Click here to switch to the map view.

The map label for this gene is ygaU [H]

Identifier: 119900059

GI number: 119900059

Start: 4131244

End: 4131738

Strand: Direct

Name: ygaU [H]

Synonym: azo3770

Alternate gene names: 119900059

Gene position: 4131244-4131738 (Clockwise)

Preceding gene: 119900058

Following gene: 119900060

Centisome position: 94.41

GC content: 67.47

Gene sequence:

>495_bases
ATGAGCCTCATCTCGTTCATCAAGGAAGCCGGTGAAAAGCTCTTCGGGACCGGCGAAGCCAAGGCGCAGGACGCCAGCCC
GGCGGACGGCGACAAGGTCGCCGCGGCCAATACCAAGGCCGCCGACGCGATCAAGCACTACATCTCGACGCTGCAACTGG
CGCCGCCCGATCTGACGGTGAGCTTCGACGGCGCCTCCGGCACCGTCACCGTGGCCGGCACCGCGCCCGACCAGGCCAGC
CGCGAGCGCATCGTGCTGGCGGCCGGCAACGTGCAGGGGGTGAACCAGGTGGACGACAAGCTCACCGTCAGCCAGAGCGA
GCCGGCGGCCACCTTCTACACCGTGGCACGCGGCGACACGCTGTCGGCGATCTCCAAGAAGCACTACGGCGACGCCAACA
AGTACCAGAAGATCTTCGAGGCCAACCGGCCGATGCTCTCCCATCCGGACAAGATCTACCCGGGCCAGGTGTTGCGCATC
CCGCCCGCGGCCTGA

Upstream 100 bases:

>100_bases
TCAGCGCCGCGTTGTCCGCAGCGGGCGCGGTGCTGGACTAACCTGAACCGGGGACAGGGCGCGCGCCCGACTCCGACCTT
CATCGCACAGGGAGAAACGC

Downstream 100 bases:

>100_bases
CGGCGCGGCGCCGCGATTCCCCTGCGCATATGCGGCGGGAATCGCGGCTTGTAGGCCGCGGTTGCGGGCGCTAACCTTGA
CCCCCATCCCGACCCCACCC

Product: LysM domain/BON superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 163

Protein sequence:

>164_residues
MSLISFIKEAGEKLFGTGEAKAQDASPADGDKVAAANTKAADAIKHYISTLQLAPPDLTVSFDGASGTVTVAGTAPDQAS
RERIVLAAGNVQGVNQVDDKLTVSQSEPAATFYTVARGDTLSAISKKHYGDANKYQKIFEANRPMLSHPDKIYPGQVLRI
PPAA

Sequences:

>Translated_164_residues
MSLISFIKEAGEKLFGTGEAKAQDASPADGDKVAAANTKAADAIKHYISTLQLAPPDLTVSFDGASGTVTVAGTAPDQAS
RERIVLAAGNVQGVNQVDDKLTVSQSEPAATFYTVARGDTLSAISKKHYGDANKYQKIFEANRPMLSHPDKIYPGQVLRI
PPAA
>Mature_163_residues
SLISFIKEAGEKLFGTGEAKAQDASPADGDKVAAANTKAADAIKHYISTLQLAPPDLTVSFDGASGTVTVAGTAPDQASR
ERIVLAAGNVQGVNQVDDKLTVSQSEPAATFYTVARGDTLSAISKKHYGDANKYQKIFEANRPMLSHPDKIYPGQVLRIP
PAA

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789019, Length=161, Percent_Identity=44.7204968944099, Blast_Score=130, Evalue=5e-32,

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR007055
- InterPro:   IPR014004 [H]

Pfam domain/function: PF04972 BON; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 17215; Mature: 17084

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50914 BON

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLISFIKEAGEKLFGTGEAKAQDASPADGDKVAAANTKAADAIKHYISTLQLAPPDLTV
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCEEE
SFDGASGTVTVAGTAPDQASRERIVLAAGNVQGVNQVDDKLTVSQSEPAATFYTVARGDT
EECCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCEEEEEEECCCH
LSAISKKHYGDANKYQKIFEANRPMLSHPDKIYPGQVLRIPPAA
HHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCC
>Mature Secondary Structure 
SLISFIKEAGEKLFGTGEAKAQDASPADGDKVAAANTKAADAIKHYISTLQLAPPDLTV
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCEEE
SFDGASGTVTVAGTAPDQASRERIVLAAGNVQGVNQVDDKLTVSQSEPAATFYTVARGDT
EECCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCEEEEEEECCCH
LSAISKKHYGDANKYQKIFEANRPMLSHPDKIYPGQVLRIPPAA
HHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]