| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775912
Identifier: 119775912
GI number: 119775912
Start: 3322665
End: 3323534
Strand: Reverse
Name: 119775912
Synonym: Sama_2780
Alternate gene names: NA
Gene position: 3323534-3322665 (Counterclockwise)
Preceding gene: 119775913
Following gene: 119775905
Centisome position: 77.18
GC content: 34.37
Gene sequence:
>870_bases ATGAATACATTAGAAGAGCTATTTCCATCTGAACCTACATTTTTTGGCACATGGCAAACTCTTTATTTAGAACCTATTGT TGGTTCTGGAGAAAGAATATCTGTTGCCGTTGTGGCTATTGGAAATAACAATCAATATGGAATAATACAAGCAATCAGAT CTGAATTACTTGAGTGCTTATATGGTTCACAATCTCAAAATATGCAAAGTATTATTGATTGGCTAATTGAGTCAGCATCA AATGAGCTTAAGCTTCATAGAAGCTTATCTGAGTGGACTGCTCCTTTTGGTGGAGTAATATTAGGAAGCATACATCCTGC TGCTGATGACAGCATCGAAGGCATATTGAAACAAGCTATACGCTTTACTGCTAGTTTAAGCACTCTTGCTCTTGATGCTG AGAGAGAGGAAGATGAATTCCAGTCAAAACGTTATAGTGAACAATGGGCAACAAGTATTTTTGATGAAATAAAAACAATA AACCCTAACTTATCTAACTGTTTTAAAAAGCGTTTAAAAATTAGCGAAAGCAATTTATTAACTTCGTTTGGATTCATGAA TGAGAAATATGTTTCAAACTTTGGCTTGCTTGTTCCTACAAGACTATCAACTTCCTTAAATAATGTGAAAGCTAAGCTGT TTGATTTGGAAGCGCTAAAGAAATCACAGGTGTTAATTAAACCCCAAATATATGAAATTATTATTGGCACACCATCTTTG TCTGATCCAACGTTAACTGACACATCAGTAAAAAGATTAAGAGAAACTATTGATATGGTTACTGAAGTTGCCGCATCAGA AGACATTAAACTATTTAGAGCTGAAAATGCGAGAGAAGCTGCTATTCATATAAATAAAATCGCAGCTTAG
Upstream 100 bases:
>100_bases AGCAGATTATAAAGGTTATAGGGTTTCTTGAGAAAAGAACTGAGCACATTAAAATATTAATGAATCGAAGACTGGGAATT CAACAACAGGAGATGGCGTT
Downstream 100 bases:
>100_bases AAAGCTAACAAGAAAATTCAGGTGAAGCCTACGGCGCAACTGATTTAGGCGTTAATCTCCCAGAACCGCACGCCTCTGCT CAGTAGCGCCAACCACCTCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 289; Mature: 289
Protein sequence:
>289_residues MNTLEELFPSEPTFFGTWQTLYLEPIVGSGERISVAVVAIGNNNQYGIIQAIRSELLECLYGSQSQNMQSIIDWLIESAS NELKLHRSLSEWTAPFGGVILGSIHPAADDSIEGILKQAIRFTASLSTLALDAEREEDEFQSKRYSEQWATSIFDEIKTI NPNLSNCFKKRLKISESNLLTSFGFMNEKYVSNFGLLVPTRLSTSLNNVKAKLFDLEALKKSQVLIKPQIYEIIIGTPSL SDPTLTDTSVKRLRETIDMVTEVAASEDIKLFRAENAREAAIHINKIAA
Sequences:
>Translated_289_residues MNTLEELFPSEPTFFGTWQTLYLEPIVGSGERISVAVVAIGNNNQYGIIQAIRSELLECLYGSQSQNMQSIIDWLIESAS NELKLHRSLSEWTAPFGGVILGSIHPAADDSIEGILKQAIRFTASLSTLALDAEREEDEFQSKRYSEQWATSIFDEIKTI NPNLSNCFKKRLKISESNLLTSFGFMNEKYVSNFGLLVPTRLSTSLNNVKAKLFDLEALKKSQVLIKPQIYEIIIGTPSL SDPTLTDTSVKRLRETIDMVTEVAASEDIKLFRAENAREAAIHINKIAA >Mature_289_residues MNTLEELFPSEPTFFGTWQTLYLEPIVGSGERISVAVVAIGNNNQYGIIQAIRSELLECLYGSQSQNMQSIIDWLIESAS NELKLHRSLSEWTAPFGGVILGSIHPAADDSIEGILKQAIRFTASLSTLALDAEREEDEFQSKRYSEQWATSIFDEIKTI NPNLSNCFKKRLKISESNLLTSFGFMNEKYVSNFGLLVPTRLSTSLNNVKAKLFDLEALKKSQVLIKPQIYEIIIGTPSL SDPTLTDTSVKRLRETIDMVTEVAASEDIKLFRAENAREAAIHINKIAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32269; Mature: 32269
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTLEELFPSEPTFFGTWQTLYLEPIVGSGERISVAVVAIGNNNQYGIIQAIRSELLECL CCCHHHHCCCCCCEEECEEEEEEEECCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHH YGSQSQNMQSIIDWLIESASNELKLHRSLSEWTAPFGGVILGSIHPAADDSIEGILKQAI CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHH RFTASLSTLALDAEREEDEFQSKRYSEQWATSIFDEIKTINPNLSNCFKKRLKISESNLL HHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHH TSFGFMNEKYVSNFGLLVPTRLSTSLNNVKAKLFDLEALKKSQVLIKPQIYEIIIGTPSL HHHCCCCHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCEEECCEEEEEEEECCCC SDPTLTDTSVKRLRETIDMVTEVAASEDIKLFRAENAREAAIHINKIAA CCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHEEEHHHCC >Mature Secondary Structure MNTLEELFPSEPTFFGTWQTLYLEPIVGSGERISVAVVAIGNNNQYGIIQAIRSELLECL CCCHHHHCCCCCCEEECEEEEEEEECCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHH YGSQSQNMQSIIDWLIESASNELKLHRSLSEWTAPFGGVILGSIHPAADDSIEGILKQAI CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHH RFTASLSTLALDAEREEDEFQSKRYSEQWATSIFDEIKTINPNLSNCFKKRLKISESNLL HHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHH TSFGFMNEKYVSNFGLLVPTRLSTSLNNVKAKLFDLEALKKSQVLIKPQIYEIIIGTPSL HHHCCCCHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCEEECCEEEEEEEECCCC SDPTLTDTSVKRLRETIDMVTEVAASEDIKLFRAENAREAAIHINKIAA CCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHEEEHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA