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The map label for this gene is cph2 [H]

Identifier: 119776003

GI number: 119776003

Start: 3409113

End: 3410807

Strand: Reverse

Name: cph2 [H]

Synonym: Sama_2871

Alternate gene names: 119776003

Gene position: 3410807-3409113 (Counterclockwise)

Preceding gene: 119776005

Following gene: 119776001

Centisome position: 79.21

GC content: 54.45

Gene sequence:

>1695_bases
ATGATACGTCTCTTATTTATTTGGCTGGCATGCTTGCCAGTGTTCAGCGGCGCTCTGTATGCCGCGTCCTTACCGGTTGA
ATCCAATGCCCCCAGCAAATACGCTCTCGCGGTTGCTGAAGCGCGTACAGCACTATTGCCCCTAACCCCTTATCTAAGCC
TGCTGGAAGACTCCGGGGGGCAGCTCAGCTTCGATGATGTCAGGCAACAGGCAGAGCAGAACAAGTTCATCCCCCTCAAA
GGTTCCGCTAATTTCGGTTTCAGTCCGTCAACATGGTGGGTCAGGGTGAGTGTGCATAATCCCGCTGACGAGGCGCGGCA
GTTTTATCTGCGCCAGGATTATCCATTGATTGATTTTCTCGACCTGTGGCAACCCTCTGCTGATGGATGGCTCCATACTG
CCACGGGTGACAGGCGAGCGTTTCACAGTCGCTTACTGGATTTGCGCACCTTTGTATTTCCGCTCACCCTGGCTCCCGGT
GAAACCCAAACCCTGTATCTGCGTTTTGAAACTCAGGGGTCGCTGAATATTGGCCTTGCGCTCTATGCGCCGAGCGAGCT
TATCAGTCAGGTGACCTGGGAATATCTGTCCCTCGGCATTTACTACGGCGGCTTTATCGTGCTGCTGGTATATAACCTGA
TTATCTTCCTCACTGTGCGTGAGCGGGCATTTATTTTTTATGTGCTCTATGTGCTCAGCTATGGCCTCTACATGTCGGTT
CACAATGGTCTGAGTTTTCAGTATCTGTGGCCTGAAAACAGTTGGATGGCCAACAAGAGTCTGTTACTGCTGCTCGCCCT
GTCGCTGTTTGGCGCACTGAGGTTTACCCGGGAAATCCTCGGTTTGGCGCAGATCCTGCCGGGAGCCGACAGGCTGGCGG
CGCGGGTGGAGTGGGGCTGCGTGCTCGGGCTCATACTGGCCCCGATACTGAGCTACCATCTCGTGGTGTTGCTGCTGTCG
GTACTGACCACCTTTATCTGCATTCAACTGCTGGTGGTGGGTGTCATGGCGCTGATGAAAGGGTCGCGTCCGGCGCGCTT
TTACTTGGTTGCCTTCAGTGCGCTGCTGCTTGGCGCCTTTGTGTATATGCTCAAGAGCTTTGGCGTATTGCCCCATAATG
CCTTCACCCAAAATGCGTTCCAGTTGGGCTCTCTCGTGGAGATGGTGCTCCTGAGTCTGGCACTTGGCAGCCGCATGCAG
GACATCAAGCGGCGGAATCATATCGATGTACTGACCGGCCTCTATAACAGGCGATTCTTTGATGAACAGTTGCAGCAGGA
GTATTTAAAGGCCTGTCGCCGTCATCAGCCACTGTCGCTGCTGGTGCTGGATATTGATTACTTCAAGCAATTCAATGACA
GTCGCGGCCATGCCGAGGGTGACAAGGCATTGCAGTTGGTGGCAGATATACTGGCTGGCACAGTGCAAAAGCCCGGCATG
GCCTGCCGCTACGGTGGTGAAGAGTTTGCCCTTATCCTGCCTGAAACGAGCGCCGGGGAGGCCATGCAGTTGGCCGAGCG
GATCCGTGAAAAGGTAGTCAGAGACACTAAAGAGCGGATTGAACTTACCGTGAGTATCGGATGCAGTGAGTTTGATGCAA
AGCAGCATCTGAGTGGCTTTGCCCTGTTTGAAGCGGCGGACGAGGCCCTGTACCGCGCCAAAGCCGATGGACGCAATTGC
GTAAGAGCTTGCTGA

Upstream 100 bases:

>100_bases
GGTGTTATAGTGAGCTTGGTGCGGCACAGAAAAACTAAACGTCAACGGACAGCGTAGATGGAACTGACTGAGGCATACAA
AACCGCCGCCCCGAGATCCT

Downstream 100 bases:

>100_bases
CATCCGCTTGCTAATCAGAAATCAAAACATCAGGTATTAAAAAAGCCGCGTTATCGCGGCTTTTTTCTGCTCAGGCGGCC
ATGGGCTCAGTCTTCGACTT

Product: response regulator

Products: 3',5'-cyclic AMP; diphosphate

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 564; Mature: 564

Protein sequence:

>564_residues
MIRLLFIWLACLPVFSGALYAASLPVESNAPSKYALAVAEARTALLPLTPYLSLLEDSGGQLSFDDVRQQAEQNKFIPLK
GSANFGFSPSTWWVRVSVHNPADEARQFYLRQDYPLIDFLDLWQPSADGWLHTATGDRRAFHSRLLDLRTFVFPLTLAPG
ETQTLYLRFETQGSLNIGLALYAPSELISQVTWEYLSLGIYYGGFIVLLVYNLIIFLTVRERAFIFYVLYVLSYGLYMSV
HNGLSFQYLWPENSWMANKSLLLLLALSLFGALRFTREILGLAQILPGADRLAARVEWGCVLGLILAPILSYHLVVLLLS
VLTTFICIQLLVVGVMALMKGSRPARFYLVAFSALLLGAFVYMLKSFGVLPHNAFTQNAFQLGSLVEMVLLSLALGSRMQ
DIKRRNHIDVLTGLYNRRFFDEQLQQEYLKACRRHQPLSLLVLDIDYFKQFNDSRGHAEGDKALQLVADILAGTVQKPGM
ACRYGGEEFALILPETSAGEAMQLAERIREKVVRDTKERIELTVSIGCSEFDAKQHLSGFALFEAADEALYRAKADGRNC
VRAC

Sequences:

>Translated_564_residues
MIRLLFIWLACLPVFSGALYAASLPVESNAPSKYALAVAEARTALLPLTPYLSLLEDSGGQLSFDDVRQQAEQNKFIPLK
GSANFGFSPSTWWVRVSVHNPADEARQFYLRQDYPLIDFLDLWQPSADGWLHTATGDRRAFHSRLLDLRTFVFPLTLAPG
ETQTLYLRFETQGSLNIGLALYAPSELISQVTWEYLSLGIYYGGFIVLLVYNLIIFLTVRERAFIFYVLYVLSYGLYMSV
HNGLSFQYLWPENSWMANKSLLLLLALSLFGALRFTREILGLAQILPGADRLAARVEWGCVLGLILAPILSYHLVVLLLS
VLTTFICIQLLVVGVMALMKGSRPARFYLVAFSALLLGAFVYMLKSFGVLPHNAFTQNAFQLGSLVEMVLLSLALGSRMQ
DIKRRNHIDVLTGLYNRRFFDEQLQQEYLKACRRHQPLSLLVLDIDYFKQFNDSRGHAEGDKALQLVADILAGTVQKPGM
ACRYGGEEFALILPETSAGEAMQLAERIREKVVRDTKERIELTVSIGCSEFDAKQHLSGFALFEAADEALYRAKADGRNC
VRAC
>Mature_564_residues
MIRLLFIWLACLPVFSGALYAASLPVESNAPSKYALAVAEARTALLPLTPYLSLLEDSGGQLSFDDVRQQAEQNKFIPLK
GSANFGFSPSTWWVRVSVHNPADEARQFYLRQDYPLIDFLDLWQPSADGWLHTATGDRRAFHSRLLDLRTFVFPLTLAPG
ETQTLYLRFETQGSLNIGLALYAPSELISQVTWEYLSLGIYYGGFIVLLVYNLIIFLTVRERAFIFYVLYVLSYGLYMSV
HNGLSFQYLWPENSWMANKSLLLLLALSLFGALRFTREILGLAQILPGADRLAARVEWGCVLGLILAPILSYHLVVLLLS
VLTTFICIQLLVVGVMALMKGSRPARFYLVAFSALLLGAFVYMLKSFGVLPHNAFTQNAFQLGSLVEMVLLSLALGSRMQ
DIKRRNHIDVLTGLYNRRFFDEQLQQEYLKACRRHQPLSLLVLDIDYFKQFNDSRGHAEGDKALQLVADILAGTVQKPGM
ACRYGGEEFALILPETSAGEAMQLAERIREKVVRDTKERIELTVSIGCSEFDAKQHLSGFALFEAADEALYRAKADGRNC
VRAC

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=160, Percent_Identity=42.5, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI1787262, Length=186, Percent_Identity=33.8709677419355, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI87081881, Length=162, Percent_Identity=41.358024691358, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI1787802, Length=173, Percent_Identity=37.5722543352601, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI1786584, Length=178, Percent_Identity=33.7078651685393, Blast_Score=99, Evalue=7e-22,
Organism=Escherichia coli, GI87081974, Length=172, Percent_Identity=33.7209302325581, Blast_Score=95, Evalue=9e-21,
Organism=Escherichia coli, GI87082007, Length=168, Percent_Identity=38.0952380952381, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1787816, Length=161, Percent_Identity=36.0248447204969, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1788085, Length=161, Percent_Identity=32.2981366459627, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI1788381, Length=158, Percent_Identity=33.5443037974684, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1787056, Length=192, Percent_Identity=28.6458333333333, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: 4.6.1.1

Molecular weight: Translated: 63356; Mature: 63356

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRLLFIWLACLPVFSGALYAASLPVESNAPSKYALAVAEARTALLPLTPYLSLLEDSGG
CHHHHHHHHHHHHHHCCHHHEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCC
QLSFDDVRQQAEQNKFIPLKGSANFGFSPSTWWVRVSVHNPADEARQFYLRQDYPLIDFL
CCCHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCHHHHH
DLWQPSADGWLHTATGDRRAFHSRLLDLRTFVFPLTLAPGETQTLYLRFETQGSLNIGLA
HHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHEEEECCCCCEEEEEEEECCCCCEEEEE
LYAPSELISQVTWEYLSLGIYYGGFIVLLVYNLIIFLTVRERAFIFYVLYVLSYGLYMSV
EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
HNGLSFQYLWPENSWMANKSLLLLLALSLFGALRFTREILGLAQILPGADRLAARVEWGC
CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
VLGLILAPILSYHLVVLLLSVLTTFICIQLLVVGVMALMKGSRPARFYLVAFSALLLGAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
VYMLKSFGVLPHNAFTQNAFQLGSLVEMVLLSLALGSRMQDIKRRNHIDVLTGLYNRRFF
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
DEQLQQEYLKACRRHQPLSLLVLDIDYFKQFNDSRGHAEGDKALQLVADILAGTVQKPGM
HHHHHHHHHHHHHCCCCCEEEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
ACRYGGEEFALILPETSAGEAMQLAERIREKVVRDTKERIELTVSIGCSEFDAKQHLSGF
EEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHEEEEEEECCCHHCHHHHHCHH
ALFEAADEALYRAKADGRNCVRAC
HHHHHHHHHHHHHCCCCCHHHCCC
>Mature Secondary Structure
MIRLLFIWLACLPVFSGALYAASLPVESNAPSKYALAVAEARTALLPLTPYLSLLEDSGG
CHHHHHHHHHHHHHHCCHHHEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCC
QLSFDDVRQQAEQNKFIPLKGSANFGFSPSTWWVRVSVHNPADEARQFYLRQDYPLIDFL
CCCHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCHHHHH
DLWQPSADGWLHTATGDRRAFHSRLLDLRTFVFPLTLAPGETQTLYLRFETQGSLNIGLA
HHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHEEEECCCCCEEEEEEEECCCCCEEEEE
LYAPSELISQVTWEYLSLGIYYGGFIVLLVYNLIIFLTVRERAFIFYVLYVLSYGLYMSV
EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
HNGLSFQYLWPENSWMANKSLLLLLALSLFGALRFTREILGLAQILPGADRLAARVEWGC
CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
VLGLILAPILSYHLVVLLLSVLTTFICIQLLVVGVMALMKGSRPARFYLVAFSALLLGAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
VYMLKSFGVLPHNAFTQNAFQLGSLVEMVLLSLALGSRMQDIKRRNHIDVLTGLYNRRFF
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
DEQLQQEYLKACRRHQPLSLLVLDIDYFKQFNDSRGHAEGDKALQLVADILAGTVQKPGM
HHHHHHHHHHHHHCCCCCEEEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
ACRYGGEEFALILPETSAGEAMQLAERIREKVVRDTKERIELTVSIGCSEFDAKQHLSGF
EEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHEEEEEEECCCHHCHHHHHCHH
ALFEAADEALYRAKADGRNCVRAC
HHHHHHHHHHHHHCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP

Specific reaction: ATP = 3',5'-cyclic AMP + diphosphate

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]