| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is pgk [H]
Identifier: 119775889
GI number: 119775889
Start: 3296451
End: 3297632
Strand: Reverse
Name: pgk [H]
Synonym: Sama_2757
Alternate gene names: 119775889
Gene position: 3297632-3296451 (Counterclockwise)
Preceding gene: 119775890
Following gene: 119775888
Centisome position: 76.58
GC content: 58.04
Gene sequence:
>1182_bases ATGACAATTATCAAAATGTCAGACCTGGATCTTAACGGCAAGCGCGTGCTTATCCGTGAAGATCTGAACGTGCCTGTGGC CGATGGCGTTGTCACCAGCGACGCCCGTCTGCGCGCCTCTCTGCCCACCATTAAGCTGGCGCTGGAAAAAGGCGCTGCGG TAATGGTGATGTCTCACCTGGGCCGCCCGACCGAAGGTGAATACAACGAAGAGTTCTCCATGAAGCCTGTGGTGAACTAC CTGACTGCCGCACTGGATTGCCCTGTGCGTCTGGTCAGCGACTACCTCGATGGCGTTGATGTGGCCGTTGGCGAAGTGGT GGTGTTCGAAAACGTGCGCTTCAACAAAGGCGAGAAGAAGAACGATGAGGCACTGTCGAAGAAGATGGCAGCCCTGTGTG ACGTTTACGTGATGGATGCCTTCGGTACCGCACACCGCGCCGAAGCCTCCACCAACGGTGTAGGCCTGTATGCCCCCATC GCCTGCGCAGGTCCGCTGCTTGCTGCTGAGCTTGATGCTCTCGGTAAGGCGCTGGATAACCCAGCCCGTCCGCTGGTGGC CATTGTGGGTGGCTCCAAGGTATCAACCAAGCTGACCGTGCTCGAGTCACTTTCCGGCATCGTTGACCAGTTGGTGGTTG GCGGCGGTATCGCCAACACCTTTATTGCTGCAGCCGGTAATCAGGTAGGCAAGTCGCTGTATGAAGCCGACCTGATTGAT GAAGCCAAGCGTCTGGTGGCCAATGCCCAAAGCCGCGGCGGCGATATCCCTGTGCCTACCGATGTGGTTGTCGGTAAAGA GTTCAGCCCAACTGCGGTAGCTACCCTGAAAAACGTCAGCGATGTGGCCGCAGACGATATGATTTTCGATATTGGCCCCG ACAGTGCCGAGGCCCTGGCCGCCATCCTCAAGAATGCCGGCACCATAGTCTGGAACGGCCCTGTAGGCGTGTTCGAGTTT GACCAGTTCGGTGAAGGCACCAAGCGCATCGCCCAGGCCATTGCTGAGTCCTCTGCTTTCTCTATCGCCGGTGGTGGCGA TACTTTGGCGGCCGTGGATAAATACGGTATCGCCGACAAGGTGTCTTACATCTCTACCGGTGGTGGCGCCTTCCTTGAGT TCCTCGAAGGCAAGGAGCTGCCTGCCGTGGCCATGCTCACCGCCCGTGGCGCCAAGGCTTAA
Upstream 100 bases:
>100_bases GGCCACACAGGCTGAATGACCCTACAGGATAATGAAGAAGAGCAGGGACAAGCTTTTCTCACAAGAATTTGTTTTTGATT AAAAATAAGGAAGCAATACC
Downstream 100 bases:
>100_bases CACAGCAACAAATTACTATTATTAGAAGAAACCGCCTCCCGGGAGACCGGGAGGCATAAAAATCAGTCCAAACGATAGCG ACCTCGGTGACCCACATTCA
Product: phosphoglycerate kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 393; Mature: 392
Protein sequence:
>393_residues MTIIKMSDLDLNGKRVLIREDLNVPVADGVVTSDARLRASLPTIKLALEKGAAVMVMSHLGRPTEGEYNEEFSMKPVVNY LTAALDCPVRLVSDYLDGVDVAVGEVVVFENVRFNKGEKKNDEALSKKMAALCDVYVMDAFGTAHRAEASTNGVGLYAPI ACAGPLLAAELDALGKALDNPARPLVAIVGGSKVSTKLTVLESLSGIVDQLVVGGGIANTFIAAAGNQVGKSLYEADLID EAKRLVANAQSRGGDIPVPTDVVVGKEFSPTAVATLKNVSDVAADDMIFDIGPDSAEALAAILKNAGTIVWNGPVGVFEF DQFGEGTKRIAQAIAESSAFSIAGGGDTLAAVDKYGIADKVSYISTGGGAFLEFLEGKELPAVAMLTARGAKA
Sequences:
>Translated_393_residues MTIIKMSDLDLNGKRVLIREDLNVPVADGVVTSDARLRASLPTIKLALEKGAAVMVMSHLGRPTEGEYNEEFSMKPVVNY LTAALDCPVRLVSDYLDGVDVAVGEVVVFENVRFNKGEKKNDEALSKKMAALCDVYVMDAFGTAHRAEASTNGVGLYAPI ACAGPLLAAELDALGKALDNPARPLVAIVGGSKVSTKLTVLESLSGIVDQLVVGGGIANTFIAAAGNQVGKSLYEADLID EAKRLVANAQSRGGDIPVPTDVVVGKEFSPTAVATLKNVSDVAADDMIFDIGPDSAEALAAILKNAGTIVWNGPVGVFEF DQFGEGTKRIAQAIAESSAFSIAGGGDTLAAVDKYGIADKVSYISTGGGAFLEFLEGKELPAVAMLTARGAKA >Mature_392_residues TIIKMSDLDLNGKRVLIREDLNVPVADGVVTSDARLRASLPTIKLALEKGAAVMVMSHLGRPTEGEYNEEFSMKPVVNYL TAALDCPVRLVSDYLDGVDVAVGEVVVFENVRFNKGEKKNDEALSKKMAALCDVYVMDAFGTAHRAEASTNGVGLYAPIA CAGPLLAAELDALGKALDNPARPLVAIVGGSKVSTKLTVLESLSGIVDQLVVGGGIANTFIAAAGNQVGKSLYEADLIDE AKRLVANAQSRGGDIPVPTDVVVGKEFSPTAVATLKNVSDVAADDMIFDIGPDSAEALAAILKNAGTIVWNGPVGVFEFD QFGEGTKRIAQAIAESSAFSIAGGGDTLAAVDKYGIADKVSYISTGGGAFLEFLEGKELPAVAMLTARGAKA
Specific function: Second phase of glycolysis; second step. [C]
COG id: COG0126
COG function: function code G; 3-phosphoglycerate kinase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoglycerate kinase family [H]
Homologues:
Organism=Homo sapiens, GI31543397, Length=412, Percent_Identity=39.3203883495146, Blast_Score=272, Evalue=4e-73, Organism=Homo sapiens, GI4505763, Length=412, Percent_Identity=38.1067961165049, Blast_Score=263, Evalue=2e-70, Organism=Escherichia coli, GI1789294, Length=392, Percent_Identity=75.5102040816327, Blast_Score=586, Evalue=1e-169, Organism=Caenorhabditis elegans, GI17508823, Length=414, Percent_Identity=41.304347826087, Blast_Score=289, Evalue=2e-78, Organism=Saccharomyces cerevisiae, GI6319857, Length=414, Percent_Identity=41.304347826087, Blast_Score=285, Evalue=8e-78, Organism=Drosophila melanogaster, GI17136394, Length=412, Percent_Identity=41.0194174757282, Blast_Score=263, Evalue=1e-70, Organism=Drosophila melanogaster, GI24581203, Length=412, Percent_Identity=38.3495145631068, Blast_Score=253, Evalue=2e-67,
Paralogues:
None
Copy number: 2990 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1460 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001576 - InterPro: IPR015901 - InterPro: IPR015911 - InterPro: IPR015824 [H]
Pfam domain/function: PF00162 PGK [H]
EC number: =2.7.2.3 [H]
Molecular weight: Translated: 40821; Mature: 40690
Theoretical pI: Translated: 4.47; Mature: 4.47
Prosite motif: PS00111 PGLYCERATE_KINASE ; PS00678 WD_REPEATS_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIIKMSDLDLNGKRVLIREDLNVPVADGVVTSDARLRASLPTIKLALEKGAAVMVMSHL CEEEEEECCCCCCCEEEEEECCCCCCCCCEEECCCHHEECCCEEEEEHHCCCEEEHHHHC GRPTEGEYNEEFSMKPVVNYLTAALDCPVRLVSDYLDGVDVAVGEVVVFENVRFNKGEKK CCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHCCEEEEECCCCCCCCCC NDEALSKKMAALCDVYVMDAFGTAHRAEASTNGVGLYAPIACAGPLLAAELDALGKALDN CHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEHHHHCCHHHHHHHHHHHHHHCC PARPLVAIVGGSKVSTKLTVLESLSGIVDQLVVGGGIANTFIAAAGNQVGKSLYEADLID CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHH EAKRLVANAQSRGGDIPVPTDVVVGKEFSPTAVATLKNVSDVAADDMIFDIGPDSAEALA HHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHH AILKNAGTIVWNGPVGVFEFDQFGEGTKRIAQAIAESSAFSIAGGGDTLAAVDKYGIADK HHHHCCCEEEECCCCCEEECHHCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHCCCHHH VSYISTGGGAFLEFLEGKELPAVAMLTARGAKA HHHEECCCHHHHHHHCCCCCCEEEEEECCCCCC >Mature Secondary Structure TIIKMSDLDLNGKRVLIREDLNVPVADGVVTSDARLRASLPTIKLALEKGAAVMVMSHL EEEEEECCCCCCCEEEEEECCCCCCCCCEEECCCHHEECCCEEEEEHHCCCEEEHHHHC GRPTEGEYNEEFSMKPVVNYLTAALDCPVRLVSDYLDGVDVAVGEVVVFENVRFNKGEKK CCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHCCEEEEECCCCCCCCCC NDEALSKKMAALCDVYVMDAFGTAHRAEASTNGVGLYAPIACAGPLLAAELDALGKALDN CHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEHHHHCCHHHHHHHHHHHHHHCC PARPLVAIVGGSKVSTKLTVLESLSGIVDQLVVGGGIANTFIAAAGNQVGKSLYEADLID CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHH EAKRLVANAQSRGGDIPVPTDVVVGKEFSPTAVATLKNVSDVAADDMIFDIGPDSAEALA HHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHH AILKNAGTIVWNGPVGVFEFDQFGEGTKRIAQAIAESSAFSIAGGGDTLAAVDKYGIADK HHHHCCCEEEECCCCCEEECHHCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHCCCHHH VSYISTGGGAFLEFLEGKELPAVAMLTARGAKA HHHEECCCHHHHHHHCCCCCCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA