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The map label for this gene is yaaJ [C]

Identifier: 119776085

GI number: 119776085

Start: 3514745

End: 3516139

Strand: Reverse

Name: yaaJ [C]

Synonym: Sama_2953

Alternate gene names: 119776085

Gene position: 3516139-3514745 (Counterclockwise)

Preceding gene: 119776093

Following gene: 119776084

Centisome position: 81.65

GC content: 59.5

Gene sequence:

>1395_bases
ATGGATTTTCACGCACTGCTGACGCAGTTGAACGCTATTGTTTGGGGTCCTGTGACCCTGTGTTTGTTGGTGGGTACCGG
TGTGTACTTCACCGTTCGTTTAAAGCTGTTGCAGCTGGTCAAATTACCCCTCGCCCTGTCACTGCTCTTTAAACCCGCCT
CAGGGAAGGGGGAGCTGTCGTCCTTTGGGGCGCTTTGCACCGCACTCTCGGCCACCATAGGCACGGGCAACATAGTGGGG
GTCGCCACCGCCATCAAGCTCGGTGGCCCGGGTGCGCTGTTTTGGATGTGGGTGGCGGCCTTTTTTGGCATGGCCACCAA
ATACGCCGAGTGTTTGCTGGCGCTCAAATACCGCACCACCGACGCCAGGGGCAATATCGCCGGTGGCCCCATGTATTACA
TTGAACGCGGACTTGGCCTGGGCTGGCTCGCCAGGCTCTTTGCCATTTTCGGGGTAGGTGTGGCCTTTTTCGGTATAGGT
ACCTTCGCCCAGGTCAATGCCATCAGCGATGCCATGACGGTGGCCTTTGCCGTGCCCACCTGGGTGACTGCCAGCGTGCT
GACCCTGCTGGTGGCGGCCGTGACGTTAGGCGGCGTTAAGCGCATCGCTTCGGTTGCCCAAACTCTGGTGCCCGCCATGG
CCATCGGCTATGTGCTGGCTTGCCTTTGGGTACTGCTGAGTCTCCATGACGCCATAGTGCCGGCCCTTTCTTTGGTGGTG
AATGGGGCCTTTACCCCGGTTGCCGCCGGGGGCGGCTTTTTGGGGGCGACTGTGGCGCTGGCGATTCAAACCGGTATCGC
CCGTGGGGTATTCTCCAACGAGTCCGGCCTTGGCAGCGCACCCATTGCGGCGGCAACTGCACGCACCAAAGAGCCGGTGG
AGCAGGGGCTGGTGAGCATGACTGGCACCTTTTTCGATACCCTGATTATCTGCACCATGACAGGATTGGTGCTTATCATC
ACTGGTGTATGGAGTGGCGACAGCGCCGGAGCAGCCATGACCAGCGCTGCTTTTTCCGCGGCGACAAACCCCTTGCTGGG
GCAATATCTGGTGACAGTGGCGCTGGTGTGTTTTGCCTTTACCACCATTCTGGGCTGGAACTACTACGGCGAGCGCTGCT
GGAGCTATCTCACCGGGGGCCGTTATGCCGGTCTGTACCGGCTGGTCTTCTTGCTGCTGATTGCTGGCGGTGCCTTTATC
AAGCTCGACCTGATATGGCTCCTTGCTGACATCGTCAATGGCCTGATGGCCATCCCCAACCTGATAGCGCTGATTGGCCT
GCGCAGCGTCATCCTTGCCGAAAGTCAGCGCTATTTTGGCATGCTGGCCATGCCGGGCGGGAACGCTGCGCTGCCAAGCC
GTGCAAAAGAGGCTGAAGATGGCCTGGTGAGTTAA

Upstream 100 bases:

>100_bases
CCGGGTGGCCTTTTGCCACAGGTCTCTTCCACCTTGGTTCGCAGCCATTTCTTTTCCTCCTCCGTTTATTAATGTCGTTT
GTTTAATAACCGAGGATGCT

Downstream 100 bases:

>100_bases
GCTGTATTGGCACTTAAAGGGCTTTCAGCGGTGGGTAAACAGGACTGGTCACTGGTGAAAAGGTGATCCGGCTCCCTTGT
CTATTCGTATCTTGAATGGT

Product: sodium:alanine symporter family protein

Products: Na (I) [Cytoplasm]; L-alanine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 464

Protein sequence:

>464_residues
MDFHALLTQLNAIVWGPVTLCLLVGTGVYFTVRLKLLQLVKLPLALSLLFKPASGKGELSSFGALCTALSATIGTGNIVG
VATAIKLGGPGALFWMWVAAFFGMATKYAECLLALKYRTTDARGNIAGGPMYYIERGLGLGWLARLFAIFGVGVAFFGIG
TFAQVNAISDAMTVAFAVPTWVTASVLTLLVAAVTLGGVKRIASVAQTLVPAMAIGYVLACLWVLLSLHDAIVPALSLVV
NGAFTPVAAGGGFLGATVALAIQTGIARGVFSNESGLGSAPIAAATARTKEPVEQGLVSMTGTFFDTLIICTMTGLVLII
TGVWSGDSAGAAMTSAAFSAATNPLLGQYLVTVALVCFAFTTILGWNYYGERCWSYLTGGRYAGLYRLVFLLLIAGGAFI
KLDLIWLLADIVNGLMAIPNLIALIGLRSVILAESQRYFGMLAMPGGNAALPSRAKEAEDGLVS

Sequences:

>Translated_464_residues
MDFHALLTQLNAIVWGPVTLCLLVGTGVYFTVRLKLLQLVKLPLALSLLFKPASGKGELSSFGALCTALSATIGTGNIVG
VATAIKLGGPGALFWMWVAAFFGMATKYAECLLALKYRTTDARGNIAGGPMYYIERGLGLGWLARLFAIFGVGVAFFGIG
TFAQVNAISDAMTVAFAVPTWVTASVLTLLVAAVTLGGVKRIASVAQTLVPAMAIGYVLACLWVLLSLHDAIVPALSLVV
NGAFTPVAAGGGFLGATVALAIQTGIARGVFSNESGLGSAPIAAATARTKEPVEQGLVSMTGTFFDTLIICTMTGLVLII
TGVWSGDSAGAAMTSAAFSAATNPLLGQYLVTVALVCFAFTTILGWNYYGERCWSYLTGGRYAGLYRLVFLLLIAGGAFI
KLDLIWLLADIVNGLMAIPNLIALIGLRSVILAESQRYFGMLAMPGGNAALPSRAKEAEDGLVS
>Mature_464_residues
MDFHALLTQLNAIVWGPVTLCLLVGTGVYFTVRLKLLQLVKLPLALSLLFKPASGKGELSSFGALCTALSATIGTGNIVG
VATAIKLGGPGALFWMWVAAFFGMATKYAECLLALKYRTTDARGNIAGGPMYYIERGLGLGWLARLFAIFGVGVAFFGIG
TFAQVNAISDAMTVAFAVPTWVTASVLTLLVAAVTLGGVKRIASVAQTLVPAMAIGYVLACLWVLLSLHDAIVPALSLVV
NGAFTPVAAGGGFLGATVALAIQTGIARGVFSNESGLGSAPIAAATARTKEPVEQGLVSMTGTFFDTLIICTMTGLVLII
TGVWSGDSAGAAMTSAAFSAATNPLLGQYLVTVALVCFAFTTILGWNYYGERCWSYLTGGRYAGLYRLVFLLLIAGGAFI
KLDLIWLLADIVNGLMAIPNLIALIGLRSVILAESQRYFGMLAMPGGNAALPSRAKEAEDGLVS

Specific function: Unknown

COG id: COG1115

COG function: function code E; Na+/alanine symporter

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:alanine (SAF) symporter family [H]

Homologues:

Organism=Escherichia coli, GI1786188, Length=448, Percent_Identity=35.9375, Blast_Score=234, Evalue=9e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001463 [H]

Pfam domain/function: PF01235 Na_Ala_symp [H]

EC number: NA

Molecular weight: Translated: 48220; Mature: 48220

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: PS00873 NA_ALANINE_SYMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHCCCHHEEEEEECCCCCCCCCCHHHCCCCCCC
>Mature Secondary Structure
MDFHALLTQLNAIVWGPVTLCLLVGTGVYFTVRLKLLQLVKLPLALSLLFKPASGKGELS
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
SFGALCTALSATIGTGNIVGVATAIKLGGPGALFWMWVAAFFGMATKYAECLLALKYRTT
HHHHHHHHHHHHCCCCCHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DARGNIAGGPMYYIERGLGLGWLARLFAIFGVGVAFFGIGTFAQVNAISDAMTVAFAVPT
CCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WVTASVLTLLVAAVTLGGVKRIASVAQTLVPAMAIGYVLACLWVLLSLHDAIVPALSLVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NGAFTPVAAGGGFLGATVALAIQTGIARGVFSNESGLGSAPIAAATARTKEPVEQGLVSM
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
TGTFFDTLIICTMTGLVLIITGVWSGDSAGAAMTSAAFSAATNPLLGQYLVTVALVCFAF
HHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
TTILGWNYYGERCWSYLTGGRYAGLYRLVFLLLIAGGAFIKLDLIWLLADIVNGLMAIPN
HHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
LIALIGLRSVILAESQRYFGMLAMPGGNAALPSRAKEAEDGLVS
HHHHHHHHHHHHHCCCHHEEEEEECCCCCCCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Na (I) [Periplasm]; L-alanine [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + L-alanine [Periplasm] = Na (I) [Cytoplasm] + L-alanine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]