| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775812
Identifier: 119775812
GI number: 119775812
Start: 3209177
End: 3210439
Strand: Reverse
Name: 119775812
Synonym: Sama_2680
Alternate gene names: NA
Gene position: 3210439-3209177 (Counterclockwise)
Preceding gene: 119775818
Following gene: 119775811
Centisome position: 74.55
GC content: 58.12
Gene sequence:
>1263_bases ATGCCGCGTTCGCCGAGCAGCCAGTATCTGGCGATAGAAAGCCTGAGTCGTTATGCCCGGGAAGAGCGTGAATCCGCTCT GGGCATTATCCGTAATGTGCTGCAGATGTCAGACATAGCGCCGGGCCGATTCAATGCCGCCATGCAGGCTGTGGCCATGC ATGGGCGAATTGCTTTGCACTTTCATCCGGACAGGTTTGATTCCCGGGGACTGACGGTGGCCGAAGGCCTGTTGCAGGAC GGCCGCTATCGTTGCCAGTTTGAAACCCACATTTCGTCCGGTCTGCTTTCGCCTGAGATTGGCGGTGCCCGTGATCACTG GGAGCGGCAATTTTTCCGTGAGCTCACCACAGATATTGCTGCCCGTCCCAAGTATGGCGCCCTCGATTTACTGCTCGCCC CCAATGGCCCTGCGCCGCGTTTTGGCAGCTGCTATTTCCTGACCAAGCCGGAGGTGCTGTCTCGGGCAACCTTTTGTTTT AACGATTCTTACCGCAATCCCCGTGACAAGGGCACAGCCGATGCCTTTGAGATGGTGATGGCCGCCTTGCTGACCGAAAG TTTCGAGCGTCGTTACGCCTTGGGTGAGCATGGCCTGGCACCGGCCAAACTGGTGGAAAGGCTTGTCTCGACTCTGGGTG AAGATATCGTGATGAGGTTTGAGCGCGGCTTGTCGGGCAACCTGGATCACTATATCGAAGCCCAGATCCACGGGCCGCTG TCGCTTGCTGAAGACATGGAGGCACTGGTGGCCGATCCCAGTTTCAGAGGCACTGAGATTGAACCCTTGCTGCGCTCGAT TGCAGAACGTTATCAGATAGCCCTTTATTGGCATTCAGGCCTCTGCCTGGATGTGGAGCATGTGGTGCGGGATTTTCGCG GTGCTGGCATGCCGTCGCTGGCCCAGCGACTTGCCATCGATGGTAACGTTACGGCCTATGCCATCGGCGTTGCCGCACGG GAAGTCAGTCGTTTCCCAACCCGCTGGCGCGCACGAGGCCACAAAACCGAGGTGCTCAGCGAACTTAAATGGTTGTGGCA TCTGTTGGTGCGTTACGGCGCCGCGCGGGATGAGCGTGAGACATCGTTTATGCTTGATGAGTCAGCACCGCTGCAGGAAA ATGTTCAGGCCGAGCCTGGGGGCAATGACGCTACCTGCGTCCAGGGGACATGCAAAGAAGAGGGCTTTGAGGCATCGGTA ACCACAGAGGGGGCTCACACCGCGGACGCGGCTGCTGCCGTCAAAGACAATTCAGCGAGCTGA
Upstream 100 bases:
>100_bases TGCTTCCCATTAAAGGCTGTTAATTTAGATGGAGAGCCAGCGGCCGCTCTGCTATCTTTGCAGTGTTTTCAACCTTTTCC GGCCAGCCACAAGGAGCATG
Downstream 100 bases:
>100_bases ATGCCTGCCCAAGGTGGAAAGCCATTTCCCTGCCAGTGCTTAGAAACCACCGCCAACCCGCCACATAAGAGGTTGGCTTA ATCCAGACTTAAGCGTTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 420; Mature: 419
Protein sequence:
>420_residues MPRSPSSQYLAIESLSRYAREERESALGIIRNVLQMSDIAPGRFNAAMQAVAMHGRIALHFHPDRFDSRGLTVAEGLLQD GRYRCQFETHISSGLLSPEIGGARDHWERQFFRELTTDIAARPKYGALDLLLAPNGPAPRFGSCYFLTKPEVLSRATFCF NDSYRNPRDKGTADAFEMVMAALLTESFERRYALGEHGLAPAKLVERLVSTLGEDIVMRFERGLSGNLDHYIEAQIHGPL SLAEDMEALVADPSFRGTEIEPLLRSIAERYQIALYWHSGLCLDVEHVVRDFRGAGMPSLAQRLAIDGNVTAYAIGVAAR EVSRFPTRWRARGHKTEVLSELKWLWHLLVRYGAARDERETSFMLDESAPLQENVQAEPGGNDATCVQGTCKEEGFEASV TTEGAHTADAAAAVKDNSAS
Sequences:
>Translated_420_residues MPRSPSSQYLAIESLSRYAREERESALGIIRNVLQMSDIAPGRFNAAMQAVAMHGRIALHFHPDRFDSRGLTVAEGLLQD GRYRCQFETHISSGLLSPEIGGARDHWERQFFRELTTDIAARPKYGALDLLLAPNGPAPRFGSCYFLTKPEVLSRATFCF NDSYRNPRDKGTADAFEMVMAALLTESFERRYALGEHGLAPAKLVERLVSTLGEDIVMRFERGLSGNLDHYIEAQIHGPL SLAEDMEALVADPSFRGTEIEPLLRSIAERYQIALYWHSGLCLDVEHVVRDFRGAGMPSLAQRLAIDGNVTAYAIGVAAR EVSRFPTRWRARGHKTEVLSELKWLWHLLVRYGAARDERETSFMLDESAPLQENVQAEPGGNDATCVQGTCKEEGFEASV TTEGAHTADAAAAVKDNSAS >Mature_419_residues PRSPSSQYLAIESLSRYAREERESALGIIRNVLQMSDIAPGRFNAAMQAVAMHGRIALHFHPDRFDSRGLTVAEGLLQDG RYRCQFETHISSGLLSPEIGGARDHWERQFFRELTTDIAARPKYGALDLLLAPNGPAPRFGSCYFLTKPEVLSRATFCFN DSYRNPRDKGTADAFEMVMAALLTESFERRYALGEHGLAPAKLVERLVSTLGEDIVMRFERGLSGNLDHYIEAQIHGPLS LAEDMEALVADPSFRGTEIEPLLRSIAERYQIALYWHSGLCLDVEHVVRDFRGAGMPSLAQRLAIDGNVTAYAIGVAARE VSRFPTRWRARGHKTEVLSELKWLWHLLVRYGAARDERETSFMLDESAPLQENVQAEPGGNDATCVQGTCKEEGFEASVT TEGAHTADAAAAVKDNSAS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46590; Mature: 46459
Theoretical pI: Translated: 5.77; Mature: 5.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRSPSSQYLAIESLSRYAREERESALGIIRNVLQMSDIAPGRFNAAMQAVAMHGRIALH CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEEE FHPDRFDSRGLTVAEGLLQDGRYRCQFETHISSGLLSPEIGGARDHWERQFFRELTTDIA ECCCCCCCCCCHHHHHHHHCCCEEEEEEHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH ARPKYGALDLLLAPNGPAPRFGSCYFLTKPEVLSRATFCFNDSYRNPRDKGTADAFEMVM CCCCCCCEEEEECCCCCCCCCCCEEEEECHHHHHHHHHEECCCCCCCCCCCHHHHHHHHH AALLTESFERRYALGEHGLAPAKLVERLVSTLGEDIVMRFERGLSGNLDHYIEAQIHGPL HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCH SLAEDMEALVADPSFRGTEIEPLLRSIAERYQIALYWHSGLCLDVEHVVRDFRGAGMPSL HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHEEEEEECCCCEEEHHHHHHHHCCCCCHHH AQRLAIDGNVTAYAIGVAAREVSRFPTRWRARGHKTEVLSELKWLWHLLVRYGAARDERE HHHHHCCCCCEEEEHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC TSFMLDESAPLQENVQAEPGGNDATCVQGTCKEEGFEASVTTEGAHTADAAAAVKDNSAS HHEEECCCCCHHHCCCCCCCCCCCCEECCCHHCCCCEEEEECCCCCCHHHHHHCCCCCCC >Mature Secondary Structure PRSPSSQYLAIESLSRYAREERESALGIIRNVLQMSDIAPGRFNAAMQAVAMHGRIALH CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEEE FHPDRFDSRGLTVAEGLLQDGRYRCQFETHISSGLLSPEIGGARDHWERQFFRELTTDIA ECCCCCCCCCCHHHHHHHHCCCEEEEEEHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH ARPKYGALDLLLAPNGPAPRFGSCYFLTKPEVLSRATFCFNDSYRNPRDKGTADAFEMVM CCCCCCCEEEEECCCCCCCCCCCEEEEECHHHHHHHHHEECCCCCCCCCCCHHHHHHHHH AALLTESFERRYALGEHGLAPAKLVERLVSTLGEDIVMRFERGLSGNLDHYIEAQIHGPL HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCH SLAEDMEALVADPSFRGTEIEPLLRSIAERYQIALYWHSGLCLDVEHVVRDFRGAGMPSL HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHEEEEEECCCCEEEHHHHHHHHCCCCCHHH AQRLAIDGNVTAYAIGVAAREVSRFPTRWRARGHKTEVLSELKWLWHLLVRYGAARDERE HHHHHCCCCCEEEEHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC TSFMLDESAPLQENVQAEPGGNDATCVQGTCKEEGFEASVTTEGAHTADAAAAVKDNSAS HHEEECCCCCHHHCCCCCCCCCCCCEECCCHHCCCCEEEEECCCCCCHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA