The gene/protein map for NC_008700 is currently unavailable.
Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119776061

Identifier: 119776061

GI number: 119776061

Start: 3483023

End: 3483838

Strand: Reverse

Name: 119776061

Synonym: Sama_2929

Alternate gene names: NA

Gene position: 3483838-3483023 (Counterclockwise)

Preceding gene: 119776062

Following gene: 119776059

Centisome position: 80.9

GC content: 52.7

Gene sequence:

>816_bases
ATGAAGACTTCTATGCTGTTACTGCCACTGGTGATTGGCAGTTCCGTGGTGCAGGCCGAATCAGAGCCATTGGATTGGCG
ACTCTCTTTCGGTGTGCATGATTTTCAGGTGGAGAGTTCAGACACCTTCGGTGCCCATGCGGCCATCAGTCTGGACACAG
TCACTGATGGCGGCATCAAGCTGCACGCTAATCTGGATACTTATGTCGATCGCGACAAAGACAAATTGGATCCGGACCAC
ATCCCTATCTGGTTTCAGTCTGCCTACTATGCCCGTGGCAACTGGCTGACCTTGTCTGAAGACTTGAAGTTGGATTGGCA
GCTCGACCTTCGCGGTAAGCGCAATACTGTCAGCTCAGTGGAAAAGCAAATCAAATTCTATCCGTCGCTGTTGCTCGATT
ATGCCCGCCCGGCCTACGGCGCCACCGCGACACTGGGGATGGGGTACTACTTCCTCGAGATTGACGATGATGTGCCAAAA
GAGCGCGGTTATGTGCGCGGTGAATTTGGCAATGACGCTACCGCATGGATGGGGGATTTGGGTGGCTACATAATGCTTGC
ACCCGGTTGGAGGCTCAGCGGCGGTGTGGAATATTGGGCCGATGGCAGCGAAACTCTCGAGACTAATTATCGCGCAGCAC
TGGAGGTTAATACCCCGGGTTTATATAAAGACTCGGTGCTGACCTTCTCTATGGAGCAGAGCCACTACAATCTTGACCAC
TACGACAAGTGGCCCAAAGACTATGAAGACTATCTGCCAATTCTGCCCTGGGATACCGACACCCTCTACCGTCTGTACCT
TACTGTACCCTGGTAA

Upstream 100 bases:

>100_bases
GAACGCGGCCGGGGGAATCTGCCGCGATACTATGAAGTGGAAGCATTTTTTCGCGAAGGACGCCTGCCGCGTCCAGCCTG
AATCCTGGATGGGGGATAAG

Downstream 100 bases:

>100_bases
TCGGCGACAGTGGCGATGAACCATCAACACCGGCCTGAGCGCCGGTGTTGTTGTATTTGCACTTTACAGGCCGCCAAGGC
GCTCTTTCACCAGGGCTATC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MKTSMLLLPLVIGSSVVQAESEPLDWRLSFGVHDFQVESSDTFGAHAAISLDTVTDGGIKLHANLDTYVDRDKDKLDPDH
IPIWFQSAYYARGNWLTLSEDLKLDWQLDLRGKRNTVSSVEKQIKFYPSLLLDYARPAYGATATLGMGYYFLEIDDDVPK
ERGYVRGEFGNDATAWMGDLGGYIMLAPGWRLSGGVEYWADGSETLETNYRAALEVNTPGLYKDSVLTFSMEQSHYNLDH
YDKWPKDYEDYLPILPWDTDTLYRLYLTVPW

Sequences:

>Translated_271_residues
MKTSMLLLPLVIGSSVVQAESEPLDWRLSFGVHDFQVESSDTFGAHAAISLDTVTDGGIKLHANLDTYVDRDKDKLDPDH
IPIWFQSAYYARGNWLTLSEDLKLDWQLDLRGKRNTVSSVEKQIKFYPSLLLDYARPAYGATATLGMGYYFLEIDDDVPK
ERGYVRGEFGNDATAWMGDLGGYIMLAPGWRLSGGVEYWADGSETLETNYRAALEVNTPGLYKDSVLTFSMEQSHYNLDH
YDKWPKDYEDYLPILPWDTDTLYRLYLTVPW
>Mature_271_residues
MKTSMLLLPLVIGSSVVQAESEPLDWRLSFGVHDFQVESSDTFGAHAAISLDTVTDGGIKLHANLDTYVDRDKDKLDPDH
IPIWFQSAYYARGNWLTLSEDLKLDWQLDLRGKRNTVSSVEKQIKFYPSLLLDYARPAYGATATLGMGYYFLEIDDDVPK
ERGYVRGEFGNDATAWMGDLGGYIMLAPGWRLSGGVEYWADGSETLETNYRAALEVNTPGLYKDSVLTFSMEQSHYNLDH
YDKWPKDYEDYLPILPWDTDTLYRLYLTVPW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30930; Mature: 30930

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTSMLLLPLVIGSSVVQAESEPLDWRLSFGVHDFQVESSDTFGAHAAISLDTVTDGGIK
CCCCEEEEHHHHCCHHEECCCCCCEEEEECCEEEEEEECCCCCCCEEEEEEEEECCCCEE
LHANLDTYVDRDKDKLDPDHIPIWFQSAYYARGNWLTLSEDLKLDWQLDLRGKRNTVSSV
EEECCHHHHCCCCCCCCCCCCEEEEECEEEECCCEEEEECCCEEEEEEECCCCCCHHHHH
EKQIKFYPSLLLDYARPAYGATATLGMGYYFLEIDDDVPKERGYVRGEFGNDATAWMGDL
HHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEECCCCCCCCCEEEEECCCCHHHHHHCC
GGYIMLAPGWRLSGGVEYWADGSETLETNYRAALEVNTPGLYKDSVLTFSMEQSHYNLDH
CCEEEECCCCEECCCEEEECCCCCEEECCCEEEEEECCCCCCCCCEEEEEECCCCCCCCC
YDKWPKDYEDYLPILPWDTDTLYRLYLTVPW
CCCCCCCHHHCCCCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MKTSMLLLPLVIGSSVVQAESEPLDWRLSFGVHDFQVESSDTFGAHAAISLDTVTDGGIK
CCCCEEEEHHHHCCHHEECCCCCCEEEEECCEEEEEEECCCCCCCEEEEEEEEECCCCEE
LHANLDTYVDRDKDKLDPDHIPIWFQSAYYARGNWLTLSEDLKLDWQLDLRGKRNTVSSV
EEECCHHHHCCCCCCCCCCCCEEEEECEEEECCCEEEEECCCEEEEEEECCCCCCHHHHH
EKQIKFYPSLLLDYARPAYGATATLGMGYYFLEIDDDVPKERGYVRGEFGNDATAWMGDL
HHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEECCCCCCCCCEEEEECCCCHHHHHHCC
GGYIMLAPGWRLSGGVEYWADGSETLETNYRAALEVNTPGLYKDSVLTFSMEQSHYNLDH
CCEEEECCCCEECCCEEEECCCCCEEECCCEEEEEECCCCCCCCCEEEEEECCCCCCCCC
YDKWPKDYEDYLPILPWDTDTLYRLYLTVPW
CCCCCCCHHHCCCCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA