Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775913

Identifier: 119775913

GI number: 119775913

Start: 3323531

End: 3324292

Strand: Reverse

Name: 119775913

Synonym: Sama_2781

Alternate gene names: NA

Gene position: 3324292-3323531 (Counterclockwise)

Preceding gene: 119775914

Following gene: 119775912

Centisome position: 77.2

GC content: 34.51

Gene sequence:

>762_bases
ATGGAACAAGTAAAAATAGGATTGATGCTTCCTGGAGCTACATTCTTTAATGATCATAATGTAAACCCTACATGGAAAGG
TCATGTTAAAACACATGATTCAGTAGTGGTTGCATATGTAAAAAAAGTTACAGTTCAAGAGCTTTATGCCGAATGTGTAT
GCGCTGTAATAGGTCGTTCACTTGGATTATCCATTCCAAAACCTATTATTGTTAAGGTTACGCATACCGTTTTTGAAGAA
ATTCCTGAAGGTGAATATGCTTTAGCATTTGGATCTGAAGATGCAGGTTATCCAAGTTTTCGAAGGTACTCCAAAAGTGA
AGAGGCATTAGAAAAGCTCAAAAACTACTCAAGAGTATTAGATATTGGTGTTTTTGATGAGTGGATCGCCAACTGGGACA
GAAATGTAGGAAACATACTTTATGATGGCGGTGATAAATTTTCTTTCATAGACCATGAAAATGCTTTGGACCTATCTTTA
GATGAAAGTGACTCAGCTAAAGATAACCAAATCATTAGAGTTATATATTCATTAAAAAGTGAATTTGAGAAACATAAAAT
TATTAGAGATATTGACGTAGGAATAACTCGCCAGTACAAAGAGTTTCCTTTTTCTCTGATTTCAGAAAAAACCTATGCCA
GTTCTTACTTATCCCAAGAGCAGATTATAAAGGTTATAGGGTTTCTTGAGAAAAGAACTGAGCACATTAAAATATTAATG
AATCGAAGACTGGGAATTCAACAACAGGAGATGGCGTTATGA

Upstream 100 bases:

>100_bases
AACGCTCAGTACAACAGGCGGATACAAACGCGCATGCGCACGATACAGTTGTTAGATTTCTACAAACAAATGTAGGTTCA
TCAAAAGTAAAGGATTATGA

Downstream 100 bases:

>100_bases
ATACATTAGAAGAGCTATTTCCATCTGAACCTACATTTTTTGGCACATGGCAAACTCTTTATTTAGAACCTATTGTTGGT
TCTGGAGAAAGAATATCTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MEQVKIGLMLPGATFFNDHNVNPTWKGHVKTHDSVVVAYVKKVTVQELYAECVCAVIGRSLGLSIPKPIIVKVTHTVFEE
IPEGEYALAFGSEDAGYPSFRRYSKSEEALEKLKNYSRVLDIGVFDEWIANWDRNVGNILYDGGDKFSFIDHENALDLSL
DESDSAKDNQIIRVIYSLKSEFEKHKIIRDIDVGITRQYKEFPFSLISEKTYASSYLSQEQIIKVIGFLEKRTEHIKILM
NRRLGIQQQEMAL

Sequences:

>Translated_253_residues
MEQVKIGLMLPGATFFNDHNVNPTWKGHVKTHDSVVVAYVKKVTVQELYAECVCAVIGRSLGLSIPKPIIVKVTHTVFEE
IPEGEYALAFGSEDAGYPSFRRYSKSEEALEKLKNYSRVLDIGVFDEWIANWDRNVGNILYDGGDKFSFIDHENALDLSL
DESDSAKDNQIIRVIYSLKSEFEKHKIIRDIDVGITRQYKEFPFSLISEKTYASSYLSQEQIIKVIGFLEKRTEHIKILM
NRRLGIQQQEMAL
>Mature_253_residues
MEQVKIGLMLPGATFFNDHNVNPTWKGHVKTHDSVVVAYVKKVTVQELYAECVCAVIGRSLGLSIPKPIIVKVTHTVFEE
IPEGEYALAFGSEDAGYPSFRRYSKSEEALEKLKNYSRVLDIGVFDEWIANWDRNVGNILYDGGDKFSFIDHENALDLSL
DESDSAKDNQIIRVIYSLKSEFEKHKIIRDIDVGITRQYKEFPFSLISEKTYASSYLSQEQIIKVIGFLEKRTEHIKILM
NRRLGIQQQEMAL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28957; Mature: 28957

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQVKIGLMLPGATFFNDHNVNPTWKGHVKTHDSVVVAYVKKVTVQELYAECVCAVIGRS
CCCEEEEEEECCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGLSIPKPIIVKVTHTVFEEIPEGEYALAFGSEDAGYPSFRRYSKSEEALEKLKNYSRVL
HCCCCCCCCEEEEHHHHHHHCCCCCEEEEECCCCCCCCHHHHHCCHHHHHHHHHHHHHHH
DIGVFDEWIANWDRNVGNILYDGGDKFSFIDHENALDLSLDESDSAKDNQIIRVIYSLKS
HCCHHHHHHHHHCCCCCCEEECCCCEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHH
EFEKHKIIRDIDVGITRQYKEFPFSLISEKTYASSYLSQEQIIKVIGFLEKRTEHIKILM
HHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
NRRLGIQQQEMAL
HHCCCCCHHHHCC
>Mature Secondary Structure
MEQVKIGLMLPGATFFNDHNVNPTWKGHVKTHDSVVVAYVKKVTVQELYAECVCAVIGRS
CCCEEEEEEECCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGLSIPKPIIVKVTHTVFEEIPEGEYALAFGSEDAGYPSFRRYSKSEEALEKLKNYSRVL
HCCCCCCCCEEEEHHHHHHHCCCCCEEEEECCCCCCCCHHHHHCCHHHHHHHHHHHHHHH
DIGVFDEWIANWDRNVGNILYDGGDKFSFIDHENALDLSLDESDSAKDNQIIRVIYSLKS
HCCHHHHHHHHHCCCCCCEEECCCCEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHH
EFEKHKIIRDIDVGITRQYKEFPFSLISEKTYASSYLSQEQIIKVIGFLEKRTEHIKILM
HHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
NRRLGIQQQEMAL
HHCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA