Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119776062

Identifier: 119776062

GI number: 119776062

Start: 3483858

End: 3484598

Strand: Reverse

Name: 119776062

Synonym: Sama_2930

Alternate gene names: NA

Gene position: 3484598-3483858 (Counterclockwise)

Preceding gene: 119776063

Following gene: 119776061

Centisome position: 80.92

GC content: 54.79

Gene sequence:

>741_bases
ATGGACTTACTTTCAATCCCCGAAGACTGTATCGATTTGCCCTATGAGGGTAGTTGCTACCGGTTGGTGGAGTCTCAGGA
AGAGGTGGCTACCCTGAGCCTGGTGGATAATTTTGACGAGCAAATGCTGCTGGAAAGCCTGCTGGATGGCGCCAAGCCCC
CATACAGGGAAGGCACAGCCCATTTGCACTATCTGCTGAAAACCCCTTTTCGTTACCCGCCGTTAAAACATGGTTCGCGT
TTTGGTACCCGACTGATGCCCAGCTTTTTTTATGGCAGTGAGTCGGCCCAAACCTGTTTGACCGAAGTGGCTTATTACCG
CTTTATCTTTTTGCAGGATATGGCAGTGCCTTATGAGGGCGTGCTGCACTCGGAGTACATGATGTTCAGGGTGTTGCTCA
GTGCAACGCGCTGCGCCGACCTCACCCAAATTTCCGATGACGCTCTGCAGCAACAGCTTACCCACGGCGAAGACTACCGT
TTTACTCAGGCGCTGGGGCAGCAACTGATTGAACGTGACTGCCAGCTTATTCGCAGCTTCTCGGCCCGTGAGCCGGGAGG
GGTTAACCTCGCGGTGGCAGATCCCGGTGTGATGGCGTCCGCACCTTTGGAACAGAGTTACTGGATTTGTCAGCTGGAGC
CTGCCAGACTCGCTTTTACCGAACGCGGCCGGGGGAATCTGCCGCGATACTATGAAGTGGAAGCATTTTTTCGCGAAGGA
CGCCTGCCGCGTCCAGCCTGA

Upstream 100 bases:

>100_bases
CAATCATGCACTTGGGGGTACACCCCGGGAGCTGGTCAAGTCTGTGGTGGGCCTGGTCAGTGTGAATCAATACCTCGATG
CCATGCGTGGCAAGGTGTAA

Downstream 100 bases:

>100_bases
ATCCTGGATGGGGGATAAGATGAAGACTTCTATGCTGTTACTGCCACTGGTGATTGGCAGTTCCGTGGTGCAGGCCGAAT
CAGAGCCATTGGATTGGCGA

Product: hypothetical protein

Products: NA

Alternate protein names: RES Domain-Containing Protein

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MDLLSIPEDCIDLPYEGSCYRLVESQEEVATLSLVDNFDEQMLLESLLDGAKPPYREGTAHLHYLLKTPFRYPPLKHGSR
FGTRLMPSFFYGSESAQTCLTEVAYYRFIFLQDMAVPYEGVLHSEYMMFRVLLSATRCADLTQISDDALQQQLTHGEDYR
FTQALGQQLIERDCQLIRSFSAREPGGVNLAVADPGVMASAPLEQSYWICQLEPARLAFTERGRGNLPRYYEVEAFFREG
RLPRPA

Sequences:

>Translated_246_residues
MDLLSIPEDCIDLPYEGSCYRLVESQEEVATLSLVDNFDEQMLLESLLDGAKPPYREGTAHLHYLLKTPFRYPPLKHGSR
FGTRLMPSFFYGSESAQTCLTEVAYYRFIFLQDMAVPYEGVLHSEYMMFRVLLSATRCADLTQISDDALQQQLTHGEDYR
FTQALGQQLIERDCQLIRSFSAREPGGVNLAVADPGVMASAPLEQSYWICQLEPARLAFTERGRGNLPRYYEVEAFFREG
RLPRPA
>Mature_246_residues
MDLLSIPEDCIDLPYEGSCYRLVESQEEVATLSLVDNFDEQMLLESLLDGAKPPYREGTAHLHYLLKTPFRYPPLKHGSR
FGTRLMPSFFYGSESAQTCLTEVAYYRFIFLQDMAVPYEGVLHSEYMMFRVLLSATRCADLTQISDDALQQQLTHGEDYR
FTQALGQQLIERDCQLIRSFSAREPGGVNLAVADPGVMASAPLEQSYWICQLEPARLAFTERGRGNLPRYYEVEAFFREG
RLPRPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28090; Mature: 28090

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLLSIPEDCIDLPYEGSCYRLVESQEEVATLSLVDNFDEQMLLESLLDGAKPPYREGTA
CCCCCCCHHHHCCCCCCCHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHH
HLHYLLKTPFRYPPLKHGSRFGTRLMPSFFYGSESAQTCLTEVAYYRFIFLQDMAVPYEG
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
VLHSEYMMFRVLLSATRCADLTQISDDALQQQLTHGEDYRFTQALGQQLIERDCQLIRSF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
SAREPGGVNLAVADPGVMASAPLEQSYWICQLEPARLAFTERGRGNLPRYYEVEAFFREG
CCCCCCCCEEEEECCCCCCCCCCCCCEEEEEECCHHHEEECCCCCCCCCEEHHHHHHHCC
RLPRPA
CCCCCC
>Mature Secondary Structure
MDLLSIPEDCIDLPYEGSCYRLVESQEEVATLSLVDNFDEQMLLESLLDGAKPPYREGTA
CCCCCCCHHHHCCCCCCCHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHH
HLHYLLKTPFRYPPLKHGSRFGTRLMPSFFYGSESAQTCLTEVAYYRFIFLQDMAVPYEG
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
VLHSEYMMFRVLLSATRCADLTQISDDALQQQLTHGEDYRFTQALGQQLIERDCQLIRSF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
SAREPGGVNLAVADPGVMASAPLEQSYWICQLEPARLAFTERGRGNLPRYYEVEAFFREG
CCCCCCCCEEEEECCCCCCCCCCCCCEEEEEECCHHHEEECCCCCCCCCEEHHHHHHHCC
RLPRPA
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA