Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119774661

Identifier: 119774661

GI number: 119774661

Start: 1853621

End: 1855477

Strand: Direct

Name: 119774661

Synonym: Sama_1524

Alternate gene names: NA

Gene position: 1853621-1855477 (Clockwise)

Preceding gene: 119774660

Following gene: 119774662

Centisome position: 43.05

GC content: 54.23

Gene sequence:

>1857_bases
ATGATTTGTATGGATGCCAGCGAAATTCAGCCCCTAACCCAGTTTCTCAGGCAATTGGTCCCTTTTGACTCTCTTTCGGA
TGCTTCTTTGCTGGCCTGTGTGCGGCATCTGAGTGTGGCTTACTACAGTAAATCCATGGGCCATGTTCCCCTTGATGAAT
CCCATCCAAGGCTCTACATAGTGCGTAGCGGTGCTTTTGAAGTGCGTGATGAAGAGGGGGAGCTGGTTGACCGCCTGGGG
GAAGGGGATTTCTTTGGTTTCCCGTCTTTGCTCAGTGGTGAGGCGATTTCCAATAAGGTGGCCATTCTCGAAGATGGTCT
GGTGTATCAACTCAGTCCAGATATGTTCAACAGCTTACGGCAGGAAAGCCGTGAATTTGACCGCTTTTTTAACCGTGCTT
TTGCCAAAAGGCTGCGCCATCAGGGCAGATTCAAGGCCAAGGAACTCACCACCACGAGCCGCATCAGCTCACTGATGACG
GGTTCGCCGCTCACCATAGATTGCAACCACAGCATACGTCAGGCGGCGGTGATGATGCGGGACGCTCGGGTGTCGTCGCT
GCTGGTGACAGACCATCACAAACTCTGCGGCATTCTTACTGACAGAGACTTGCGTAACCGGGTGCTCGCCGAAGGTTTTG
ACGGCACACTGCCGGTGCATCAGGCCATGACCCGAAACCCGGTGACCATAGGGGCTGGGGCCTTGGTATTTGAGGCCATG
CTCGCCATGAGCGAGCGCAATATCCATCATTTGCCTGTGCTCGAAGGGGACACGCCGGTGGGGGTGATATCCAGCACCGA
CATTCTGCGAAGTCAGGGCTCGCAACCGTTAATGCTGATTGGCGAAATAGAGCGTCAAAAGGATGTGGCCAGTTTGATTT
CAGTCAGCAAAAAAATCCCTGAACTGCTTCAAAGCCTTATCAGTGCCGATGCCAGAGCCGAAGAAATTGGCCGGGTGTTG
ACGTCGGTGACAGACGCCCTGACCAGAAGGCTGATATTACTGAATCAGCAGATTTTGGGGCAGGCGCCCATGGCATTTTG
CTGGCTCGCATTTGGCTCCCAGGGGCGCCAGGATCAGGCCGCCTGCTCAGACCAGGATAATGGGTTGCTGCTTGCTGGTG
AGCCTGACGAGCATGCCGCCGGCTATTTTGAGGCGCTGAGCCGCGCCGTTTGCAGTGGGCTTGATGAGTGCGGATACCGT
TTTTGTCCGGGCGATATCATGGCGCAAAATCCCAAATGGCGCATGTCACTGGCACGCTGGCAACAGGTGTTTGACAACTG
GGTTAAGGCGCCTGAGCCCAAGGCCTTGATGCACGCCTCGATATTTTTCGATATGCGGCCCGTGTTTGGTCCTCAAAGCC
TGTTCGATGCGCTGCAGGACAAGGTGCTTGCCGGAACTAGGGACAATGACATTTTTCTCGCCGGCATGGCGGGTAACAGC
CTTACCGAGGCACCGCCCCTGGGGTTCTTTCGCAAGTTTGTACTTGAGCGGGACGGCTCCGAGGTAAAAGGCATAGATTT
AAAGCACAAAGGCAATGCTCTGATTAATGACATTGCCCGTGTATATGCGTTGTCAGCCGGCATCAAGGAGGTGAATACCG
CCAAGCGTATTCGCGCCCTGATGGAGCTGGGTGTGATTGGCCGCAAAGATGCGCTTAATCTCGCCGATGCCCACGAATTT
ATTGCCCATATGCGTCTTGCCAATCAGGGCGTGCAACACCGACAAGGTCAGGAAATCAGTAACTACCTCAAGCCACAGCA
GCTGTCTTCTCTGGTTCGCCACCAACTGCGGGATGCATTCAAAGTTGTGCATGATGCCCAGTCGGGGCTCAGGCTTAAAT
TTATGCGGAGCTTTTAA

Upstream 100 bases:

>100_bases
GTTTTTCTTTATGGATGCAGGATTTTACTTAGGTCGAATGGTGACATTGAACGCGGCTGCCTTATAGTGGATGCACAAGG
CGTAAATTTGCACTAAGCGG

Downstream 100 bases:

>100_bases
TGGTTTCCCGGGCTTTTTTACGCCCGCGCCTGTGGTGGCGCAGCCGTACTCTTGACGATGGTCTTGCCCGCACCCTGGTA
GACAGCCAGAGAGCACTGCT

Product: CBS domain-containing protein

Products: NA

Alternate protein names: Signal-Transduction Protein; Nucleotidyltransferase; Signal Transduction Protein With CBS Domains; Signal Transduction Protein; Signal-Transduction Protein With CBS Domains; Nucleotidyltransferase Family; Signal Protein; CBS Domain Protein; Inosine-5-Monophosphate Dehydrogenase; Nucleotidyltransferase Domain Family Protein; Cyclic-Nucleotide Signal Transduction Protein; DNA Polymerase III Subunit Epsilon; Multidomain-Containing Protein; CBS Signal-Transduction Protein; Cyclic Nucleotide-Regulated Nucleotidyltransferase; Methyl-Accepting Chemotaxis Protein A; Nucleotidyltransferases

Number of amino acids: Translated: 618; Mature: 618

Protein sequence:

>618_residues
MICMDASEIQPLTQFLRQLVPFDSLSDASLLACVRHLSVAYYSKSMGHVPLDESHPRLYIVRSGAFEVRDEEGELVDRLG
EGDFFGFPSLLSGEAISNKVAILEDGLVYQLSPDMFNSLRQESREFDRFFNRAFAKRLRHQGRFKAKELTTTSRISSLMT
GSPLTIDCNHSIRQAAVMMRDARVSSLLVTDHHKLCGILTDRDLRNRVLAEGFDGTLPVHQAMTRNPVTIGAGALVFEAM
LAMSERNIHHLPVLEGDTPVGVISSTDILRSQGSQPLMLIGEIERQKDVASLISVSKKIPELLQSLISADARAEEIGRVL
TSVTDALTRRLILLNQQILGQAPMAFCWLAFGSQGRQDQAACSDQDNGLLLAGEPDEHAAGYFEALSRAVCSGLDECGYR
FCPGDIMAQNPKWRMSLARWQQVFDNWVKAPEPKALMHASIFFDMRPVFGPQSLFDALQDKVLAGTRDNDIFLAGMAGNS
LTEAPPLGFFRKFVLERDGSEVKGIDLKHKGNALINDIARVYALSAGIKEVNTAKRIRALMELGVIGRKDALNLADAHEF
IAHMRLANQGVQHRQGQEISNYLKPQQLSSLVRHQLRDAFKVVHDAQSGLRLKFMRSF

Sequences:

>Translated_618_residues
MICMDASEIQPLTQFLRQLVPFDSLSDASLLACVRHLSVAYYSKSMGHVPLDESHPRLYIVRSGAFEVRDEEGELVDRLG
EGDFFGFPSLLSGEAISNKVAILEDGLVYQLSPDMFNSLRQESREFDRFFNRAFAKRLRHQGRFKAKELTTTSRISSLMT
GSPLTIDCNHSIRQAAVMMRDARVSSLLVTDHHKLCGILTDRDLRNRVLAEGFDGTLPVHQAMTRNPVTIGAGALVFEAM
LAMSERNIHHLPVLEGDTPVGVISSTDILRSQGSQPLMLIGEIERQKDVASLISVSKKIPELLQSLISADARAEEIGRVL
TSVTDALTRRLILLNQQILGQAPMAFCWLAFGSQGRQDQAACSDQDNGLLLAGEPDEHAAGYFEALSRAVCSGLDECGYR
FCPGDIMAQNPKWRMSLARWQQVFDNWVKAPEPKALMHASIFFDMRPVFGPQSLFDALQDKVLAGTRDNDIFLAGMAGNS
LTEAPPLGFFRKFVLERDGSEVKGIDLKHKGNALINDIARVYALSAGIKEVNTAKRIRALMELGVIGRKDALNLADAHEF
IAHMRLANQGVQHRQGQEISNYLKPQQLSSLVRHQLRDAFKVVHDAQSGLRLKFMRSF
>Mature_618_residues
MICMDASEIQPLTQFLRQLVPFDSLSDASLLACVRHLSVAYYSKSMGHVPLDESHPRLYIVRSGAFEVRDEEGELVDRLG
EGDFFGFPSLLSGEAISNKVAILEDGLVYQLSPDMFNSLRQESREFDRFFNRAFAKRLRHQGRFKAKELTTTSRISSLMT
GSPLTIDCNHSIRQAAVMMRDARVSSLLVTDHHKLCGILTDRDLRNRVLAEGFDGTLPVHQAMTRNPVTIGAGALVFEAM
LAMSERNIHHLPVLEGDTPVGVISSTDILRSQGSQPLMLIGEIERQKDVASLISVSKKIPELLQSLISADARAEEIGRVL
TSVTDALTRRLILLNQQILGQAPMAFCWLAFGSQGRQDQAACSDQDNGLLLAGEPDEHAAGYFEALSRAVCSGLDECGYR
FCPGDIMAQNPKWRMSLARWQQVFDNWVKAPEPKALMHASIFFDMRPVFGPQSLFDALQDKVLAGTRDNDIFLAGMAGNS
LTEAPPLGFFRKFVLERDGSEVKGIDLKHKGNALINDIARVYALSAGIKEVNTAKRIRALMELGVIGRKDALNLADAHEF
IAHMRLANQGVQHRQGQEISNYLKPQQLSSLVRHQLRDAFKVVHDAQSGLRLKFMRSF

Specific function: Unknown

COG id: COG2905

COG function: function code T; Predicted signal-transduction protein containing cAMP-binding and CBS domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 68673; Mature: 68673

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: PS50042 CNMP_BINDING_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MICMDASEIQPLTQFLRQLVPFDSLSDASLLACVRHLSVAYYSKSMGHVPLDESHPRLYI
CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
VRSGAFEVRDEEGELVDRLGEGDFFGFPSLLSGEAISNKVAILEDGLVYQLSPDMFNSLR
EECCCEEEECCCHHHHHHCCCCCCCCCCHHHCCCHHCCCEEEEECCEEEEECHHHHHHHH
QESREFDRFFNRAFAKRLRHQGRFKAKELTTTSRISSLMTGSPLTIDCNHSIRQAAVMMR
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHH
DARVSSLLVTDHHKLCGILTDRDLRNRVLAEGFDGTLPVHQAMTRNPVTIGAGALVFEAM
HHHHHHHHEECCHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHCCCCCEECHHHHHHHHH
LAMSERNIHHLPVLEGDTPVGVISSTDILRSQGSQPLMLIGEIERQKDVASLISVSKKIP
HHHHCCCCCCCCEECCCCCCEEECCHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHH
ELLQSLISADARAEEIGRVLTSVTDALTRRLILLNQQILGQAPMAFCWLAFGSQGRQDQA
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHH
ACSDQDNGLLLAGEPDEHAAGYFEALSRAVCSGLDECGYRFCPGDIMAQNPKWRMSLARW
CCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCHHHCCCEECCCHHHCCCCHHHHHHHHH
QQVFDNWVKAPEPKALMHASIFFDMRPVFGPQSLFDALQDKVLAGTRDNDIFLAGMAGNS
HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
LTEAPPLGFFRKFVLERDGSEVKGIDLKHKGNALINDIARVYALSAGIKEVNTAKRIRAL
CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
MELGVIGRKDALNLADAHEFIAHMRLANQGVQHRQGQEISNYLKPQQLSSLVRHQLRDAF
HHHCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCCHHHHHHCCHHHHHHHHHHHHHHHH
KVVHDAQSGLRLKFMRSF
HHHHHHHCCCEEHHHHCC
>Mature Secondary Structure
MICMDASEIQPLTQFLRQLVPFDSLSDASLLACVRHLSVAYYSKSMGHVPLDESHPRLYI
CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
VRSGAFEVRDEEGELVDRLGEGDFFGFPSLLSGEAISNKVAILEDGLVYQLSPDMFNSLR
EECCCEEEECCCHHHHHHCCCCCCCCCCHHHCCCHHCCCEEEEECCEEEEECHHHHHHHH
QESREFDRFFNRAFAKRLRHQGRFKAKELTTTSRISSLMTGSPLTIDCNHSIRQAAVMMR
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHH
DARVSSLLVTDHHKLCGILTDRDLRNRVLAEGFDGTLPVHQAMTRNPVTIGAGALVFEAM
HHHHHHHHEECCHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHCCCCCEECHHHHHHHHH
LAMSERNIHHLPVLEGDTPVGVISSTDILRSQGSQPLMLIGEIERQKDVASLISVSKKIP
HHHHCCCCCCCCEECCCCCCEEECCHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHH
ELLQSLISADARAEEIGRVLTSVTDALTRRLILLNQQILGQAPMAFCWLAFGSQGRQDQA
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHH
ACSDQDNGLLLAGEPDEHAAGYFEALSRAVCSGLDECGYRFCPGDIMAQNPKWRMSLARW
CCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCHHHCCCEECCCHHHCCCCHHHHHHHHH
QQVFDNWVKAPEPKALMHASIFFDMRPVFGPQSLFDALQDKVLAGTRDNDIFLAGMAGNS
HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
LTEAPPLGFFRKFVLERDGSEVKGIDLKHKGNALINDIARVYALSAGIKEVNTAKRIRAL
CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
MELGVIGRKDALNLADAHEFIAHMRLANQGVQHRQGQEISNYLKPQQLSSLVRHQLRDAF
HHHCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCCHHHHHHCCHHHHHHHHHHHHHHHH
KVVHDAQSGLRLKFMRSF
HHHHHHHCCCEEHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA