Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119774553

Identifier: 119774553

GI number: 119774553

Start: 1718572

End: 1720320

Strand: Direct

Name: 119774553

Synonym: Sama_1416

Alternate gene names: NA

Gene position: 1718572-1720320 (Clockwise)

Preceding gene: 119774549

Following gene: 119774560

Centisome position: 39.91

GC content: 57.35

Gene sequence:

>1749_bases
ATGATGGTGATGTCCGCAATGGGACTGGCCGCCATGGTGCCTGTGGCTGCAAACGCCGCCGTGACCGGGGCGCAGAAAAC
TCTGGTGTTTCTGGTCAACTTTCAGGAAAACCCCAACGATCTGCCCATGAGCGTCAGCGAAGCTGATGCCATGGTGTTCG
GCACCGTCAATGATTTCTACCGTGCGGCCTCAGATAACCAACTGTGGTTGACCGGTACCGTGGCTGGTGTGTTCACCGCG
CCCATGTCCAACCAGGTTTGCAACAACGCCAATACCCTGGCGCAGTCCATCAATGAACAGGCGATTGCCGCCGGCGTGCC
CCTGAACCAGTATGACCGCTATGTGTATCTGACCACCAAGGACGCCTGTCAGTCTGAAGGCTCAGCCACCCTGACCGGTC
TGCCATCACGCGCCGTTATCAATGGTCCTCAGCCTGCCCGCGTTGTTGCACACGAATTTGGTCACAACCTGGGCCTGGAA
CACGCCGGTGCCTGGGATTGTGATGCCGGTACGCTGGCGGGTAACTGCCGCGTAATTGAGTACGGTGACAGCTACAGCAC
CATGGGTAACTCAGATATGGGCTATTTCGGCGCCGAGCAAAAAGAACAGCTGGGTTGGGTTAGCGCAGCGTCTGGTGCAG
TAGCTGTGGCAGCGGAGGATGGTGTGTATACTCTGGGCGCCTATGAGCAGAGCAACGGCCAACCCATCGCGGTGAAAATC
CCCCGCGGTGCCGACCCCGTCACCGGCAAACAGCGTTGGTTTTATATCGAGTATCGCCAGTCTCTGGCCCATGACAGCTT
CCTGGCTGCACGCTCTTACACCCTGTACCGCGGCGATGTGACCGAAGGGGTATTGGTTCGTATGGTCACCGAAGGTGAGC
CACGCAGCCGCGTACTGCACATGAAGCCTGATGCCTACTTCAAGCAAAGATATGGCATGAACGACTGGAAAGATCCTGCC
ATGGCCATAGGTGACAGCTTTACCGATCCGGATTCAGGTGTGACTTTCAGTCTCTTGTCTGCCAATGGCAACACTGCCGA
CATCAGTGTCCAGCTGGGTAGCGCTGCTGGTCAGTGTTTGAAAGCCGCACCAACCGTTACCGCTGTGCAAAGCGTTGCCT
CCGGGAATGCCGGTGACACTGTGCAGTACAGTGTGAGAATTGAAAACCGTGACTCTGCAGATTGTGCCGCTACCGATTAC
CGTGTTGCAGCCAGCCTGCTGAGTGGTTGGCAGGCCAACACTGCCACTGTCACTCTGGCTCCCGGTGCCAGTCAGCAGGT
GACGCTGGCCGTTACTTCTGCCGGCAACAGTGCTGACGGTAACTACAACGTGCCTGTGACTGCCACTTCACTGGCCGACA
CCAGCGTTAAAGGCAGCACCAACCTGACTTACCAGGTAATTGCAGCCCCTGCTGCCAGTGAGCTGGTTGCCAACAATGAC
CTGGTGAACATCAGCAGCAAGCAAGCCGTTACCATCGCGGTGAAGGCCAATGACGTGATAGCCCAGGGTGCCAGTGTGAC
AGTGCAGGTTTCTGCCGCCGCTAAAGGCAGCGTGGAAGTACTGAGTGATGGCAGCGTACGTTACACTCCTGCCAAGGCGT
TCAAAACCAGCGACAGCTTCAGCTACACCCTGTTTGATGGTATCAGCAGCTCCAGCGCGACCGTGACTGTGACGCTGAGC
TCATCCACCACAGATACAGGTGATACCAGCACTGGCGGCAGCACCGGCGGCAAAGGTAAGAACCGTTGA

Upstream 100 bases:

>100_bases
TTGCAAAATGACAAAGTTGACCCAAGTTACTGCAAGCACCGCCCACATCCGTCAGTCACAGCGCCTTTCTTCAAAGGGGT
TTGGCAGGACAGTTGCGTCA

Downstream 100 bases:

>100_bases
CAGTGACCCGATAAAAAAAAGCCCGGTATTGATACCGGGCTTTTTGTTTGTGCTCTTTCTGGAGTCAGGTCTTGTGGTTC
ACAATCAAGCCACTGACTGA

Product: hypothetical protein

Products: NA

Alternate protein names: Lipoprotein; Exported Protein With Lectin-Like C-Terminus

Number of amino acids: Translated: 582; Mature: 582

Protein sequence:

>582_residues
MMVMSAMGLAAMVPVAANAAVTGAQKTLVFLVNFQENPNDLPMSVSEADAMVFGTVNDFYRAASDNQLWLTGTVAGVFTA
PMSNQVCNNANTLAQSINEQAIAAGVPLNQYDRYVYLTTKDACQSEGSATLTGLPSRAVINGPQPARVVAHEFGHNLGLE
HAGAWDCDAGTLAGNCRVIEYGDSYSTMGNSDMGYFGAEQKEQLGWVSAASGAVAVAAEDGVYTLGAYEQSNGQPIAVKI
PRGADPVTGKQRWFYIEYRQSLAHDSFLAARSYTLYRGDVTEGVLVRMVTEGEPRSRVLHMKPDAYFKQRYGMNDWKDPA
MAIGDSFTDPDSGVTFSLLSANGNTADISVQLGSAAGQCLKAAPTVTAVQSVASGNAGDTVQYSVRIENRDSADCAATDY
RVAASLLSGWQANTATVTLAPGASQQVTLAVTSAGNSADGNYNVPVTATSLADTSVKGSTNLTYQVIAAPAASELVANND
LVNISSKQAVTIAVKANDVIAQGASVTVQVSAAAKGSVEVLSDGSVRYTPAKAFKTSDSFSYTLFDGISSSSATVTVTLS
SSTTDTGDTSTGGSTGGKGKNR

Sequences:

>Translated_582_residues
MMVMSAMGLAAMVPVAANAAVTGAQKTLVFLVNFQENPNDLPMSVSEADAMVFGTVNDFYRAASDNQLWLTGTVAGVFTA
PMSNQVCNNANTLAQSINEQAIAAGVPLNQYDRYVYLTTKDACQSEGSATLTGLPSRAVINGPQPARVVAHEFGHNLGLE
HAGAWDCDAGTLAGNCRVIEYGDSYSTMGNSDMGYFGAEQKEQLGWVSAASGAVAVAAEDGVYTLGAYEQSNGQPIAVKI
PRGADPVTGKQRWFYIEYRQSLAHDSFLAARSYTLYRGDVTEGVLVRMVTEGEPRSRVLHMKPDAYFKQRYGMNDWKDPA
MAIGDSFTDPDSGVTFSLLSANGNTADISVQLGSAAGQCLKAAPTVTAVQSVASGNAGDTVQYSVRIENRDSADCAATDY
RVAASLLSGWQANTATVTLAPGASQQVTLAVTSAGNSADGNYNVPVTATSLADTSVKGSTNLTYQVIAAPAASELVANND
LVNISSKQAVTIAVKANDVIAQGASVTVQVSAAAKGSVEVLSDGSVRYTPAKAFKTSDSFSYTLFDGISSSSATVTVTLS
SSTTDTGDTSTGGSTGGKGKNR
>Mature_582_residues
MMVMSAMGLAAMVPVAANAAVTGAQKTLVFLVNFQENPNDLPMSVSEADAMVFGTVNDFYRAASDNQLWLTGTVAGVFTA
PMSNQVCNNANTLAQSINEQAIAAGVPLNQYDRYVYLTTKDACQSEGSATLTGLPSRAVINGPQPARVVAHEFGHNLGLE
HAGAWDCDAGTLAGNCRVIEYGDSYSTMGNSDMGYFGAEQKEQLGWVSAASGAVAVAAEDGVYTLGAYEQSNGQPIAVKI
PRGADPVTGKQRWFYIEYRQSLAHDSFLAARSYTLYRGDVTEGVLVRMVTEGEPRSRVLHMKPDAYFKQRYGMNDWKDPA
MAIGDSFTDPDSGVTFSLLSANGNTADISVQLGSAAGQCLKAAPTVTAVQSVASGNAGDTVQYSVRIENRDSADCAATDY
RVAASLLSGWQANTATVTLAPGASQQVTLAVTSAGNSADGNYNVPVTATSLADTSVKGSTNLTYQVIAAPAASELVANND
LVNISSKQAVTIAVKANDVIAQGASVTVQVSAAAKGSVEVLSDGSVRYTPAKAFKTSDSFSYTLFDGISSSSATVTVTLS
SSTTDTGDTSTGGSTGGKGKNR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 60496; Mature: 60496

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMVMSAMGLAAMVPVAANAAVTGAQKTLVFLVNFQENPNDLPMSVSEADAMVFGTVNDFY
CEEEECCCHHHHHHHHCCCEECCCCEEEEEEEEECCCCCCCCCEECCCCEEEEECHHHHH
RAASDNQLWLTGTVAGVFTAPMSNQVCNNANTLAQSINEQAIAAGVPLNQYDRYVYLTTK
HCCCCCEEEEEEEEEEEEECCCCCHHHCCHHHHHHHHCCCCEEECCCHHHCCCEEEEEEC
DACQSEGSATLTGLPSRAVINGPQPARVVAHEFGHNLGLEHAGAWDCDAGTLAGNCRVIE
HHHCCCCCEEEECCCCCEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEE
YGDSYSTMGNSDMGYFGAEQKEQLGWVSAASGAVAVAAEDGVYTLGAYEQSNGQPIAVKI
ECCCCCCCCCCCCCCCCCCCHHHCCEEEECCCEEEEEECCCEEEEEEEECCCCCEEEEEC
PRGADPVTGKQRWFYIEYRQSLAHDSFLAARSYTLYRGDVTEGVLVRMVTEGEPRSRVLH
CCCCCCCCCCCEEEEEEEHHHCCCCCCHHHCEEEEEECCCCCCEEEEEEECCCCHHCEEE
MKPDAYFKQRYGMNDWKDPAMAIGDSFTDPDSGVTFSLLSANGNTADISVQLGSAAGQCL
ECCCHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCHHH
KAAPTVTAVQSVASGNAGDTVQYSVRIENRDSADCAATDYRVAASLLSGWQANTATVTLA
HCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEC
PGASQQVTLAVTSAGNSADGNYNVPVTATSLADTSVKGSTNLTYQVIAAPAASELVANND
CCCCCEEEEEEEECCCCCCCCEECCEEEECCCCCCCCCCCCEEEEEEECCCHHHHHCCCC
LVNISSKQAVTIAVKANDVIAQGASVTVQVSAAAKGSVEVLSDGSVRYTPAKAFKTSDSF
EEEECCCCEEEEEEECCCEEECCCEEEEEEEECCCCCEEEEECCCEEECCHHHEECCCCE
SYTLFDGISSSSATVTVTLSSSTTDTGDTSTGGSTGGKGKNR
EEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MMVMSAMGLAAMVPVAANAAVTGAQKTLVFLVNFQENPNDLPMSVSEADAMVFGTVNDFY
CEEEECCCHHHHHHHHCCCEECCCCEEEEEEEEECCCCCCCCCEECCCCEEEEECHHHHH
RAASDNQLWLTGTVAGVFTAPMSNQVCNNANTLAQSINEQAIAAGVPLNQYDRYVYLTTK
HCCCCCEEEEEEEEEEEEECCCCCHHHCCHHHHHHHHCCCCEEECCCHHHCCCEEEEEEC
DACQSEGSATLTGLPSRAVINGPQPARVVAHEFGHNLGLEHAGAWDCDAGTLAGNCRVIE
HHHCCCCCEEEECCCCCEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEE
YGDSYSTMGNSDMGYFGAEQKEQLGWVSAASGAVAVAAEDGVYTLGAYEQSNGQPIAVKI
ECCCCCCCCCCCCCCCCCCCHHHCCEEEECCCEEEEEECCCEEEEEEEECCCCCEEEEEC
PRGADPVTGKQRWFYIEYRQSLAHDSFLAARSYTLYRGDVTEGVLVRMVTEGEPRSRVLH
CCCCCCCCCCCEEEEEEEHHHCCCCCCHHHCEEEEEECCCCCCEEEEEEECCCCHHCEEE
MKPDAYFKQRYGMNDWKDPAMAIGDSFTDPDSGVTFSLLSANGNTADISVQLGSAAGQCL
ECCCHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCHHH
KAAPTVTAVQSVASGNAGDTVQYSVRIENRDSADCAATDYRVAASLLSGWQANTATVTLA
HCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEC
PGASQQVTLAVTSAGNSADGNYNVPVTATSLADTSVKGSTNLTYQVIAAPAASELVANND
CCCCCEEEEEEEECCCCCCCCEECCEEEECCCCCCCCCCCCEEEEEEECCCHHHHHCCCC
LVNISSKQAVTIAVKANDVIAQGASVTVQVSAAAKGSVEVLSDGSVRYTPAKAFKTSDSF
EEEECCCCEEEEEEECCCEEECCCEEEEEEEECCCCCEEEEECCCEEECCHHHEECCCCE
SYTLFDGISSSSATVTVTLSSSTTDTGDTSTGGSTGGKGKNR
EEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA