Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
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Accession | NC_008700 |
Length | 4,306,142 |
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The map label for this gene is 119776395
Identifier: 119776395
GI number: 119776395
Start: 3871566
End: 3872273
Strand: Direct
Name: 119776395
Synonym: Sama_3263
Alternate gene names: NA
Gene position: 3871566-3872273 (Clockwise)
Preceding gene: 119776394
Following gene: 119776396
Centisome position: 89.91
GC content: 50.71
Gene sequence:
>708_bases ATGAAAGGCGGACAAACGTTTACCCAAACAATGCTTAAGGTCTGCCAACACAGCCTGTTGGCAACGGCCATATTGGGAAC TTGTCTGTTTGCCCAGTCCAGTACACAGCTGGACAGGAGCAAAATCGTTTCCACTCTGGAGAGCAAATATGGCCCCAGGG CCGGGAAGCGCGCCAATGCTTGGTTTCAAGTGGTTGACTCGGCCCAAGGGCTGAGCGAAATGGAAAAGCTGACGAAGGTG AACACTTTTTTTAATCTGTTCACCTTCGTCGACGACATTAAATTGTGGGGCGATTCCAACTATTGGGCAACACCCATGGA GTTTATCGGGGTTGCCGGTGGCGATTGTGAGGACTTTTCCATCGCCAAGTATTTTACCCTGCTGCAACTCGGTATACCGG ACGAGAAGCTCAGGATCACCATGGTAAAGGCAACCTCAGTCAATCAATACCACATGGTGCTGGCCTACTACGAAACACCG GGGTCCGTACCACTGGTACTCGATAATCTGGATAAGCAAATCAAGCCGGCAACAGCCAGGCGAGATCTGCTGCCTGTTTA TAGTTTTAACGGTAAACAACTGTGGTTAAACAAAGAAAAGGGACGGGGTGTGCTCGCGGGCTCTTCCTCGCGGCTGGAAA AATGGACCGATTTGACCCACAGACTAGGGGTTGAACGGCTCAGGCAACCCAAGATGAGATTGGAGTAA
Upstream 100 bases:
>100_bases CGGGTAATCGCGGAGATTGTTGGAGACGACACTACTGCCGACATGAAGTGGAACATATATACTGTCGACCAGGAAGTGAA ATAACATTTGAATCAATAGC
Downstream 100 bases:
>100_bases CTAACGATATGACACTGTTTCGACAGCTGTATTCGCTATTGTTTGGTCTGTTTTTATTGGTAATCACCGCCTTGGCTTAT GTGCAATTCACAGAAACCAA
Product: hypothetical protein
Products: NA
Alternate protein names: Transglutaminase Family Protein Cysteine Peptidase BTLCP; Periplasmic Protein-Like Protein; Sulfate Adenylyltransferase Small Subunit; Transglutaminase Domain Protein; OmpA/MotB; Sulfate Adenylyltransferase; Lipoprotein
Number of amino acids: Translated: 235; Mature: 235
Protein sequence:
>235_residues MKGGQTFTQTMLKVCQHSLLATAILGTCLFAQSSTQLDRSKIVSTLESKYGPRAGKRANAWFQVVDSAQGLSEMEKLTKV NTFFNLFTFVDDIKLWGDSNYWATPMEFIGVAGGDCEDFSIAKYFTLLQLGIPDEKLRITMVKATSVNQYHMVLAYYETP GSVPLVLDNLDKQIKPATARRDLLPVYSFNGKQLWLNKEKGRGVLAGSSSRLEKWTDLTHRLGVERLRQPKMRLE
Sequences:
>Translated_235_residues MKGGQTFTQTMLKVCQHSLLATAILGTCLFAQSSTQLDRSKIVSTLESKYGPRAGKRANAWFQVVDSAQGLSEMEKLTKV NTFFNLFTFVDDIKLWGDSNYWATPMEFIGVAGGDCEDFSIAKYFTLLQLGIPDEKLRITMVKATSVNQYHMVLAYYETP GSVPLVLDNLDKQIKPATARRDLLPVYSFNGKQLWLNKEKGRGVLAGSSSRLEKWTDLTHRLGVERLRQPKMRLE >Mature_235_residues MKGGQTFTQTMLKVCQHSLLATAILGTCLFAQSSTQLDRSKIVSTLESKYGPRAGKRANAWFQVVDSAQGLSEMEKLTKV NTFFNLFTFVDDIKLWGDSNYWATPMEFIGVAGGDCEDFSIAKYFTLLQLGIPDEKLRITMVKATSVNQYHMVLAYYETP GSVPLVLDNLDKQIKPATARRDLLPVYSFNGKQLWLNKEKGRGVLAGSSSRLEKWTDLTHRLGVERLRQPKMRLE
Specific function: Unknown
COG id: COG3672
COG function: function code S; Predicted periplasmic protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26483; Mature: 26483
Theoretical pI: Translated: 9.69; Mature: 9.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKGGQTFTQTMLKVCQHSLLATAILGTCLFAQSSTQLDRSKIVSTLESKYGPRAGKRANA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHH WFQVVDSAQGLSEMEKLTKVNTFFNLFTFVDDIKLWGDSNYWATPMEFIGVAGGDCEDFS HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHCCCCCCCCCCH IAKYFTLLQLGIPDEKLRITMVKATSVNQYHMVLAYYETPGSVPLVLDNLDKQIKPATAR HHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCEEEECCCCHHCCCCHHH RDLLPVYSFNGKQLWLNKEKGRGVLAGSSSRLEKWTDLTHRLGVERLRQPKMRLE HCCCEEEECCCCEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MKGGQTFTQTMLKVCQHSLLATAILGTCLFAQSSTQLDRSKIVSTLESKYGPRAGKRANA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHH WFQVVDSAQGLSEMEKLTKVNTFFNLFTFVDDIKLWGDSNYWATPMEFIGVAGGDCEDFS HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHCCCCCCCCCCH IAKYFTLLQLGIPDEKLRITMVKATSVNQYHMVLAYYETPGSVPLVLDNLDKQIKPATAR HHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCEEEECCCCHHCCCCHHH RDLLPVYSFNGKQLWLNKEKGRGVLAGSSSRLEKWTDLTHRLGVERLRQPKMRLE HCCCEEEECCCCEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA