Click here to switch to the map view.

The map label for this gene is csgD [C]

Identifier: 119776080

GI number: 119776080

Start: 3504494

End: 3505159

Strand: Reverse

Name: csgD [C]

Synonym: Sama_2948

Alternate gene names: 119776080

Gene position: 3505159-3504494 (Counterclockwise)

Preceding gene: 119776083

Following gene: 119776077

Centisome position: 81.4

GC content: 53.0

Gene sequence:

>666_bases
TTGAATACGGTAAATGAGTTGATTTTCGTGCACCAATTGGTTGCACCCTGTCATCTGGCGATTCTGGCCGAATCCATAGG
GTTAAAAACCCGCATCGTAAAACACGTCGGTGAACTGGACTTGGATAAGCACCCCCAGGCGTTTTATCTCATCGCCCAGA
AAGGTGCTGCGCTGGACAATAAGGGCATTCCGCTGCTGGCCAGCCGGCTGACTCCCCACGTGCCCGTCGCCCTTTATCAG
GTGGAACGTCACTCTCTGGATCAGGAAGCCGCACTGCTGCTCGGGATCCGGGGATTGTTGTTTGCCGATCAGCGCATGGA
CTTGATGCTGACAGGCCTTCGCAAGATGGTCGCCGATGAGCTCTGGTTTGACCGTCCGCTTATCAGCAAGATGTTCCGCC
GACTGGTGAATAAACTGGACACCAATTCCGATGTATCACCAGACGCCATGGCGATGCTGCAATCTCTCACCGGTAGAGAA
TGCACCATTATTCAGTTGGTTGGCAGTGGTGCCAGAAACAAAGAAATTGCCGATCGCCTTTGCATCAGCGAGCACACAGT
CAAGGCGCATATTTCGTCTATTTTTCGTAAGACCCAGTCCCGTAATCGGGTAGAGTTGCTGCGTTGGGCCCAATCTCACC
AGAGCCATTTTGCTCTGGTCAGCTGA

Upstream 100 bases:

>100_bases
TGCTCAGTCCGCAAAATTGGGGATCCCTGTTCAATGGTCTGGCGTTTTTTTAGCCGCACATGGAAGTTTGAACGACGGCG
GTCAACAAGGAGAAAGAGGG

Downstream 100 bases:

>100_bases
GTGCTTGCGCTGAGTTTTTACCGCTTAAATCTGAGTGTTTCACCGCGGTAACCCAAGATAAAAAACGTCAATAAAAAAGG
AGCCAGATGGCTCCTTTTTT

Product: response regulator receiver protein

Products: NA

Alternate protein names: Transcriptional Regulator LuxR Family; Transcriptional Regulator LuxR Family Protein; Response Regulator Receiver Protein; Two Component LuxR Family Transcriptional Regulator; Transcriptional Regulator; Response Regulator; Regulatory Protein LuxR; Nitrate/Nitrite Response Regulator; CsgAB Operon Transcriptional Regulatory Protein; LuxR Family CSG Operon Transcriptional Regulator; Two-Component Response Regulator; Csg Operon Transcription Regulator Protein; Two Component Transcriptional Regulator LuxR Family; Two-Component System Response Regulator

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MNTVNELIFVHQLVAPCHLAILAESIGLKTRIVKHVGELDLDKHPQAFYLIAQKGAALDNKGIPLLASRLTPHVPVALYQ
VERHSLDQEAALLLGIRGLLFADQRMDLMLTGLRKMVADELWFDRPLISKMFRRLVNKLDTNSDVSPDAMAMLQSLTGRE
CTIIQLVGSGARNKEIADRLCISEHTVKAHISSIFRKTQSRNRVELLRWAQSHQSHFALVS

Sequences:

>Translated_221_residues
MNTVNELIFVHQLVAPCHLAILAESIGLKTRIVKHVGELDLDKHPQAFYLIAQKGAALDNKGIPLLASRLTPHVPVALYQ
VERHSLDQEAALLLGIRGLLFADQRMDLMLTGLRKMVADELWFDRPLISKMFRRLVNKLDTNSDVSPDAMAMLQSLTGRE
CTIIQLVGSGARNKEIADRLCISEHTVKAHISSIFRKTQSRNRVELLRWAQSHQSHFALVS
>Mature_221_residues
MNTVNELIFVHQLVAPCHLAILAESIGLKTRIVKHVGELDLDKHPQAFYLIAQKGAALDNKGIPLLASRLTPHVPVALYQ
VERHSLDQEAALLLGIRGLLFADQRMDLMLTGLRKMVADELWFDRPLISKMFRRLVNKLDTNSDVSPDAMAMLQSLTGRE
CTIIQLVGSGARNKEIADRLCISEHTVKAHISSIFRKTQSRNRVELLRWAQSHQSHFALVS

Specific function: Necessary For Transcription Of The Csgab Operon. May Have The Capability To Respond To Starvation And/Or High Cell Density By Activating Csgba Transcription. [C]

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24829; Mature: 24829

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTVNELIFVHQLVAPCHLAILAESIGLKTRIVKHVGELDLDKHPQAFYLIAQKGAALDN
CCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
KGIPLLASRLTPHVPVALYQVERHSLDQEAALLLGIRGLLFADQRMDLMLTGLRKMVADE
CCCCHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LWFDRPLISKMFRRLVNKLDTNSDVSPDAMAMLQSLTGRECTIIQLVGSGARNKEIADRL
HHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHH
CISEHTVKAHISSIFRKTQSRNRVELLRWAQSHQSHFALVS
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNTVNELIFVHQLVAPCHLAILAESIGLKTRIVKHVGELDLDKHPQAFYLIAQKGAALDN
CCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
KGIPLLASRLTPHVPVALYQVERHSLDQEAALLLGIRGLLFADQRMDLMLTGLRKMVADE
CCCCHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LWFDRPLISKMFRRLVNKLDTNSDVSPDAMAMLQSLTGRECTIIQLVGSGARNKEIADRL
HHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHH
CISEHTVKAHISSIFRKTQSRNRVELLRWAQSHQSHFALVS
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA