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The map label for this gene is speF [H]

Identifier: 119776466

GI number: 119776466

Start: 3960625

End: 3962787

Strand: Direct

Name: speF [H]

Synonym: Sama_3334

Alternate gene names: 119776466

Gene position: 3960625-3962787 (Clockwise)

Preceding gene: 119776465

Following gene: 119776467

Centisome position: 91.98

GC content: 55.02

Gene sequence:

>2163_bases
ATGAATTCGTTAAAAATTGCCGCCAGTTTATCTGTTCGCGCCTGTTTTGATACCAAACGGGAAGTCGTCAACGTATTAAC
CACTGACTTTTGCGATGTGGGTGCCGCCGTTGTTTCTGTTACTGATGTAAATAACGGCATTGTCGACAAAATTAAAAATA
CCGGTTTGAATTTACCGATATTTGTTTCTGTATGCTGTGAAGAAGCTTTCCCCGATGATTTTTGCGATACCATCACCGGG
GTATTCGAACTCTGTAATGCCAAAACTGACTTTTATGGCAAACAGGTCGAAACCGCGGTGCGTCGCTATCAGGAATCCCT
GCTGCCCCCCTTCTTCGGTACCCTGAAAAAGTACGTTGAAATGGGTAACTCCACCTTTGCCTGTCCGGGGCACCAGGGTG
GTCAGTTCTTCCGTAAACACCCCGTTGGCCGTCAGTTCTTTGATTTCTTCGGCGAAACTGTGTTCCGCTCGGACATGTGC
AATGCCGACGTGAAGCTGGGTGACCTGCTCATACACGAAGGCGCACCCCACGATGCCCAAGCCTATGCGGCCAAGGTGTA
TAACGCCGACAAAACCTACTTTGTACTGAACGGCACTTCCGCCTCCAACAAGGTGGTGTGTAACGCCCTGCTCGCCCCCG
GCGATCTGGTACTGTTTGACCGCAACAACCACAAATCCAACCACCACGGCGCCCTCATTCAGGCCGGTGCCACTCCCGTG
TATCTGGAAACGGCCCGCAACCCCTTCGGTTTTATCGGTGGTATAGACTCCCACTGCTTTGATGAAGCTTACCTGCGGGA
CGAAATCGGTAAGGTTGCCCCTGAGCGGGTACAGGCAGCGCGCCCATTCCGCCTTGCCATCATCCAGCTTGGCACCTATG
ACGGCACCATATACAACGCCCGTCAGGTGGTGGACCGCATTGGCCACCTGTGTGACTACATCCTGTTTGACTCTGCCTGG
GTAGGCTACGAGCAATTCATCCCCATGATGAAAGACTGCTCGCCGCTGCTGCTGGAACTCGGCGCCGAAGACCCGGGTAT
TATCGTCACCCAGTCGGTGCACAAACAGCAGGCCGGGTTTTCGCAAACCTCACAAATCCACAAAAAAGACAGCCATATCA
AGGGACAGGAACGCTACTGCAACCATAAACGCTTTAACAACGCCTTTATGATGCACGCCTCCACCAGCCCCTTCTATCCG
CTGTTTGCAGCACTGGATGTGAACGCCAAGATGCACGAAGGCGCCAGCGGCCGTTACCTGTGGCGCGAGGCAGTGAAGGC
CGGTATCGAAGCCCGCAAGTTGCTGCTTAAAAAGTGCAAGTACATCAAGCCCTTTATCCCCACCACAGTGGAAGGCGAGC
CCTGGCAGAGCTTTGATACCGAGCGAATGGCCGACGATCTGCGCTTCTTCGAGTTCGAACCGGGCCTTAAATGGCACGCG
TTCGATGGCTACGAGAAGGGCCAGTATTTTGTCGACCCCTGTAAGTTCCTGCTCACCACCCCCGGCATCAACGCCGAAAC
CGGCGAGTACGAAGACTTCGGTATCCCGGCCACCATCCTTGCAAACTTCCTTCGTGAAAACAACATCATACCGGAGAAGT
GCGACCTTAACTCCATCCTGTTCCTCATGACCCCCGCCGAGGACATGGCCAAGATGCAGCATCTGGTGACCCAGATTGCC
CGCTTCGAGAAGCTGATTGACGAAGATGCACCTTTAAGTGAAGTGCTGCCCAACGTCTATCGCACCAATCGCGAGCGTTA
TGAAGGCTACAGCATCCGTCGCCTGTGTCAGGAAATGCACGACCTCTATGTCAGCCGTAACGTGAAACAGCTGCAAAAAG
AGATGTTCCGTGCTGCCCATTTTCCCAAGGCGGTGATGAATCCACAGGACGCCAATATCGCCTTTGTGCGCGGCAAGGCC
GAGCTGGTGCCCCTCAGTGAAATCGAAGGCCAGATCGCGGCCGAAGGCGCCCTGCCTTATCCACCCGGCGTGCTCTGTAT
GGTGCCGGGGGAAGTCTGGGGCGGCGCGGTGCAGCGCTATTTCCTGGCCCTCGAAGAAGGCATCAACCTGCTGCCGGGCT
TCGCCCCCGAACTGCAGGGTGTGTACCTGGAGCGCGCCGATAATGGCCGGGTTCAGGCTATGGGTTACGTCCTCAAACGC
TGA

Upstream 100 bases:

>100_bases
GCCCTTATTTGTCAGCACCCGTTCGGCTGCCCGGAATTTACCATGTCGATTTAATAAATATTGACAGGGGTCCGGCTAAC
CAAAATTAATCAGGTTAATT

Downstream 100 bases:

>100_bases
TCAACGCGGGGCGGCAAGGGTACGCCGCCCCCTAAAACCATAACGAATCGAGACACTATTATGAGTAAATCAAACAACAA
GATAGGCGTGGTTCAACTCA

Product: ornithine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 720; Mature: 720

Protein sequence:

>720_residues
MNSLKIAASLSVRACFDTKREVVNVLTTDFCDVGAAVVSVTDVNNGIVDKIKNTGLNLPIFVSVCCEEAFPDDFCDTITG
VFELCNAKTDFYGKQVETAVRRYQESLLPPFFGTLKKYVEMGNSTFACPGHQGGQFFRKHPVGRQFFDFFGETVFRSDMC
NADVKLGDLLIHEGAPHDAQAYAAKVYNADKTYFVLNGTSASNKVVCNALLAPGDLVLFDRNNHKSNHHGALIQAGATPV
YLETARNPFGFIGGIDSHCFDEAYLRDEIGKVAPERVQAARPFRLAIIQLGTYDGTIYNARQVVDRIGHLCDYILFDSAW
VGYEQFIPMMKDCSPLLLELGAEDPGIIVTQSVHKQQAGFSQTSQIHKKDSHIKGQERYCNHKRFNNAFMMHASTSPFYP
LFAALDVNAKMHEGASGRYLWREAVKAGIEARKLLLKKCKYIKPFIPTTVEGEPWQSFDTERMADDLRFFEFEPGLKWHA
FDGYEKGQYFVDPCKFLLTTPGINAETGEYEDFGIPATILANFLRENNIIPEKCDLNSILFLMTPAEDMAKMQHLVTQIA
RFEKLIDEDAPLSEVLPNVYRTNRERYEGYSIRRLCQEMHDLYVSRNVKQLQKEMFRAAHFPKAVMNPQDANIAFVRGKA
ELVPLSEIEGQIAAEGALPYPPGVLCMVPGEVWGGAVQRYFLALEEGINLLPGFAPELQGVYLERADNGRVQAMGYVLKR

Sequences:

>Translated_720_residues
MNSLKIAASLSVRACFDTKREVVNVLTTDFCDVGAAVVSVTDVNNGIVDKIKNTGLNLPIFVSVCCEEAFPDDFCDTITG
VFELCNAKTDFYGKQVETAVRRYQESLLPPFFGTLKKYVEMGNSTFACPGHQGGQFFRKHPVGRQFFDFFGETVFRSDMC
NADVKLGDLLIHEGAPHDAQAYAAKVYNADKTYFVLNGTSASNKVVCNALLAPGDLVLFDRNNHKSNHHGALIQAGATPV
YLETARNPFGFIGGIDSHCFDEAYLRDEIGKVAPERVQAARPFRLAIIQLGTYDGTIYNARQVVDRIGHLCDYILFDSAW
VGYEQFIPMMKDCSPLLLELGAEDPGIIVTQSVHKQQAGFSQTSQIHKKDSHIKGQERYCNHKRFNNAFMMHASTSPFYP
LFAALDVNAKMHEGASGRYLWREAVKAGIEARKLLLKKCKYIKPFIPTTVEGEPWQSFDTERMADDLRFFEFEPGLKWHA
FDGYEKGQYFVDPCKFLLTTPGINAETGEYEDFGIPATILANFLRENNIIPEKCDLNSILFLMTPAEDMAKMQHLVTQIA
RFEKLIDEDAPLSEVLPNVYRTNRERYEGYSIRRLCQEMHDLYVSRNVKQLQKEMFRAAHFPKAVMNPQDANIAFVRGKA
ELVPLSEIEGQIAAEGALPYPPGVLCMVPGEVWGGAVQRYFLALEEGINLLPGFAPELQGVYLERADNGRVQAMGYVLKR
>Mature_720_residues
MNSLKIAASLSVRACFDTKREVVNVLTTDFCDVGAAVVSVTDVNNGIVDKIKNTGLNLPIFVSVCCEEAFPDDFCDTITG
VFELCNAKTDFYGKQVETAVRRYQESLLPPFFGTLKKYVEMGNSTFACPGHQGGQFFRKHPVGRQFFDFFGETVFRSDMC
NADVKLGDLLIHEGAPHDAQAYAAKVYNADKTYFVLNGTSASNKVVCNALLAPGDLVLFDRNNHKSNHHGALIQAGATPV
YLETARNPFGFIGGIDSHCFDEAYLRDEIGKVAPERVQAARPFRLAIIQLGTYDGTIYNARQVVDRIGHLCDYILFDSAW
VGYEQFIPMMKDCSPLLLELGAEDPGIIVTQSVHKQQAGFSQTSQIHKKDSHIKGQERYCNHKRFNNAFMMHASTSPFYP
LFAALDVNAKMHEGASGRYLWREAVKAGIEARKLLLKKCKYIKPFIPTTVEGEPWQSFDTERMADDLRFFEFEPGLKWHA
FDGYEKGQYFVDPCKFLLTTPGINAETGEYEDFGIPATILANFLRENNIIPEKCDLNSILFLMTPAEDMAKMQHLVTQIA
RFEKLIDEDAPLSEVLPNVYRTNRERYEGYSIRRLCQEMHDLYVSRNVKQLQKEMFRAAHFPKAVMNPQDANIAFVRGKA
ELVPLSEIEGQIAAEGALPYPPGVLCMVPGEVWGGAVQRYFLALEEGINLLPGFAPELQGVYLERADNGRVQAMGYVLKR

Specific function: Spermidine biosynthesis from ornithine. [C]

COG id: COG1982

COG function: function code E; Arginine/lysine/ornithine decarboxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Orn/Lys/Arg decarboxylase class-I family [H]

Homologues:

Organism=Escherichia coli, GI1786909, Length=719, Percent_Identity=69.6801112656467, Blast_Score=1084, Evalue=0.0,
Organism=Escherichia coli, GI87082193, Length=719, Percent_Identity=67.5938803894298, Blast_Score=1026, Evalue=0.0,
Organism=Escherichia coli, GI221142684, Length=676, Percent_Identity=30.9171597633136, Blast_Score=335, Evalue=5e-93,
Organism=Escherichia coli, GI1790573, Length=679, Percent_Identity=33.8733431516937, Blast_Score=333, Evalue=2e-92,
Organism=Escherichia coli, GI1786384, Length=635, Percent_Identity=33.0708661417323, Blast_Score=309, Evalue=3e-85,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR005308
- InterPro:   IPR011193
- InterPro:   IPR000310
- InterPro:   IPR008286
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01276 OKR_DC_1; PF03711 OKR_DC_1_C; PF03709 OKR_DC_1_N [H]

EC number: =4.1.1.17 [H]

Molecular weight: Translated: 80782; Mature: 80782

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: PS00703 OKR_DC_1 ; PS00196 COPPER_BLUE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSLKIAASLSVRACFDTKREVVNVLTTDFCDVGAAVVSVTDVNNGIVDKIKNTGLNLPI
CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCHHEEEEECCCCCHHHHHHHCCCCCHH
FVSVCCEEAFPDDFCDTITGVFELCNAKTDFYGKQVETAVRRYQESLLPPFFGTLKKYVE
HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
MGNSTFACPGHQGGQFFRKHPVGRQFFDFFGETVFRSDMCNADVKLGDLLIHEGAPHDAQ
CCCCEEECCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEECCEEEECCCCCCHH
AYAAKVYNADKTYFVLNGTSASNKVVCNALLAPGDLVLFDRNNHKSNHHGALIQAGATPV
HHHHHHCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCEEECCCCEE
YLETARNPFGFIGGIDSHCFDEAYLRDEIGKVAPERVQAARPFRLAIIQLGTYDGTIYNA
EEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCEEEEEEEEECCCCCHHHH
RQVVDRIGHLCDYILFDSAWVGYEQFIPMMKDCSPLLLELGAEDPGIIVTQSVHKQQAGF
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCEEEECHHHHHHCCC
SQTSQIHKKDSHIKGQERYCNHKRFNNAFMMHASTSPFYPLFAALDVNAKMHEGASGRYL
HHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEECCCCCCCEEEEEECCCHHCCCCCCCHH
WREAVKAGIEARKLLLKKCKYIKPFIPTTVEGEPWQSFDTERMADDLRFFEFEPGLKWHA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHEEEECCCCEEEE
FDGYEKGQYFVDPCKFLLTTPGINAETGEYEDFGIPATILANFLRENNIIPEKCDLNSIL
CCCCCCCCEEECCHHHHEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEE
FLMTPAEDMAKMQHLVTQIARFEKLIDEDAPLSEVLPNVYRTNRERYEGYSIRRLCQEMH
EEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHCCHHHHHHHHHHH
DLYVSRNVKQLQKEMFRAAHFPKAVMNPQDANIAFVRGKAELVPLSEIEGQIAAEGALPY
HHHHHCCHHHHHHHHHHHHCCCHHHCCCCCCCEEEEECCCCEEEHHHHCCCEEECCCCCC
PPGVLCMVPGEVWGGAVQRYFLALEEGINLLPGFAPELQGVYLERADNGRVQAMGYVLKR
CCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEEEHHHHHCC
>Mature Secondary Structure
MNSLKIAASLSVRACFDTKREVVNVLTTDFCDVGAAVVSVTDVNNGIVDKIKNTGLNLPI
CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCHHEEEEECCCCCHHHHHHHCCCCCHH
FVSVCCEEAFPDDFCDTITGVFELCNAKTDFYGKQVETAVRRYQESLLPPFFGTLKKYVE
HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
MGNSTFACPGHQGGQFFRKHPVGRQFFDFFGETVFRSDMCNADVKLGDLLIHEGAPHDAQ
CCCCEEECCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEECCEEEECCCCCCHH
AYAAKVYNADKTYFVLNGTSASNKVVCNALLAPGDLVLFDRNNHKSNHHGALIQAGATPV
HHHHHHCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCEEECCCCEE
YLETARNPFGFIGGIDSHCFDEAYLRDEIGKVAPERVQAARPFRLAIIQLGTYDGTIYNA
EEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCEEEEEEEEECCCCCHHHH
RQVVDRIGHLCDYILFDSAWVGYEQFIPMMKDCSPLLLELGAEDPGIIVTQSVHKQQAGF
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCEEEECHHHHHHCCC
SQTSQIHKKDSHIKGQERYCNHKRFNNAFMMHASTSPFYPLFAALDVNAKMHEGASGRYL
HHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEECCCCCCCEEEEEECCCHHCCCCCCCHH
WREAVKAGIEARKLLLKKCKYIKPFIPTTVEGEPWQSFDTERMADDLRFFEFEPGLKWHA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHEEEECCCCEEEE
FDGYEKGQYFVDPCKFLLTTPGINAETGEYEDFGIPATILANFLRENNIIPEKCDLNSIL
CCCCCCCCEEECCHHHHEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEE
FLMTPAEDMAKMQHLVTQIARFEKLIDEDAPLSEVLPNVYRTNRERYEGYSIRRLCQEMH
EEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHCCHHHHHHHHHHH
DLYVSRNVKQLQKEMFRAAHFPKAVMNPQDANIAFVRGKAELVPLSEIEGQIAAEGALPY
HHHHHCCHHHHHHHHHHHHCCCHHHCCCCCCCEEEEECCCCEEEHHHHCCCEEECCCCCC
PPGVLCMVPGEVWGGAVQRYFLALEEGINLLPGFAPELQGVYLERADNGRVQAMGYVLKR
CCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEEEHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1939141; 8905232; 9278503 [H]