| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776061
Identifier: 119776061
GI number: 119776061
Start: 3483023
End: 3483838
Strand: Reverse
Name: 119776061
Synonym: Sama_2929
Alternate gene names: NA
Gene position: 3483838-3483023 (Counterclockwise)
Preceding gene: 119776062
Following gene: 119776059
Centisome position: 80.9
GC content: 52.7
Gene sequence:
>816_bases ATGAAGACTTCTATGCTGTTACTGCCACTGGTGATTGGCAGTTCCGTGGTGCAGGCCGAATCAGAGCCATTGGATTGGCG ACTCTCTTTCGGTGTGCATGATTTTCAGGTGGAGAGTTCAGACACCTTCGGTGCCCATGCGGCCATCAGTCTGGACACAG TCACTGATGGCGGCATCAAGCTGCACGCTAATCTGGATACTTATGTCGATCGCGACAAAGACAAATTGGATCCGGACCAC ATCCCTATCTGGTTTCAGTCTGCCTACTATGCCCGTGGCAACTGGCTGACCTTGTCTGAAGACTTGAAGTTGGATTGGCA GCTCGACCTTCGCGGTAAGCGCAATACTGTCAGCTCAGTGGAAAAGCAAATCAAATTCTATCCGTCGCTGTTGCTCGATT ATGCCCGCCCGGCCTACGGCGCCACCGCGACACTGGGGATGGGGTACTACTTCCTCGAGATTGACGATGATGTGCCAAAA GAGCGCGGTTATGTGCGCGGTGAATTTGGCAATGACGCTACCGCATGGATGGGGGATTTGGGTGGCTACATAATGCTTGC ACCCGGTTGGAGGCTCAGCGGCGGTGTGGAATATTGGGCCGATGGCAGCGAAACTCTCGAGACTAATTATCGCGCAGCAC TGGAGGTTAATACCCCGGGTTTATATAAAGACTCGGTGCTGACCTTCTCTATGGAGCAGAGCCACTACAATCTTGACCAC TACGACAAGTGGCCCAAAGACTATGAAGACTATCTGCCAATTCTGCCCTGGGATACCGACACCCTCTACCGTCTGTACCT TACTGTACCCTGGTAA
Upstream 100 bases:
>100_bases GAACGCGGCCGGGGGAATCTGCCGCGATACTATGAAGTGGAAGCATTTTTTCGCGAAGGACGCCTGCCGCGTCCAGCCTG AATCCTGGATGGGGGATAAG
Downstream 100 bases:
>100_bases TCGGCGACAGTGGCGATGAACCATCAACACCGGCCTGAGCGCCGGTGTTGTTGTATTTGCACTTTACAGGCCGCCAAGGC GCTCTTTCACCAGGGCTATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 271; Mature: 271
Protein sequence:
>271_residues MKTSMLLLPLVIGSSVVQAESEPLDWRLSFGVHDFQVESSDTFGAHAAISLDTVTDGGIKLHANLDTYVDRDKDKLDPDH IPIWFQSAYYARGNWLTLSEDLKLDWQLDLRGKRNTVSSVEKQIKFYPSLLLDYARPAYGATATLGMGYYFLEIDDDVPK ERGYVRGEFGNDATAWMGDLGGYIMLAPGWRLSGGVEYWADGSETLETNYRAALEVNTPGLYKDSVLTFSMEQSHYNLDH YDKWPKDYEDYLPILPWDTDTLYRLYLTVPW
Sequences:
>Translated_271_residues MKTSMLLLPLVIGSSVVQAESEPLDWRLSFGVHDFQVESSDTFGAHAAISLDTVTDGGIKLHANLDTYVDRDKDKLDPDH IPIWFQSAYYARGNWLTLSEDLKLDWQLDLRGKRNTVSSVEKQIKFYPSLLLDYARPAYGATATLGMGYYFLEIDDDVPK ERGYVRGEFGNDATAWMGDLGGYIMLAPGWRLSGGVEYWADGSETLETNYRAALEVNTPGLYKDSVLTFSMEQSHYNLDH YDKWPKDYEDYLPILPWDTDTLYRLYLTVPW >Mature_271_residues MKTSMLLLPLVIGSSVVQAESEPLDWRLSFGVHDFQVESSDTFGAHAAISLDTVTDGGIKLHANLDTYVDRDKDKLDPDH IPIWFQSAYYARGNWLTLSEDLKLDWQLDLRGKRNTVSSVEKQIKFYPSLLLDYARPAYGATATLGMGYYFLEIDDDVPK ERGYVRGEFGNDATAWMGDLGGYIMLAPGWRLSGGVEYWADGSETLETNYRAALEVNTPGLYKDSVLTFSMEQSHYNLDH YDKWPKDYEDYLPILPWDTDTLYRLYLTVPW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30930; Mature: 30930
Theoretical pI: Translated: 4.32; Mature: 4.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTSMLLLPLVIGSSVVQAESEPLDWRLSFGVHDFQVESSDTFGAHAAISLDTVTDGGIK CCCCEEEEHHHHCCHHEECCCCCCEEEEECCEEEEEEECCCCCCCEEEEEEEEECCCCEE LHANLDTYVDRDKDKLDPDHIPIWFQSAYYARGNWLTLSEDLKLDWQLDLRGKRNTVSSV EEECCHHHHCCCCCCCCCCCCEEEEECEEEECCCEEEEECCCEEEEEEECCCCCCHHHHH EKQIKFYPSLLLDYARPAYGATATLGMGYYFLEIDDDVPKERGYVRGEFGNDATAWMGDL HHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEECCCCCCCCCEEEEECCCCHHHHHHCC GGYIMLAPGWRLSGGVEYWADGSETLETNYRAALEVNTPGLYKDSVLTFSMEQSHYNLDH CCEEEECCCCEECCCEEEECCCCCEEECCCEEEEEECCCCCCCCCEEEEEECCCCCCCCC YDKWPKDYEDYLPILPWDTDTLYRLYLTVPW CCCCCCCHHHCCCCCCCCCCCEEEEEEEECC >Mature Secondary Structure MKTSMLLLPLVIGSSVVQAESEPLDWRLSFGVHDFQVESSDTFGAHAAISLDTVTDGGIK CCCCEEEEHHHHCCHHEECCCCCCEEEEECCEEEEEEECCCCCCCEEEEEEEEECCCCEE LHANLDTYVDRDKDKLDPDHIPIWFQSAYYARGNWLTLSEDLKLDWQLDLRGKRNTVSSV EEECCHHHHCCCCCCCCCCCCEEEEECEEEECCCEEEEECCCEEEEEEECCCCCCHHHHH EKQIKFYPSLLLDYARPAYGATATLGMGYYFLEIDDDVPKERGYVRGEFGNDATAWMGDL HHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEECCCCCCCCCEEEEECCCCHHHHHHCC GGYIMLAPGWRLSGGVEYWADGSETLETNYRAALEVNTPGLYKDSVLTFSMEQSHYNLDH CCEEEECCCCEECCCEEEECCCCCEEECCCEEEEEECCCCCCCCCEEEEEECCCCCCCCC YDKWPKDYEDYLPILPWDTDTLYRLYLTVPW CCCCCCCHHHCCCCCCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA