Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
---|---|
Accession | NC_008700 |
Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is leuE [H]
Identifier: 119775965
GI number: 119775965
Start: 3369678
End: 3370304
Strand: Reverse
Name: leuE [H]
Synonym: Sama_2833
Alternate gene names: 119775965
Gene position: 3370304-3369678 (Counterclockwise)
Preceding gene: 119775969
Following gene: 119775963
Centisome position: 78.27
GC content: 55.98
Gene sequence:
>627_bases ATGAGTTTCAGTGTTTGGCTGGCGCTGCTGGCCGTGTGTTGTTTGGGGGCTATGTCGCCGGGGCCCAGCCTGGCCATGGT GGTGCGTCATACCCTGGGTGGCGGCAGGGGAGCCGGTATTGCCTGTGCCTGGGCCCACGCTATTGGTATTGGTGTATATG CGCTTATTACCCTGCTGGGGCTGGCCCTTGCCATGAAAGAAGCGCCACTGCTGTTTAATGGCATTGCCCTGATTGGTGCC CTTTACCTGATGTGGATGGGCTGGGGCGCGCTGAACTCAAAAGGCGGCATGCAGGACAAACTTGCTGCTGGCAAGGCATC TTCACTCAGCGAGGCGGCCCGTGACGGTATTGCGATATCGCTATTCAACCCTAAGATTTTGCTGTTTTTTTTGGCGCTCT TTAGTCAGTTTGTGATGGCGTCTTCCACCATTGAAGGCAAGGCGATTATCGTGCTCACGCCGCTCATAGTGGATGGTCTC TGGTACACTATAGTGGCGCTTTTGCTGTCGCATCCGCGGCTGCTGCCGAAATTACGGGAGAAGGCGGCCATCATCGACAA GCTGTCCGGCGCTATTTTGATTTTGCTTGGCCTCAGGGTGATTTGGACTCTGTGGCAAGGGCTGTGA
Upstream 100 bases:
>100_bases TCTGGGGCTTCGATGTCAGCTTCTCTGCACGGCAGATAGAAAATGCTTAGTCAGACCCGCATTAAAAGTGATGCCGGATC CGCAGTAAATTGGGGGAAGT
Downstream 100 bases:
>100_bases TGAACCCTTACAGGAACCAAAAAGGCCGCACGATGCGGCCTTTTTAATGAGCTCTGAGTGGCTCAGAGCTTGAACGTTTG CACAGCATTATCAACAGCAG
Product: amino acid transporter LysE
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 208; Mature: 207
Protein sequence:
>208_residues MSFSVWLALLAVCCLGAMSPGPSLAMVVRHTLGGGRGAGIACAWAHAIGIGVYALITLLGLALAMKEAPLLFNGIALIGA LYLMWMGWGALNSKGGMQDKLAAGKASSLSEAARDGIAISLFNPKILLFFLALFSQFVMASSTIEGKAIIVLTPLIVDGL WYTIVALLLSHPRLLPKLREKAAIIDKLSGAILILLGLRVIWTLWQGL
Sequences:
>Translated_208_residues MSFSVWLALLAVCCLGAMSPGPSLAMVVRHTLGGGRGAGIACAWAHAIGIGVYALITLLGLALAMKEAPLLFNGIALIGA LYLMWMGWGALNSKGGMQDKLAAGKASSLSEAARDGIAISLFNPKILLFFLALFSQFVMASSTIEGKAIIVLTPLIVDGL WYTIVALLLSHPRLLPKLREKAAIIDKLSGAILILLGLRVIWTLWQGL >Mature_207_residues SFSVWLALLAVCCLGAMSPGPSLAMVVRHTLGGGRGAGIACAWAHAIGIGVYALITLLGLALAMKEAPLLFNGIALIGAL YLMWMGWGALNSKGGMQDKLAAGKASSLSEAARDGIAISLFNPKILLFFLALFSQFVMASSTIEGKAIIVLTPLIVDGLW YTIVALLLSHPRLLPKLREKAAIIDKLSGAILILLGLRVIWTLWQGL
Specific function: Exporter of leucine [H]
COG id: COG1280
COG function: function code E; Putative threonine efflux protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the rht family [H]
Homologues:
Organism=Escherichia coli, GI1786522, Length=190, Percent_Identity=26.8421052631579, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI48994978, Length=187, Percent_Identity=28.3422459893048, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1788099, Length=133, Percent_Identity=27.0676691729323, Blast_Score=62, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001123 [H]
Pfam domain/function: PF01810 LysE [H]
EC number: NA
Molecular weight: Translated: 21953; Mature: 21822
Theoretical pI: Translated: 10.12; Mature: 10.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFSVWLALLAVCCLGAMSPGPSLAMVVRHTLGGGRGAGIACAWAHAIGIGVYALITLLG CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH LALAMKEAPLLFNGIALIGALYLMWMGWGALNSKGGMQDKLAAGKASSLSEAARDGIAIS HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHHHHCCEEEE LFNPKILLFFLALFSQFVMASSTIEGKAIIVLTPLIVDGLWYTIVALLLSHPRLLPKLRE EECHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHH KAAIIDKLSGAILILLGLRVIWTLWQGL HHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SFSVWLALLAVCCLGAMSPGPSLAMVVRHTLGGGRGAGIACAWAHAIGIGVYALITLLG CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH LALAMKEAPLLFNGIALIGALYLMWMGWGALNSKGGMQDKLAAGKASSLSEAARDGIAIS HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHHHHCCEEEE LFNPKILLFFLALFSQFVMASSTIEGKAIIVLTPLIVDGLWYTIVALLLSHPRLLPKLRE EECHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHH KAAIIDKLSGAILILLGLRVIWTLWQGL HHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA