Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
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Accession | NC_008700 |
Length | 4,306,142 |
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The map label for this gene is 119774549
Identifier: 119774549
GI number: 119774549
Start: 1715337
End: 1715909
Strand: Direct
Name: 119774549
Synonym: Sama_1412
Alternate gene names: NA
Gene position: 1715337-1715909 (Clockwise)
Preceding gene: 119774548
Following gene: 119774553
Centisome position: 39.83
GC content: 53.05
Gene sequence:
>573_bases ATGAAAACCACTCTGACCCGTGGACTGATGAACGTATTGCCCATGGCACTTAGCCTGTGGCTTTTCTGGTCGCTATTCGT GTCGCTGGATGAGTTGGGTGTCTTGCTGCTGGAGTTGGTGGGCTTACCCAAGCTGTTTGTGGGTGAGGGCTTCTTGCTGG TGATAGCCCTGGTATTCTCTGCCGGCTTGCTGTTTTCCGTCAGCCCCATCCAATGGATATGGGGCAAGGTTGAGCGCGCG CTGATGCGCTTTCCACTGTTTAAGTCTGTGTATGGCAGTATCAGAGACATAGCGTCTTTGATGAACCGTGATGGCAAGCC AAAGGATCAGCAGGTGGTACTGGTCAAACAGGCCAATGGCGGATACGTGGTGGGCTTTATCATGACTGATAAAGCGCCTG AGCCTGTATCACAGGCGCTGGGGGACGGCGACTGGGTGCCCGTGCTGTTTCAGCTTTCCTATCAAATGGCCGGTGTCACT ACCCTGGTTAAGCGTGAAGACCTTATCAAGGTTGACTGGAGCTTTGAAGAAGCCATGCGTTTTAACCTGACTGCCGGTCT GTCAAAGTCCTGA
Upstream 100 bases:
>100_bases AGGAGTGAGGCACGGATAGCCAGAGTCAACGGCTGTGATACCATAGCGGACAATTTCAGGGGCATCCTGCCCCAAAGCCA CTGCGTTAATCGAGGAAATA
Downstream 100 bases:
>100_bases GCGACTAATCGCATCGTCATTTAACACCTATGCCAGCCCTGCGGCGATTTCAGCAGGGCCACGCCTCTTGCCAGATTGTT TCTATTCTAAAGACGCCACT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 190; Mature: 190
Protein sequence:
>190_residues MKTTLTRGLMNVLPMALSLWLFWSLFVSLDELGVLLLELVGLPKLFVGEGFLLVIALVFSAGLLFSVSPIQWIWGKVERA LMRFPLFKSVYGSIRDIASLMNRDGKPKDQQVVLVKQANGGYVVGFIMTDKAPEPVSQALGDGDWVPVLFQLSYQMAGVT TLVKREDLIKVDWSFEEAMRFNLTAGLSKS
Sequences:
>Translated_190_residues MKTTLTRGLMNVLPMALSLWLFWSLFVSLDELGVLLLELVGLPKLFVGEGFLLVIALVFSAGLLFSVSPIQWIWGKVERA LMRFPLFKSVYGSIRDIASLMNRDGKPKDQQVVLVKQANGGYVVGFIMTDKAPEPVSQALGDGDWVPVLFQLSYQMAGVT TLVKREDLIKVDWSFEEAMRFNLTAGLSKS >Mature_190_residues MKTTLTRGLMNVLPMALSLWLFWSLFVSLDELGVLLLELVGLPKLFVGEGFLLVIALVFSAGLLFSVSPIQWIWGKVERA LMRFPLFKSVYGSIRDIASLMNRDGKPKDQQVVLVKQANGGYVVGFIMTDKAPEPVSQALGDGDWVPVLFQLSYQMAGVT TLVKREDLIKVDWSFEEAMRFNLTAGLSKS
Specific function: Unknown
COG id: COG2928
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21146; Mature: 21146
Theoretical pI: Translated: 8.92; Mature: 8.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTTLTRGLMNVLPMALSLWLFWSLFVSLDELGVLLLELVGLPKLFVGEGFLLVIALVFS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHH AGLLFSVSPIQWIWGKVERALMRFPLFKSVYGSIRDIASLMNRDGKPKDQQVVLVKQANG CCHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCC GYVVGFIMTDKAPEPVSQALGDGDWVPVLFQLSYQMAGVTTLVKREDLIKVDWSFEEAMR CEEEEEEEECCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHH FNLTAGLSKS HHHCCCCCCC >Mature Secondary Structure MKTTLTRGLMNVLPMALSLWLFWSLFVSLDELGVLLLELVGLPKLFVGEGFLLVIALVFS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHH AGLLFSVSPIQWIWGKVERALMRFPLFKSVYGSIRDIASLMNRDGKPKDQQVVLVKQANG CCHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCC GYVVGFIMTDKAPEPVSQALGDGDWVPVLFQLSYQMAGVTTLVKREDLIKVDWSFEEAMR CEEEEEEEECCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHH FNLTAGLSKS HHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA