| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775818
Identifier: 119775818
GI number: 119775818
Start: 3215152
End: 3215679
Strand: Reverse
Name: 119775818
Synonym: Sama_2686
Alternate gene names: NA
Gene position: 3215679-3215152 (Counterclockwise)
Preceding gene: 119775820
Following gene: 119775812
Centisome position: 74.68
GC content: 59.66
Gene sequence:
>528_bases ATGACACAAAAAATTCTCTCGCTGGCATTGGGTGCCCTGTTGATGTCTGGCTGCGGCTGGTTTGGGGGGGATGAAAAGGC GGCGATGGAGCAGGCCTGGCTTGCGCGTAATGCCGACATTCAGCAAGCGATTGAGCAAATTCGTGCCGAGGGGCTGGATG CTGTGGTGGTAAGCGCCGAAGCCGGGTCGGTGGCGGCCTGTGTGGCCAATAAACTTGCCGAAGACCCGCTGGGCGAGTTG GTAAACGTGGAAGGGGCGCTGGTGGAGTCGGCCAAGGTGGCTGAGTTGCTCGCCAATGTGCAGTCGATGATGGAACAGGA ATTTGATCTGCAAAATGCAGCTGCCCTCCTGCAGCAGGGCTCCGATGTGGCAGCCTATGCCAAGGCGCTGATTGAGCAGG AAGGGCTGGAAGGCGCTTCCCAAACATTGGCGCGCATGGCGAGCCAGGCTCAGGCTTTTGCCGGACAGGATCTGGGGCAA CACTTCAAGACCCTGATTGGCAGCTGCGAGACGACTGCCGGGACCTGA
Upstream 100 bases:
>100_bases GTTCATCCCCGTTTAAGGCGATTCTGGAACACTGTGGCAACACGGGGCAGCGCAGTTATTCATGCCTTGTTTATGGATAG TTGATTTAAAGGAAAAGGCA
Downstream 100 bases:
>100_bases CAGCTTCAAGCAGGAGACTGCAAGACGCTGTCTGACGGCTTTGGATTAACTCACGCTGGCGGGAATTCTGTCCGCCAGTG CTCGGGTATTCAAACTGACT
Product: putative lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 175; Mature: 174
Protein sequence:
>175_residues MTQKILSLALGALLMSGCGWFGGDEKAAMEQAWLARNADIQQAIEQIRAEGLDAVVVSAEAGSVAACVANKLAEDPLGEL VNVEGALVESAKVAELLANVQSMMEQEFDLQNAAALLQQGSDVAAYAKALIEQEGLEGASQTLARMASQAQAFAGQDLGQ HFKTLIGSCETTAGT
Sequences:
>Translated_175_residues MTQKILSLALGALLMSGCGWFGGDEKAAMEQAWLARNADIQQAIEQIRAEGLDAVVVSAEAGSVAACVANKLAEDPLGEL VNVEGALVESAKVAELLANVQSMMEQEFDLQNAAALLQQGSDVAAYAKALIEQEGLEGASQTLARMASQAQAFAGQDLGQ HFKTLIGSCETTAGT >Mature_174_residues TQKILSLALGALLMSGCGWFGGDEKAAMEQAWLARNADIQQAIEQIRAEGLDAVVVSAEAGSVAACVANKLAEDPLGELV NVEGALVESAKVAELLANVQSMMEQEFDLQNAAALLQQGSDVAAYAKALIEQEGLEGASQTLARMASQAQAFAGQDLGQH FKTLIGSCETTAGT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18156; Mature: 18024
Theoretical pI: Translated: 3.95; Mature: 3.95
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQKILSLALGALLMSGCGWFGGDEKAAMEQAWLARNADIQQAIEQIRAEGLDAVVVSAE CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECC AGSVAACVANKLAEDPLGELVNVEGALVESAKVAELLANVQSMMEQEFDLQNAAALLQQG CCHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SDVAAYAKALIEQEGLEGASQTLARMASQAQAFAGQDLGQHFKTLIGSCETTAGT CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure TQKILSLALGALLMSGCGWFGGDEKAAMEQAWLARNADIQQAIEQIRAEGLDAVVVSAE HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECC AGSVAACVANKLAEDPLGELVNVEGALVESAKVAELLANVQSMMEQEFDLQNAAALLQQG CCHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SDVAAYAKALIEQEGLEGASQTLARMASQAQAFAGQDLGQHFKTLIGSCETTAGT CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA