Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119776005

Identifier: 119776005

GI number: 119776005

Start: 3411621

End: 3411833

Strand: Reverse

Name: 119776005

Synonym: Sama_2873

Alternate gene names: NA

Gene position: 3411833-3411621 (Counterclockwise)

Preceding gene: 119776006

Following gene: 119776003

Centisome position: 79.23

GC content: 53.99

Gene sequence:

>213_bases
ATGACCAAAAAGGCTTACCCATTAAGGATCAATGCCGATGTCCTCGCGGCCATGCAGCGCTGGGCCGATGATGAGCTGAG
AAGCCTGAATGCGCAGATGGAGTATGTGCTGCGGGAAGCCCTGGTGCAAAGCGGCCGGGTAAAATTGGTACAAAAGGTGG
TGGTGGAAGTGCAGGAAAACGATGAGCCTGACTCTGCCGAAAACAGGGAGTAA

Upstream 100 bases:

>100_bases
GAGCGCAAGGCGGTGATGGTGAGTAACCTGTTGGTGGTGCTGTGTGGTGATAAGAGTACTCAGCCTGTTGTGAACACGGG
TTCCCTGTACTGAGGCGCTT

Downstream 100 bases:

>100_bases
ACACCGCCCTGACGATGGCAGTCTCAAAAGGCCATGGCAGGTTCTAAAAAGGAAGCGCTGGGCTTCCTTTTTATTGATTC
GCTTCAGAGGCGCTGACTGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MTKKAYPLRINADVLAAMQRWADDELRSLNAQMEYVLREALVQSGRVKLVQKVVVEVQENDEPDSAENRE

Sequences:

>Translated_70_residues
MTKKAYPLRINADVLAAMQRWADDELRSLNAQMEYVLREALVQSGRVKLVQKVVVEVQENDEPDSAENRE
>Mature_69_residues
TKKAYPLRINADVLAAMQRWADDELRSLNAQMEYVLREALVQSGRVKLVQKVVVEVQENDEPDSAENRE

Specific function: Unknown

COG id: COG4877

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8059; Mature: 7928

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKAYPLRINADVLAAMQRWADDELRSLNAQMEYVLREALVQSGRVKLVQKVVVEVQEN
CCCCCCCEEECHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
DEPDSAENRE
CCCCCCCCCC
>Mature Secondary Structure 
TKKAYPLRINADVLAAMQRWADDELRSLNAQMEYVLREALVQSGRVKLVQKVVVEVQEN
CCCCCCEEECHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
DEPDSAENRE
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA