCHHHCCCCCCHHHHHHHHHHHHCCCHHEEEHHHCCCCHHHHHHHHHCCCCCEEEEEEEE SVWLDEQQSSEGRIFVATRSETPLASRMESDLCLTNRNLWHAARLSKFISANKIDVVHIH EEEECCCCCCCCEEEEEECCCCCHHHHHCCCCEECCCCHHHHHHHHHHHCCCCEEEEEEC DKKDLPLLALVKSICSYPFKLAHTRHMSLPGGKRDFYHSWLYGKVDAYFVITEWMKSQVI CCCCCCHHHHHHHHHCCCCHHHCEEECCCCCCCHHHHHHHHHCCCCCEEHHHHHHHHHHH NNLPLAPEKIHKINLGTAVVERCSETELSELKDNIFSEHQGLWLANIARIQHGKGQHVFL HCCCCCHHHHHEECCHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHH DAIKQLKDKGIQVAGVIAGGTDDPQYVKQLEDYIELHQLKVKIFGHRDDIPVLIQAMDAV HHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHE VLTTECETFGLIMIEAMMAGVVAIGSNSGGVPEIIDHLENGLLFNVFDPQDLSKQIQLLD EEEECCCHHHHHHHHHHHHCEEEECCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHH LSSELKEKLALKGQQKALQRFEKKKQFLAFKEKLLNLEE HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MQLFKVGSQLRPVSSYIPKMFFQTGKVYVYTLIMSGLNMNILELCLSDSLGGLELHFRDF CCHHHCCCCCCHHHHHHHHHHHHCCCHHEEEHHHCCCCHHHHHHHHHCCCCCEEEEEEEE SVWLDEQQSSEGRIFVATRSETPLASRMESDLCLTNRNLWHAARLSKFISANKIDVVHIH EEEECCCCCCCCEEEEEECCCCCHHHHHCCCCEECCCCHHHHHHHHHHHCCCCEEEEEEC DKKDLPLLALVKSICSYPFKLAHTRHMSLPGGKRDFYHSWLYGKVDAYFVITEWMKSQVI CCCCCCHHHHHHHHHCCCCHHHCEEECCCCCCCHHHHHHHHHCCCCCEEHHHHHHHHHHH NNLPLAPEKIHKINLGTAVVERCSETELSELKDNIFSEHQGLWLANIARIQHGKGQHVFL HCCCCCHHHHHEECCHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHH DAIKQLKDKGIQVAGVIAGGTDDPQYVKQLEDYIELHQLKVKIFGHRDDIPVLIQAMDAV HHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHE VLTTECETFGLIMIEAMMAGVVAIGSNSGGVPEIIDHLENGLLFNVFDPQDLSKQIQLLD EEEECCCHHHHHHHHHHHHCEEEECCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHH LSSELKEKLALKGQQKALQRFEKKKQFLAFKEKLLNLEE HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA