Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
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Accession | NC_008700 |
Length | 4,306,142 |
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The map label for this gene is 119774553
Identifier: 119774553
GI number: 119774553
Start: 1718572
End: 1720320
Strand: Direct
Name: 119774553
Synonym: Sama_1416
Alternate gene names: NA
Gene position: 1718572-1720320 (Clockwise)
Preceding gene: 119774549
Following gene: 119774560
Centisome position: 39.91
GC content: 57.35
Gene sequence:
>1749_bases ATGATGGTGATGTCCGCAATGGGACTGGCCGCCATGGTGCCTGTGGCTGCAAACGCCGCCGTGACCGGGGCGCAGAAAAC TCTGGTGTTTCTGGTCAACTTTCAGGAAAACCCCAACGATCTGCCCATGAGCGTCAGCGAAGCTGATGCCATGGTGTTCG GCACCGTCAATGATTTCTACCGTGCGGCCTCAGATAACCAACTGTGGTTGACCGGTACCGTGGCTGGTGTGTTCACCGCG CCCATGTCCAACCAGGTTTGCAACAACGCCAATACCCTGGCGCAGTCCATCAATGAACAGGCGATTGCCGCCGGCGTGCC CCTGAACCAGTATGACCGCTATGTGTATCTGACCACCAAGGACGCCTGTCAGTCTGAAGGCTCAGCCACCCTGACCGGTC TGCCATCACGCGCCGTTATCAATGGTCCTCAGCCTGCCCGCGTTGTTGCACACGAATTTGGTCACAACCTGGGCCTGGAA CACGCCGGTGCCTGGGATTGTGATGCCGGTACGCTGGCGGGTAACTGCCGCGTAATTGAGTACGGTGACAGCTACAGCAC CATGGGTAACTCAGATATGGGCTATTTCGGCGCCGAGCAAAAAGAACAGCTGGGTTGGGTTAGCGCAGCGTCTGGTGCAG TAGCTGTGGCAGCGGAGGATGGTGTGTATACTCTGGGCGCCTATGAGCAGAGCAACGGCCAACCCATCGCGGTGAAAATC CCCCGCGGTGCCGACCCCGTCACCGGCAAACAGCGTTGGTTTTATATCGAGTATCGCCAGTCTCTGGCCCATGACAGCTT CCTGGCTGCACGCTCTTACACCCTGTACCGCGGCGATGTGACCGAAGGGGTATTGGTTCGTATGGTCACCGAAGGTGAGC CACGCAGCCGCGTACTGCACATGAAGCCTGATGCCTACTTCAAGCAAAGATATGGCATGAACGACTGGAAAGATCCTGCC ATGGCCATAGGTGACAGCTTTACCGATCCGGATTCAGGTGTGACTTTCAGTCTCTTGTCTGCCAATGGCAACACTGCCGA CATCAGTGTCCAGCTGGGTAGCGCTGCTGGTCAGTGTTTGAAAGCCGCACCAACCGTTACCGCTGTGCAAAGCGTTGCCT CCGGGAATGCCGGTGACACTGTGCAGTACAGTGTGAGAATTGAAAACCGTGACTCTGCAGATTGTGCCGCTACCGATTAC CGTGTTGCAGCCAGCCTGCTGAGTGGTTGGCAGGCCAACACTGCCACTGTCACTCTGGCTCCCGGTGCCAGTCAGCAGGT GACGCTGGCCGTTACTTCTGCCGGCAACAGTGCTGACGGTAACTACAACGTGCCTGTGACTGCCACTTCACTGGCCGACA CCAGCGTTAAAGGCAGCACCAACCTGACTTACCAGGTAATTGCAGCCCCTGCTGCCAGTGAGCTGGTTGCCAACAATGAC CTGGTGAACATCAGCAGCAAGCAAGCCGTTACCATCGCGGTGAAGGCCAATGACGTGATAGCCCAGGGTGCCAGTGTGAC AGTGCAGGTTTCTGCCGCCGCTAAAGGCAGCGTGGAAGTACTGAGTGATGGCAGCGTACGTTACACTCCTGCCAAGGCGT TCAAAACCAGCGACAGCTTCAGCTACACCCTGTTTGATGGTATCAGCAGCTCCAGCGCGACCGTGACTGTGACGCTGAGC TCATCCACCACAGATACAGGTGATACCAGCACTGGCGGCAGCACCGGCGGCAAAGGTAAGAACCGTTGA
Upstream 100 bases:
>100_bases TTGCAAAATGACAAAGTTGACCCAAGTTACTGCAAGCACCGCCCACATCCGTCAGTCACAGCGCCTTTCTTCAAAGGGGT TTGGCAGGACAGTTGCGTCA
Downstream 100 bases:
>100_bases CAGTGACCCGATAAAAAAAAGCCCGGTATTGATACCGGGCTTTTTGTTTGTGCTCTTTCTGGAGTCAGGTCTTGTGGTTC ACAATCAAGCCACTGACTGA
Product: hypothetical protein
Products: NA
Alternate protein names: Lipoprotein; Exported Protein With Lectin-Like C-Terminus
Number of amino acids: Translated: 582; Mature: 582
Protein sequence:
>582_residues MMVMSAMGLAAMVPVAANAAVTGAQKTLVFLVNFQENPNDLPMSVSEADAMVFGTVNDFYRAASDNQLWLTGTVAGVFTA PMSNQVCNNANTLAQSINEQAIAAGVPLNQYDRYVYLTTKDACQSEGSATLTGLPSRAVINGPQPARVVAHEFGHNLGLE HAGAWDCDAGTLAGNCRVIEYGDSYSTMGNSDMGYFGAEQKEQLGWVSAASGAVAVAAEDGVYTLGAYEQSNGQPIAVKI PRGADPVTGKQRWFYIEYRQSLAHDSFLAARSYTLYRGDVTEGVLVRMVTEGEPRSRVLHMKPDAYFKQRYGMNDWKDPA MAIGDSFTDPDSGVTFSLLSANGNTADISVQLGSAAGQCLKAAPTVTAVQSVASGNAGDTVQYSVRIENRDSADCAATDY RVAASLLSGWQANTATVTLAPGASQQVTLAVTSAGNSADGNYNVPVTATSLADTSVKGSTNLTYQVIAAPAASELVANND LVNISSKQAVTIAVKANDVIAQGASVTVQVSAAAKGSVEVLSDGSVRYTPAKAFKTSDSFSYTLFDGISSSSATVTVTLS SSTTDTGDTSTGGSTGGKGKNR
Sequences:
>Translated_582_residues MMVMSAMGLAAMVPVAANAAVTGAQKTLVFLVNFQENPNDLPMSVSEADAMVFGTVNDFYRAASDNQLWLTGTVAGVFTA PMSNQVCNNANTLAQSINEQAIAAGVPLNQYDRYVYLTTKDACQSEGSATLTGLPSRAVINGPQPARVVAHEFGHNLGLE HAGAWDCDAGTLAGNCRVIEYGDSYSTMGNSDMGYFGAEQKEQLGWVSAASGAVAVAAEDGVYTLGAYEQSNGQPIAVKI PRGADPVTGKQRWFYIEYRQSLAHDSFLAARSYTLYRGDVTEGVLVRMVTEGEPRSRVLHMKPDAYFKQRYGMNDWKDPA MAIGDSFTDPDSGVTFSLLSANGNTADISVQLGSAAGQCLKAAPTVTAVQSVASGNAGDTVQYSVRIENRDSADCAATDY RVAASLLSGWQANTATVTLAPGASQQVTLAVTSAGNSADGNYNVPVTATSLADTSVKGSTNLTYQVIAAPAASELVANND LVNISSKQAVTIAVKANDVIAQGASVTVQVSAAAKGSVEVLSDGSVRYTPAKAFKTSDSFSYTLFDGISSSSATVTVTLS SSTTDTGDTSTGGSTGGKGKNR >Mature_582_residues MMVMSAMGLAAMVPVAANAAVTGAQKTLVFLVNFQENPNDLPMSVSEADAMVFGTVNDFYRAASDNQLWLTGTVAGVFTA PMSNQVCNNANTLAQSINEQAIAAGVPLNQYDRYVYLTTKDACQSEGSATLTGLPSRAVINGPQPARVVAHEFGHNLGLE HAGAWDCDAGTLAGNCRVIEYGDSYSTMGNSDMGYFGAEQKEQLGWVSAASGAVAVAAEDGVYTLGAYEQSNGQPIAVKI PRGADPVTGKQRWFYIEYRQSLAHDSFLAARSYTLYRGDVTEGVLVRMVTEGEPRSRVLHMKPDAYFKQRYGMNDWKDPA MAIGDSFTDPDSGVTFSLLSANGNTADISVQLGSAAGQCLKAAPTVTAVQSVASGNAGDTVQYSVRIENRDSADCAATDY RVAASLLSGWQANTATVTLAPGASQQVTLAVTSAGNSADGNYNVPVTATSLADTSVKGSTNLTYQVIAAPAASELVANND LVNISSKQAVTIAVKANDVIAQGASVTVQVSAAAKGSVEVLSDGSVRYTPAKAFKTSDSFSYTLFDGISSSSATVTVTLS SSTTDTGDTSTGGSTGGKGKNR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60496; Mature: 60496
Theoretical pI: Translated: 4.55; Mature: 4.55
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMVMSAMGLAAMVPVAANAAVTGAQKTLVFLVNFQENPNDLPMSVSEADAMVFGTVNDFY CEEEECCCHHHHHHHHCCCEECCCCEEEEEEEEECCCCCCCCCEECCCCEEEEECHHHHH RAASDNQLWLTGTVAGVFTAPMSNQVCNNANTLAQSINEQAIAAGVPLNQYDRYVYLTTK HCCCCCEEEEEEEEEEEEECCCCCHHHCCHHHHHHHHCCCCEEECCCHHHCCCEEEEEEC DACQSEGSATLTGLPSRAVINGPQPARVVAHEFGHNLGLEHAGAWDCDAGTLAGNCRVIE HHHCCCCCEEEECCCCCEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEE YGDSYSTMGNSDMGYFGAEQKEQLGWVSAASGAVAVAAEDGVYTLGAYEQSNGQPIAVKI ECCCCCCCCCCCCCCCCCCCHHHCCEEEECCCEEEEEECCCEEEEEEEECCCCCEEEEEC PRGADPVTGKQRWFYIEYRQSLAHDSFLAARSYTLYRGDVTEGVLVRMVTEGEPRSRVLH CCCCCCCCCCCEEEEEEEHHHCCCCCCHHHCEEEEEECCCCCCEEEEEEECCCCHHCEEE MKPDAYFKQRYGMNDWKDPAMAIGDSFTDPDSGVTFSLLSANGNTADISVQLGSAAGQCL ECCCHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCHHH KAAPTVTAVQSVASGNAGDTVQYSVRIENRDSADCAATDYRVAASLLSGWQANTATVTLA HCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEC PGASQQVTLAVTSAGNSADGNYNVPVTATSLADTSVKGSTNLTYQVIAAPAASELVANND CCCCCEEEEEEEECCCCCCCCEECCEEEECCCCCCCCCCCCEEEEEEECCCHHHHHCCCC LVNISSKQAVTIAVKANDVIAQGASVTVQVSAAAKGSVEVLSDGSVRYTPAKAFKTSDSF EEEECCCCEEEEEEECCCEEECCCEEEEEEEECCCCCEEEEECCCEEECCHHHEECCCCE SYTLFDGISSSSATVTVTLSSSTTDTGDTSTGGSTGGKGKNR EEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MMVMSAMGLAAMVPVAANAAVTGAQKTLVFLVNFQENPNDLPMSVSEADAMVFGTVNDFY CEEEECCCHHHHHHHHCCCEECCCCEEEEEEEEECCCCCCCCCEECCCCEEEEECHHHHH RAASDNQLWLTGTVAGVFTAPMSNQVCNNANTLAQSINEQAIAAGVPLNQYDRYVYLTTK HCCCCCEEEEEEEEEEEEECCCCCHHHCCHHHHHHHHCCCCEEECCCHHHCCCEEEEEEC DACQSEGSATLTGLPSRAVINGPQPARVVAHEFGHNLGLEHAGAWDCDAGTLAGNCRVIE HHHCCCCCEEEECCCCCEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEE YGDSYSTMGNSDMGYFGAEQKEQLGWVSAASGAVAVAAEDGVYTLGAYEQSNGQPIAVKI ECCCCCCCCCCCCCCCCCCCHHHCCEEEECCCEEEEEECCCEEEEEEEECCCCCEEEEEC PRGADPVTGKQRWFYIEYRQSLAHDSFLAARSYTLYRGDVTEGVLVRMVTEGEPRSRVLH CCCCCCCCCCCEEEEEEEHHHCCCCCCHHHCEEEEEECCCCCCEEEEEEECCCCHHCEEE MKPDAYFKQRYGMNDWKDPAMAIGDSFTDPDSGVTFSLLSANGNTADISVQLGSAAGQCL ECCCHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCHHH KAAPTVTAVQSVASGNAGDTVQYSVRIENRDSADCAATDYRVAASLLSGWQANTATVTLA HCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEC PGASQQVTLAVTSAGNSADGNYNVPVTATSLADTSVKGSTNLTYQVIAAPAASELVANND CCCCCEEEEEEEECCCCCCCCEECCEEEECCCCCCCCCCCCEEEEEEECCCHHHHHCCCC LVNISSKQAVTIAVKANDVIAQGASVTVQVSAAAKGSVEVLSDGSVRYTPAKAFKTSDSF EEEECCCCEEEEEEECCCEEECCCEEEEEEEECCCCCEEEEECCCEEECCHHHEECCCCE SYTLFDGISSSSATVTVTLSSSTTDTGDTSTGGSTGGKGKNR EEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA