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The map label for this gene is yhjK [C]

Identifier: 119776396

GI number: 119776396

Start: 3872282

End: 3874201

Strand: Direct

Name: yhjK [C]

Synonym: Sama_3264

Alternate gene names: 119776396

Gene position: 3872282-3874201 (Clockwise)

Preceding gene: 119776395

Following gene: 119776397

Centisome position: 89.92

GC content: 49.43

Gene sequence:

>1920_bases
ATGACACTGTTTCGACAGCTGTATTCGCTATTGTTTGGTCTGTTTTTATTGGTAATCACCGCCTTGGCTTATGTGCAATT
CACAGAAACCAAGAGCTTTTTAACCAAACAGATGGAGTCAGACCTCAATAACGTCAGCAATTCGCTGGGTTTGTTGCTGG
TCCCGGCCTTGGAAACCGGCGATATCGCCACCGCCGAGACACTCATTAATGTCATCTTCGAAGGTGGTTACTACCAGCAG
GTAAAGCTGACCTGGTTAGTGGATGGTAAACAACAGGAATGGAACAACAGCCTGGAAATCCAGGGCGTTCCCCAGTGGTT
CATTAACCTCGGTATTTTCGGCACCATCAAAAGGGAAAGCACCATCACCTCGGGTTGGCTGCAGTTGGCACAACTGGAAG
TGACTGCTCACCCCGGTTTTGGTTACCACGAACTGTGGCGCATTCTCACCAACACCATCATCGTCTTCTCTATCCTGTTT
TTGGTCGCCATATTCCTCGCTCGCTTTGGCCTCAGCTGGATCTTAAAGCCGCTGCATATAGTCTCTGAGCACGCCAAAAG
CATTGCCAATCGCCAATTCGGTCCAGAGCTTGCCATTCCCAAGACCAGTGAGTTAAAGGAAGTGGTGATTGCGTTTAACA
GCATGTCTTCCCAGCTCAAACAAATCTTCAGCTCACTGGATGAAGAAGTAACCGCCCTGCGCAAAAAGAATCTGGTGGAT
CAGGTGTCTGGTTTGCCCAACCGCCAGTATCTGGTGGGGCGAATTAACAGCTGGCTCTCTGAGCCCGGCAGTGGTGCACT
CTTTATGGCTAAGTTTGACTGGCTTGAAGAGGTACACGCCAAATACGGTTATCAAGTCCGCGACGAAACCATCAAGCTCC
TGTCAGAAAAACTGCAATCCCAACTGGAAGAAATTGCGCCGGGCGTGGTTGCCAGAATTGCCGCGTTTGAGTTTGCATTC
CTGGTATTTGATGTGGATAAAGAACTCATCAGTAAGTACCTGCAAACCCTGATACGCACAGTCAATCAGGAAATCTCAAA
AGCTGGCGGCAAGCCCAACGAGCATTTCGCCATAGGTATTGCTGAACGCATTGGCTCTATGACTGTGTCTGACATACTGG
CGCAATCGGATAATGCGCTGCAAACAGCCATCAAGAGTGGCAAGGTGTATCACTGGTTTGAATCCAGTGAAGAGCAGATG
TTTACCCGAGAGCAATGGCGTGAAAAGCTTTCCAGCGCCATCAACGCCAAACTGTTTCAGTTCCGTTGGCAGCCAATTCA
GCTCACCGACGGCGCAGGCCTGTTGCAGCATGAGCTTTACTGCCAATTGGAAATTGGCGATAAGCTGGCCCATGCCGGAC
AATTTATGCCCTATGTAGAACTGCTTTCACTGGGCGCCTTGCTGGATAAGTGTTTGATCCAGAAAGTGCACGATATACAT
CTGCTGGAGCGGAATTTTGAACCTGTAGCCATTAACCTGACCCATCAGAGCTTAACCGACACTGATTTCCATCAATGGCT
GCAGCAGTTCCTGCGCTCAACCCCATTGGCAGACCGTCTGTGCTTCGATATACCTGAATCCGGGGTCTACAGTAATCCCG
AAGCCTGCGAGGCTCTGTGCGCCATCATCAGGGACAATGGCGCCAAGTTTGGTATTGATCACTTTGGTCGTCAATTTGGT
TCAATGTCTTATCTGCAAACTCTGAGACCCAGCTATGTGAAACTGGATCAATCCTTTGCCTACTATGACGAGAACCAGCA
CAACGCCGAACTGTGCCGTGCCTTGGTCAACGTAGCCCGTGGCTTGGAAATTCAGGTTATTGTCACAGGTATTCAGGAAA
AGCCTCAACTGGATCGCTTTATTCCGCTGAAGACAACAGCATACCAGGGCTTTATTGCTCCACCAGTGAATGTAAGCTGA

Upstream 100 bases:

>100_bases
CGGGCTCTTCCTCGCGGCTGGAAAAATGGACCGATTTGACCCACAGACTAGGGGTTGAACGGCTCAGGCAACCCAAGATG
AGATTGGAGTAACTAACGAT

Downstream 100 bases:

>100_bases
GTTCATCGACACTGACGCTGTACTGAAGGCACCCTTTGCGGTGCCTTTTTATTGCGTCATTGCAAGCCTTGAGTTTGACA
GAATTGCCGCCTACTCATCG

Product: putative diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 639; Mature: 638

Protein sequence:

>639_residues
MTLFRQLYSLLFGLFLLVITALAYVQFTETKSFLTKQMESDLNNVSNSLGLLLVPALETGDIATAETLINVIFEGGYYQQ
VKLTWLVDGKQQEWNNSLEIQGVPQWFINLGIFGTIKRESTITSGWLQLAQLEVTAHPGFGYHELWRILTNTIIVFSILF
LVAIFLARFGLSWILKPLHIVSEHAKSIANRQFGPELAIPKTSELKEVVIAFNSMSSQLKQIFSSLDEEVTALRKKNLVD
QVSGLPNRQYLVGRINSWLSEPGSGALFMAKFDWLEEVHAKYGYQVRDETIKLLSEKLQSQLEEIAPGVVARIAAFEFAF
LVFDVDKELISKYLQTLIRTVNQEISKAGGKPNEHFAIGIAERIGSMTVSDILAQSDNALQTAIKSGKVYHWFESSEEQM
FTREQWREKLSSAINAKLFQFRWQPIQLTDGAGLLQHELYCQLEIGDKLAHAGQFMPYVELLSLGALLDKCLIQKVHDIH
LLERNFEPVAINLTHQSLTDTDFHQWLQQFLRSTPLADRLCFDIPESGVYSNPEACEALCAIIRDNGAKFGIDHFGRQFG
SMSYLQTLRPSYVKLDQSFAYYDENQHNAELCRALVNVARGLEIQVIVTGIQEKPQLDRFIPLKTTAYQGFIAPPVNVS

Sequences:

>Translated_639_residues
MTLFRQLYSLLFGLFLLVITALAYVQFTETKSFLTKQMESDLNNVSNSLGLLLVPALETGDIATAETLINVIFEGGYYQQ
VKLTWLVDGKQQEWNNSLEIQGVPQWFINLGIFGTIKRESTITSGWLQLAQLEVTAHPGFGYHELWRILTNTIIVFSILF
LVAIFLARFGLSWILKPLHIVSEHAKSIANRQFGPELAIPKTSELKEVVIAFNSMSSQLKQIFSSLDEEVTALRKKNLVD
QVSGLPNRQYLVGRINSWLSEPGSGALFMAKFDWLEEVHAKYGYQVRDETIKLLSEKLQSQLEEIAPGVVARIAAFEFAF
LVFDVDKELISKYLQTLIRTVNQEISKAGGKPNEHFAIGIAERIGSMTVSDILAQSDNALQTAIKSGKVYHWFESSEEQM
FTREQWREKLSSAINAKLFQFRWQPIQLTDGAGLLQHELYCQLEIGDKLAHAGQFMPYVELLSLGALLDKCLIQKVHDIH
LLERNFEPVAINLTHQSLTDTDFHQWLQQFLRSTPLADRLCFDIPESGVYSNPEACEALCAIIRDNGAKFGIDHFGRQFG
SMSYLQTLRPSYVKLDQSFAYYDENQHNAELCRALVNVARGLEIQVIVTGIQEKPQLDRFIPLKTTAYQGFIAPPVNVS
>Mature_638_residues
TLFRQLYSLLFGLFLLVITALAYVQFTETKSFLTKQMESDLNNVSNSLGLLLVPALETGDIATAETLINVIFEGGYYQQV
KLTWLVDGKQQEWNNSLEIQGVPQWFINLGIFGTIKRESTITSGWLQLAQLEVTAHPGFGYHELWRILTNTIIVFSILFL
VAIFLARFGLSWILKPLHIVSEHAKSIANRQFGPELAIPKTSELKEVVIAFNSMSSQLKQIFSSLDEEVTALRKKNLVDQ
VSGLPNRQYLVGRINSWLSEPGSGALFMAKFDWLEEVHAKYGYQVRDETIKLLSEKLQSQLEEIAPGVVARIAAFEFAFL
VFDVDKELISKYLQTLIRTVNQEISKAGGKPNEHFAIGIAERIGSMTVSDILAQSDNALQTAIKSGKVYHWFESSEEQMF
TREQWREKLSSAINAKLFQFRWQPIQLTDGAGLLQHELYCQLEIGDKLAHAGQFMPYVELLSLGALLDKCLIQKVHDIHL
LERNFEPVAINLTHQSLTDTDFHQWLQQFLRSTPLADRLCFDIPESGVYSNPEACEALCAIIRDNGAKFGIDHFGRQFGS
MSYLQTLRPSYVKLDQSFAYYDENQHNAELCRALVNVARGLEIQVIVTGIQEKPQLDRFIPLKTTAYQGFIAPPVNVS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI226510982, Length=626, Percent_Identity=20.4472843450479, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1789650, Length=523, Percent_Identity=20.0764818355641, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 72315; Mature: 72184

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: PS50885 HAMP ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLFRQLYSLLFGLFLLVITALAYVQFTETKSFLTKQMESDLNNVSNSLGLLLVPALETG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
DIATAETLINVIFEGGYYQQVKLTWLVDGKQQEWNNSLEIQGVPQWFINLGIFGTIKRES
CCHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHCCCCEEECCCHHHHHHCCCEEEECCCC
TITSGWLQLAQLEVTAHPGFGYHELWRILTNTIIVFSILFLVAIFLARFGLSWILKPLHI
HHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
VSEHAKSIANRQFGPELAIPKTSELKEVVIAFNSMSSQLKQIFSSLDEEVTALRKKNLVD
HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QVSGLPNRQYLVGRINSWLSEPGSGALFMAKFDWLEEVHAKYGYQVRDETIKLLSEKLQS
HHHCCCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
QLEEIAPGVVARIAAFEFAFLVFDVDKELISKYLQTLIRTVNQEISKAGGKPNEHFAIGI
HHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEH
AERIGSMTVSDILAQSDNALQTAIKSGKVYHWFESSEEQMFTREQWREKLSSAINAKLFQ
HHHHCCHHHHHHHHCCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
FRWQPIQLTDGAGLLQHELYCQLEIGDKLAHAGQFMPYVELLSLGALLDKCLIQKVHDIH
EECCEEEEECCCCHHHHHHEEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LLERNFEPVAINLTHQSLTDTDFHQWLQQFLRSTPLADRLCFDIPESGVYSNPEACEALC
HHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCHHHHHHHH
AIIRDNGAKFGIDHFGRQFGSMSYLQTLRPSYVKLDQSFAYYDENQHNAELCRALVNVAR
HHHHCCCCEECHHHHHHHHCCHHHHHHHCCHHHHHCCCHHHCCCCCCHHHHHHHHHHHHC
GLEIQVIVTGIQEKPQLDRFIPLKTTAYQGFIAPPVNVS
CCEEEEEEECCCCCCCCCCCCCCEECCCCCEECCCCCCC
>Mature Secondary Structure 
TLFRQLYSLLFGLFLLVITALAYVQFTETKSFLTKQMESDLNNVSNSLGLLLVPALETG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
DIATAETLINVIFEGGYYQQVKLTWLVDGKQQEWNNSLEIQGVPQWFINLGIFGTIKRES
CCHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHCCCCEEECCCHHHHHHCCCEEEECCCC
TITSGWLQLAQLEVTAHPGFGYHELWRILTNTIIVFSILFLVAIFLARFGLSWILKPLHI
HHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
VSEHAKSIANRQFGPELAIPKTSELKEVVIAFNSMSSQLKQIFSSLDEEVTALRKKNLVD
HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QVSGLPNRQYLVGRINSWLSEPGSGALFMAKFDWLEEVHAKYGYQVRDETIKLLSEKLQS
HHHCCCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
QLEEIAPGVVARIAAFEFAFLVFDVDKELISKYLQTLIRTVNQEISKAGGKPNEHFAIGI
HHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEH
AERIGSMTVSDILAQSDNALQTAIKSGKVYHWFESSEEQMFTREQWREKLSSAINAKLFQ
HHHHCCHHHHHHHHCCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
FRWQPIQLTDGAGLLQHELYCQLEIGDKLAHAGQFMPYVELLSLGALLDKCLIQKVHDIH
EECCEEEEECCCCHHHHHHEEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LLERNFEPVAINLTHQSLTDTDFHQWLQQFLRSTPLADRLCFDIPESGVYSNPEACEALC
HHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCHHHHHHHH
AIIRDNGAKFGIDHFGRQFGSMSYLQTLRPSYVKLDQSFAYYDENQHNAELCRALVNVAR
HHHHCCCCEECHHHHHHHHCCHHHHHHHCCHHHHHCCCHHHCCCCCCHHHHHHHHHHHHC
GLEIQVIVTGIQEKPQLDRFIPLKTTAYQGFIAPPVNVS
CCEEEEEEECCCCCCCCCCCCCCEECCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]