| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776055
Identifier: 119776055
GI number: 119776055
Start: 3477626
End: 3478192
Strand: Reverse
Name: 119776055
Synonym: Sama_2923
Alternate gene names: NA
Gene position: 3478192-3477626 (Counterclockwise)
Preceding gene: 119776056
Following gene: 119776054
Centisome position: 80.77
GC content: 51.32
Gene sequence:
>567_bases ATGTCAGACAAACATTACATTACGGCGCAGCAGCTGCTCGAAGATTCATTTCGCCTGGCAGCCCAGGTGTATGAAAGCGG CTTTCGTCCGCAGTTTATTGTGGGGATCTGGCGTGGTGGTGCACCCATAGGGATTGCGGTGCAGGAATACTTCGATTTCA AAAAGGTCGATACCGACCATATCGCCGTGCGTACCTCGTCTTACTATGGCATAGGTACCGACAAGCAGAGCAAGGAAATC AAGGTCCACGGACTGCATTACATCATCGAAAACTGTAACGCCGACGACGGCCTGCTGATTGTGGATGATGTATTCGACTC TGGCCGCAGCATCCATGCCCTGAAAGAAAAACTGTCGCAGCTGATGCGCCTCAATATGCCCCGCGATATCCGTATTGCCT GTCCATACTACAAACCCAAAAACACCGCCGTGCCTTTAAAGCCGGATTACTACATCCACTCATCTGAAGATTGGCTGGTG TTCCCCCACGAAGTCTCGGGTCTGACCCCGGATGAGATAGCGAACGGCAAGAGTGACCTGAAAAACATCGCCGAGCTGTT TATCTAA
Upstream 100 bases:
>100_bases AAATTTGTGTAAAATGCGCGCCCAAATCATGGCGGATACCGGGTTTGGGCCTCATCCGCGAATTACCAAAAAACAGCAAT AGGATGATGGGGACGCTTCT
Downstream 100 bases:
>100_bases GCTTGTTATATCAGTTTGTTACGCAAGCCCGTGATGTAGGCCCCTGATGTAAGCCTTGCGCTGCTTCGTGGATGGGTAAA AGCCGTGCCCCTGCTGACTA
Product: hypoxanthine-guanine phosphoribosyltransferase
Products: NA
Alternate protein names: Hypoxanthine-Guanine Phosphoribosyltransferase; Hypoxanthine Phosphoribosyltransferase; Phosphoribosyl Transferase Domain Protein
Number of amino acids: Translated: 188; Mature: 187
Protein sequence:
>188_residues MSDKHYITAQQLLEDSFRLAAQVYESGFRPQFIVGIWRGGAPIGIAVQEYFDFKKVDTDHIAVRTSSYYGIGTDKQSKEI KVHGLHYIIENCNADDGLLIVDDVFDSGRSIHALKEKLSQLMRLNMPRDIRIACPYYKPKNTAVPLKPDYYIHSSEDWLV FPHEVSGLTPDEIANGKSDLKNIAELFI
Sequences:
>Translated_188_residues MSDKHYITAQQLLEDSFRLAAQVYESGFRPQFIVGIWRGGAPIGIAVQEYFDFKKVDTDHIAVRTSSYYGIGTDKQSKEI KVHGLHYIIENCNADDGLLIVDDVFDSGRSIHALKEKLSQLMRLNMPRDIRIACPYYKPKNTAVPLKPDYYIHSSEDWLV FPHEVSGLTPDEIANGKSDLKNIAELFI >Mature_187_residues SDKHYITAQQLLEDSFRLAAQVYESGFRPQFIVGIWRGGAPIGIAVQEYFDFKKVDTDHIAVRTSSYYGIGTDKQSKEIK VHGLHYIIENCNADDGLLIVDDVFDSGRSIHALKEKLSQLMRLNMPRDIRIACPYYKPKNTAVPLKPDYYIHSSEDWLVF PHEVSGLTPDEIANGKSDLKNIAELFI
Specific function: Unknown
COG id: COG2236
COG function: function code R; Predicted phosphoribosyltransferases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21365; Mature: 21233
Theoretical pI: Translated: 6.15; Mature: 6.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDKHYITAQQLLEDSFRLAAQVYESGFRPQFIVGIWRGGAPIGIAVQEYFDFKKVDTDH CCCCCEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEHHHHHCHHCCCCCE IAVRTSSYYGIGTDKQSKEIKVHGLHYIIENCNADDGLLIVDDVFDSGRSIHALKEKLSQ EEEEECCEECCCCCCCCCEEEEEHEEEEEECCCCCCCEEEEECCCCCCCCHHHHHHHHHH LMRLNMPRDIRIACPYYKPKNTAVPLKPDYYIHSSEDWLVFPHEVSGLTPDEIANGKSDL HHHCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCEEEECHHCCCCCHHHHCCCHHHH KNIAELFI HHHHHHCC >Mature Secondary Structure SDKHYITAQQLLEDSFRLAAQVYESGFRPQFIVGIWRGGAPIGIAVQEYFDFKKVDTDH CCCCEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEHHHHHCHHCCCCCE IAVRTSSYYGIGTDKQSKEIKVHGLHYIIENCNADDGLLIVDDVFDSGRSIHALKEKLSQ EEEEECCEECCCCCCCCCEEEEEHEEEEEECCCCCCCEEEEECCCCCCCCHHHHHHHHHH LMRLNMPRDIRIACPYYKPKNTAVPLKPDYYIHSSEDWLVFPHEVSGLTPDEIANGKSDL HHHCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCEEEECHHCCCCCHHHHCCCHHHH KNIAELFI HHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA